genome.fa.s20.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  57  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17725711--17725761	23	2.2	23	82	6	59	41	3	17	37	1.68
17726135--17726174	9	4.4	9	93	0	53	65	5	2	27	1.27
17726111--17726165	3	17.7	3	78	14	58	63	1	0	34	1.05
17726348--17726385	17	2.2	17	95	0	67	52	2	10	34	1.50
17726370--17726455	3	27.7	3	69	13	50	56	3	6	32	1.43
17726417--17726453	19	1.9	19	94	0	65	62	5	5	27	1.39
17726480--17726512	16	2.1	16	88	5	50	66	0	0	33	0.92
17735507--17735610	52	2.0	52	100	0	208	30	13	19	36	1.90
17736762--17737055	38	7.0	38	71	19	201	28	15	25	29	1.96
17736799--17737010	47	4.7	47	78	10	244	28	15	25	30	1.96
17736842--17737048	85	2.4	85	92	0	351	28	14	26	30	1.95
17742386--17742679	38	7.0	38	73	19	219	29	15	24	30	1.96
17742423--17742634	47	4.7	47	82	10	280	28	16	24	30	1.96
17742466--17742672	85	2.4	85	95	0	369	28	15	25	30	1.96
17744821--17744967	43	3.4	42	80	7	152	29	17	23	29	1.97
17746314--17746379	34	1.9	34	96	0	123	28	24	22	24	1.99
17748160--17748306	43	3.4	42	80	7	152	29	17	23	29	1.97
17750553--17750591	17	2.3	17	100	0	78	33	15	10	41	1.81
17753428--17753460	16	2.1	16	100	0	66	21	6	24	48	1.72
17757966--17758016	16	3.2	16	76	15	52	62	0	1	35	1.06
17758492--17758599	15	7.2	15	67	12	78	44	7	22	25	1.79
17758486--17758609	30	4.1	30	93	1	203	43	6	24	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17764445--17764474	16	1.9	16	93	6	53	33	0	0	66	0.92
17771759--17771797	6	6.5	6	87	0	60	79	5	0	15	0.90
17778997--17779066	34	2.1	34	83	5	88	65	4	7	22	1.35
17781987--17782038	15	3.6	15	80	12	56	44	0	1	53	1.11
17782116--17782157	15	2.7	16	82	14	52	45	0	2	52	1.13
17782107--17782148	15	2.9	15	82	10	52	47	0	0	52	1.00
17782283--17782392	45	2.6	43	79	11	120	32	29	5	32	1.80
17782373--17782440	16	4.2	16	94	0	118	35	36	0	27	1.58
17783169--17783224	18	3.5	15	81	18	60	37	10	16	35	1.83
17783175--17783238	17	3.6	17	87	8	92	39	12	12	35	1.81
17783167--17783245	35	2.2	37	86	13	121	39	10	15	35	1.81
17787848--17787903	18	3.5	15	81	18	60	37	10	16	35	1.83
17787854--17787917	17	3.6	17	87	8	92	37	12	14	35	1.83
17787846--17787924	35	2.2	37	86	13	121	37	10	16	35	1.82
17787846--17787917	19	3.9	19	89	10	123	37	11	15	36	1.83
17787846--17787940	17	4.8	22	84	12	79	36	9	15	37	1.80
17795403--17795455	25	2.2	25	93	3	90	67	7	1	22	1.25
17798916--17798957	18	2.5	18	81	11	54	33	0	4	61	1.17
17799919--17799949	16	1.9	16	93	0	53	38	6	6	48	1.55
17800487--17800521	18	1.9	18	100	0	70	51	0	5	42	1.25
17801736--17801813	25	3.2	25	81	1	95	21	17	20	39	1.92
17811793--17811837	7	6.4	7	100	0	90	26	28	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17812857--17812945	43	2.1	43	100	0	178	41	20	4	33	1.72
17813589--17813632	23	1.9	23	90	0	70	50	13	0	36	1.42
17824645--17824695	22	2.3	22	93	0	84	25	39	15	19	1.91
17831719--17831777	31	1.9	31	89	0	91	18	28	37	15	1.91
17832070--17832121	25	2.0	25	85	7	68	25	15	21	38	1.92
17833671--17833734	5	12.8	5	76	0	56	3	17	18	60	1.48
17833671--17833719	20	2.5	20	89	0	71	4	18	16	61	1.50
17835465--17835524	30	2.0	30	90	0	93	18	20	25	36	1.94
17842731--17842794	32	2.0	32	93	0	110	29	20	14	35	1.92
17844494--17844570	38	2.0	38	97	0	145	37	29	3	28	1.75
17850183--17850209	12	2.2	12	100	0	54	40	25	7	25	1.82
17851924--17851994	26	2.7	26	80	8	81	22	29	16	30	1.96
17853943--17854003	21	2.8	22	82	9	81	34	26	24	14	1.94
17853932--17854017	21	4.0	22	77	7	77	38	24	20	16	1.93
17854386--17854443	15	3.8	15	88	2	89	51	12	0	36	1.39
17855714--17855775	5	12.4	5	100	0	124	59	0	0	40	0.97
