genome.fa.s20.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  151  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49905585--49905629	18	2.3	20	85	7	58	53	4	4	37	1.41
49907423--49907629	53	3.8	54	75	1	182	20	24	17	37	1.94
49907967--49908024	30	1.9	30	85	0	80	25	29	3	41	1.72
49915884--49916087	53	3.8	55	76	1	180	21	24	18	36	1.95
49921058--49921127	35	2.0	35	97	0	131	25	27	20	27	1.99
49927337--49927482	72	2.0	72	97	0	274	29	17	12	40	1.86
49928553--49928602	3	16.7	3	91	0	82	64	2	32	2	1.16
49929598--49929656	30	2.0	30	93	0	100	59	13	1	25	1.44
49930081--49930159	39	2.0	39	100	0	158	41	10	12	35	1.77
49931136--49931182	22	2.1	22	100	0	94	31	27	0	40	1.57
49931830--49931875	24	1.9	24	83	16	60	10	39	0	50	1.38
49934635--49934899	48	5.5	48	80	5	225	27	28	17	26	1.98
49934678--49934898	95	2.3	96	86	2	311	28	29	16	25	1.97
49940253--49940368	61	2.0	60	86	5	164	50	6	3	39	1.44
49948244--49948276	16	2.0	17	94	5	59	51	12	24	12	1.73
49951648--49951849	42	4.6	42	73	10	163	29	17	22	30	1.97
49958523--49958647	23	5.5	23	80	7	130	37	14	14	33	1.86
49958875--49958904	15	2.0	15	93	0	51	36	6	6	50	1.55
49959488--49959538	25	2.0	25	88	0	75	45	11	13	29	1.79
49959500--49959551	25	2.3	23	83	12	63	53	11	7	26	1.63
49964069--49964187	26	4.8	24	79	10	93	26	23	18	31	1.97
49964080--49964160	24	3.3	24	83	8	94	23	23	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49964080--49964177	24	4.1	23	78	11	74	25	23	18	32	1.97
49976127--49976158	12	2.7	12	95	0	55	21	40	31	6	1.78
49976818--49976886	30	2.3	30	89	0	111	24	36	21	17	1.95
49984008--49984178	43	4.0	44	76	8	163	35	26	14	24	1.93
49992768--49992864	20	4.8	20	72	5	79	13	36	17	32	1.89
49992766--49992870	40	2.6	40	80	7	115	13	36	18	32	1.89
49992775--49992890	60	1.9	61	81	8	139	14	35	18	31	1.91
50008313--50008428	58	2.0	58	96	0	214	17	26	14	41	1.88
50009401--50009435	9	3.9	9	92	0	52	20	34	34	11	1.88
50010271--50010322	27	1.9	27	88	7	79	23	21	25	30	1.99
50011695--50011749	25	2.2	25	100	0	110	36	16	16	30	1.91
50018786--50018844	30	2.0	30	96	0	109	57	10	3	28	1.48
50018885--50018932	22	2.2	22	81	7	53	60	6	14	18	1.55
50020341--50020386	23	2.0	23	100	0	92	39	4	4	52	1.41
50024018--50024054	18	2.1	18	100	0	74	51	10	10	27	1.70
50024631--50024688	29	2.0	29	100	0	116	44	0	17	37	1.49
50036390--50036461	36	2.0	37	88	2	110	15	31	29	23	1.95
50045324--50045500	40	4.4	40	90	3	252	24	29	23	23	1.99
50049295--50049428	59	2.2	60	82	7	164	35	5	14	44	1.69
50067913--50067937	13	1.9	13	100	0	50	40	0	12	48	1.40
50077305--50077350	20	2.3	20	88	0	65	45	21	4	28	1.71
50077476--50077529	26	2.2	25	83	12	67	22	24	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50086291--50086505	40	5.4	40	89	2	301	21	26	23	27	1.99
50086954--50087030	39	2.0	39	97	0	145	53	0	19	27	1.46
50086957--50087021	19	3.4	19	67	26	55	52	0	21	26	1.47
50109248--50109472	40	5.6	40	80	11	230	24	26	22	26	2.00
50109248--50109473	80	2.8	79	82	9	278	24	26	22	26	2.00
50109248--50109473	120	1.9	120	83	7	298	24	26	22	26	2.00
50112391--50112485	48	2.0	48	97	0	181	24	31	16	27	1.97
50117114--50117337	79	2.8	78	83	9	274	25	27	22	25	2.00
50117114--50117337	40	5.7	40	86	8	275	25	27	22	25	2.00
50123351--50123416	34	1.9	34	81	0	78	27	22	21	28	1.99
50126403--50126574	93	1.8	93	92	0	290	29	29	20	20	1.97
50126396--50126571	46	3.8	46	75	12	189	30	29	19	19	1.97
50128591--50128745	44	3.6	44	76	10	142	27	16	25	30	1.96
50134650--50134787	41	3.4	40	78	6	127	30	21	18	28	1.97
50134718--50134804	40	2.2	40	85	0	111	32	21	17	28	1.96
50158260--50158374	43	2.7	43	84	5	137	28	26	15	29	1.96