17855798--17855826	8	3.6	8	100	0	58	62	0	0	37	0.96
17857392--17857665	46	6.0	46	90	1	352	20	22	14	41	1.90
17858371--17858405	3	11.7	3	93	0	61	0	62	0	37	0.95
17859674--17859720	22	2.1	22	88	7	69	4	19	0	76	0.95
17864143--17864337	37	5.0	37	83	10	255	35	14	22	27	1.93
17864107--17864337	74	2.9	78	83	11	281	35	13	22	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17864254--17864377	46	2.8	46	91	3	200	33	16	22	28	1.95
17867557--17867618	23	2.7	23	89	0	97	32	20	22	24	1.98
17867582--17867656	23	3.3	23	78	0	60	32	18	25	24	1.97
17869952--17870161	40	5.3	39	89	4	242	25	21	27	25	1.99
17869899--17870161	120	2.2	120	82	4	309	25	21	27	25	1.99
17869900--17870196	80	3.7	80	81	6	230	26	21	27	24	1.99
17872660--17873141	241	2.0	241	94	0	847	28	19	29	22	1.98
17878086--17878388	40	7.6	40	90	2	405	24	20	27	27	1.99
17880375--17880408	13	2.6	13	90	0	50	11	29	23	35	1.90
17880752--17880800	22	2.1	24	85	7	66	48	24	2	24	1.61
17882636--17882660	7	3.6	7	100	0	50	28	12	0	60	1.32
17882629--17882689	14	4.2	14	78	15	61	26	16	1	55	1.50
17883094--17883139	16	2.8	16	81	15	58	43	10	0	45	1.39
17883107--17883160	25	2.1	26	82	3	65	44	16	0	38	1.48
17883997--17884035	18	2.2	18	95	0	69	33	25	5	35	1.78
17884827--17884869	21	2.2	20	83	8	52	32	4	4	58	1.39
17886656--17886681	3	8.7	3	100	0	52	0	34	0	65	0.93
17887456--17887484	15	1.9	15	100	0	58	27	13	20	37	1.91
17892610--17892646	15	2.5	15	95	4	67	13	10	18	56	1.66
17893199--17893295	48	2.0	48	97	0	185	26	6	25	41	1.79
17896354--17896666	156	2.0	156	90	1	493	32	18	19	29	1.96
17902380--17902411	16	2.0	16	100	0	64	18	31	12	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17913365--17913551	95	2.0	95	93	0	320	29	16	10	43	1.80
17913799--17913855	21	2.7	21	89	10	66	35	21	28	15	1.94
17914023--17914053	6	5.2	6	100	0	62	83	0	0	16	0.64
17918656--17918728	24	2.8	27	76	18	73	35	4	0	60	1.16
17922076--17922236	50	3.2	50	96	0	286	37	14	21	26	1.91
17924793--17924848	27	2.1	27	100	0	112	42	17	3	35	1.67
17935129--17935207	40	2.0	40	84	0	104	35	31	16	16	1.91
17942669--17942729	21	2.9	21	70	0	59	18	22	16	42	1.89
17946017--17946056	18	2.2	18	90	0	62	42	12	5	40	1.64
17956268--17956308	21	2.0	21	95	0	73	17	9	26	46	1.79
17956276--17956322	21	2.2	21	84	0	58	21	10	27	40	1.86
17957419--17957510	46	2.0	46	100	0	184	28	13	30	28	1.94
17958220--17958503	143	2.0	143	97	0	541	42	10	10	36	1.74
17960403--17960465	32	2.0	32	100	0	126	33	12	9	44	1.75
17960560--17960660	50	2.0	50	86	0	139	23	6	30	38	1.81
17962158--17962259	42	2.4	43	85	6	136	27	20	18	33	1.96
17966488--17966722	35	6.5	35	73	7	139	23	22	22	31	1.98
17966489--17966722	74	3.2	72	74	8	224	23	22	23	31	1.98
17966481--17966791	143	2.2	143	85	1	419	23	21	21	33	1.98
17973714--17973787	36	2.1	36	100	0	148	36	22	13	27	1.92
17974370--17974584	102	2.1	101	87	2	315	31	25	13	30	1.93
17978806--17978831	9	2.9	9	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17985493--17985523	12	2.6	12	100	0	62	51	9	12	25	1.70
17985677--17985731	21	2.7	21	83	8	60	36	0	18	45	1.49
17986200--17986259	25	2.4	25	83	2	68	21	26	20	31	1.98
17986272--17986323	24	2.2	23	86	3	68	21	28	13	36	1.91
17989327--17989550	104	2.2	104	93	1	378	31	31	19	17	1.95
17989879--17989942	30	2.2	29	81	10	76	29	28	6	35	1.82
17989886--17989942	30	1.9	30	85	3	80	29	24	7	38	1.82
17996774--17997001	104	2.2	103	92	0	366	29	29	19	21	1.97
18022690--18022721	14	2.3	14	100	0	64	31	6	34	28	1.82
18023941--18023967	3	9.0	3	100	0	54	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186