50175146--50175185	21	2.0	20	90	5	62	42	22	0	35	1.54
50175816--50175877	32	2.0	31	87	3	88	16	19	6	58	1.59
50185398--50185795	197	2.0	199	97	1	755	36	17	18	27	1.93
50186766--50186937	79	2.2	79	84	3	220	25	21	27	25	1.99
50186713--50186935	40	5.6	39	81	8	209	25	21	27	25	1.99
50186793--50186970	79	2.2	80	80	3	191	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50190579--50190678	51	2.0	51	85	0	137	29	13	26	32	1.93
50194748--50194997	40	6.3	40	90	3	292	24	21	28	26	1.99
50194695--50194997	80	3.8	79	84	3	342	25	21	27	26	1.99
50194695--50194997	120	2.5	119	83	3	358	25	21	27	26	1.99
50195381--50195560	31	5.8	31	90	2	272	27	19	26	26	1.99
50195559--50195587	7	4.1	7	100	0	58	44	13	27	13	1.82
50199217--50199354	40	3.5	40	84	0	141	35	21	13	30	1.91
50201779--50201822	22	2.0	22	90	0	70	20	9	22	47	1.78
50209465--50209510	21	2.2	21	84	7	58	36	0	17	45	1.49
50209720--50209771	19	2.9	18	83	10	72	46	15	15	23	1.83
50215524--50215690	45	3.7	45	83	4	176	46	34	2	16	1.62
50215524--50215690	23	7.4	23	76	3	160	46	34	2	16	1.62
50215524--50215697	46	3.9	45	83	5	183	47	33	2	15	1.60
50215649--50215714	34	2.0	33	85	5	89	48	34	1	15	1.54
50216894--50216943	16	3.1	16	79	0	64	28	16	26	30	1.96
50223203--50223234	16	2.0	16	100	0	64	43	18	0	37	1.51
50234086--50234205	47	2.6	46	83	7	143	34	19	24	22	1.97
50234178--50234292	46	2.5	44	83	6	133	28	18	29	23	1.98
50241969--50241999	15	2.1	15	100	0	62	25	19	19	35	1.95
50242870--50242988	45	2.6	46	85	5	143	30	14	30	25	1.95
50242917--50243038	45	2.7	44	82	8	131	27	18	30	23	1.97
50252180--50252354	40	4.4	39	80	6	190	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50252182--50252364	80	2.3	81	82	4	210	25	24	27	23	2.00
50291417--50291447	11	2.7	11	95	5	53	83	0	6	9	0.79
50297180--50297261	27	3.1	26	72	11	76	75	6	4	13	1.15
50298595--50298629	18	2.0	17	88	5	52	62	2	11	22	1.41
50303396--50303430	2	17.5	2	100	0	70	0	0	48	51	1.00
50306491--50306798	153	2.0	153	99	0	607	22	12	18	47	1.82
50308668--50308706	17	2.3	17	100	0	78	33	0	43	23	1.54
50312076--50312253	27	6.6	27	84	3	205	29	28	15	26	1.96
50312097--50312252	82	1.9	81	88	3	233	29	28	15	26	1.96
50314992--50315212	111	2.0	111	98	0	424	25	30	18	25	1.98
50316483--50316717	118	2.0	118	97	0	443	28	26	22	22	1.99
50320369--50320546	27	6.6	27	84	3	205	29	28	15	26	1.96
50320390--50320545	82	1.9	81	88	3	233	29	28	15	26	1.96
50324835--50324983	40	3.7	40	84	8	196	26	27	21	24	1.99
50329555--50329631	34	2.3	34	81	0	91	40	6	16	36	1.75
50330563--50330753	39	4.9	39	90	2	294	22	22	29	25	1.99
50333000--50333163	28	5.8	28	71	2	130	17	19	34	28	1.95
50333026--50333184	29	5.5	28	72	5	129	17	16	35	30	1.92
50332998--50333168	57	3.0	57	92	0	288	17	18	34	29	1.94
50341962--50342137	56	3.1	56	99	0	343	45	9	22	22	1.80
50343942--50344016	22	3.3	22	65	17	62	32	10	30	26	1.90
50343638--50344017	47	8.0	47	93	4	649	32	10	31	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50351776--50351953	27	6.6	27	84	3	205	29	28	15	26	1.96
50351797--50351952	82	1.9	81	88	3	233	29	28	15	26	1.96
50357997--50358085	33	2.7	34	75	11	96	28	24	24	22	2.00
50361279--50361331	21	2.5	21	81	6	63	24	30	32	13	1.93
50386017--50386074	26	2.2	26	93	0	98	34	5	24	36	1.78
50392689--50393006	40	7.9	40	85	4	435	29	20	24	25	1.99
50392689--50393006	80	4.0	80	96	0	557	29	20	24	25	1.99
50393372--50393435	29	2.2	28	83	2	83	23	0	28	48	1.51
50393309--50393510	7	28.4	7	69	10	79	22	1	29	46	1.63
50393413--50393540	7	18.0	7	69	18	50	21	1	35	41	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186