genome.fa.s20.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  96  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31547113--31547172	30	2.0	30	96	0	111	30	15	26	28	1.96
31548620--31548644	13	1.9	13	100	0	50	28	40	24	8	1.83
31552290--31552534	61	4.0	61	99	0	481	24	18	19	37	1.94
31553135--31553179	23	2.0	23	86	0	63	31	22	31	15	1.95
31553175--31553231	26	2.2	25	78	9	60	40	17	22	19	1.91
31553079--31553243	25	6.6	27	67	16	72	33	20	27	19	1.96
31553307--31553354	25	2.0	25	95	4	89	43	18	20	16	1.88
31558200--31558439	85	2.8	85	88	1	347	27	19	21	31	1.97
31559587--31559633	23	2.0	23	95	0	85	29	12	27	29	1.93
31560907--31561003	40	2.5	38	73	12	97	34	35	11	19	1.88
31561333--31561402	31	2.3	31	97	0	131	5	37	32	24	1.79
31563806--31563963	77	2.1	77	97	0	298	27	3	20	48	1.67
31564166--31564234	10	7.4	9	83	6	68	65	4	0	30	1.12
31572181--31572358	27	6.6	27	83	3	205	26	15	28	29	1.96
31572182--31572337	82	1.9	81	88	3	233	26	15	28	29	1.96
31572178--31572358	82	2.2	81	83	2	229	27	15	27	29	1.96
31580285--31580462	27	6.6	27	82	3	196	27	15	27	29	1.96
31580286--31580441	82	1.9	81	86	3	224	27	15	27	29	1.96
31580282--31580462	82	2.2	81	82	2	220	27	15	27	29	1.96
31590914--31590956	21	2.0	21	86	4	59	39	18	11	30	1.86
31590958--31590995	17	2.5	15	87	12	51	34	15	10	39	1.82
31590956--31591033	19	4.2	19	91	3	124	35	16	11	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31591549--31591821	86	3.1	86	66	18	220	25	19	20	34	1.96
31591490--31591873	175	2.2	175	92	0	624	25	20	20	34	1.96
31592088--31592225	38	3.6	38	72	21	133	21	23	25	28	1.99
31591963--31592564	79	7.4	79	85	7	733	23	22	23	30	1.99
31591963--31592564	166	3.7	159	84	7	730	23	22	23	30	1.99
31592011--31592564	245	2.3	245	92	0	941	24	22	23	29	1.99
31593511--31593578	7	10.8	6	80	16	59	2	14	0	82	0.79
31593512--31593573	12	4.8	13	72	25	51	3	16	0	80	0.83
31593527--31593575	25	2.0	26	88	8	75	4	12	0	83	0.77
31595369--31595419	23	2.3	23	87	12	72	31	7	0	60	1.25
31597231--31597272	20	2.2	19	87	12	59	30	4	0	64	1.14
31597231--31597272	19	2.2	18	87	12	57	30	4	0	64	1.14
31597380--31597570	16	11.2	16	67	24	72	32	5	1	61	1.25
31597390--31597492	38	2.7	37	80	15	113	32	2	0	64	1.15
31597544--31597594	22	2.3	23	80	13	61	25	5	3	64	1.33
31605660--31605689	5	6.0	5	100	0	60	40	20	0	40	1.52
31605641--31605741	19	5.2	19	82	7	105	36	19	6	36	1.79
31606764--31606797	8	4.4	8	85	7	52	61	0	0	38	0.96
31606799--31606845	24	1.9	24	86	4	67	78	4	6	10	1.06
31606814--31606847	15	2.2	16	89	5	52	82	2	5	8	0.93
31606799--31606846	25	1.9	25	83	8	62	79	4	6	10	1.05
31610860--31610977	40	3.0	40	92	0	191	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31612471--31612506	18	2.0	18	100	0	72	50	11	16	22	1.77
31616033--31616070	20	1.9	20	88	0	58	10	2	47	39	1.52
31619183--31619212	6	5.0	6	100	0	60	50	0	0	50	1.00
31621491--31621524	14	2.5	13	86	9	50	11	8	11	67	1.42
31629258--31629353	48	2.0	48	81	6	113	30	31	16	21	1.96
31630887--31631005	54	2.2	54	98	0	229	17	20	42	20	1.90
31630995--31631034	17	2.3	18	91	4	64	15	27	45	12	1.82
31631925--31631985	19	3.3	18	72	6	50	37	11	8	42	1.71
31635582--31636347	176	4.4	174	87	4	972	27	24	17	30	1.97
31636000--31636271	88	3.1	88	64	12	223	27	24	16	30	1.96
31636306--31636756	176	2.6	177	74	11	467	27	23	20	28	1.99
31636954--31637129	64	2.9	61	84	6	239	36	13	18	31	1.89
31638136--31638195	16	3.8	16	77	18	63	8	6	5	80	1.03
31638143--31638181	9	4.2	9	80	6	51	5	7	2	84	0.84
31638143--31638195	18	3.0	17	83	8	54	7	5	3	83	0.92
31645603--31645653	20	2.6	19	84	12	59	78	9	1	9	1.04
31645620--31645644	13	1.9	13	100	0	50	88	8	0	4	0.64
31648894--31648990	50	2.0	49	83	6	124	39	10	11	39	1.75
31652432--31652646	111	1.9	111	85	1	297	48	15	19	16	1.81
31654151--31654179	14	2.0	15	93	6	51	31	0	0	68	0.89
31654263--31654310	21	2.2	21	77	3	51	58	4	8	29	1.46
31655848--31655983	10	13.4	10	67	17	59	61	2	4	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31661226--31661268	19	2.3	19	84	8	52	32	4	11	51	1.59
31665857--31665966	26	4.2	26	97	0	202	37	25	4	32	1.76
31679855--31679958	43	2.4	43	83	0	127	37	25	15	22	1.93
31679764--31680013	130	1.9	132	87	1	369	35	23	21	20	1.96
31680118--31680367	130	1.9	132	87	1	369	35	23	21	20	1.96
31679743--31682693	354	8.3	354	99	0	5893	35	22	21	20	1.96
31680472--31680721	130	1.9	132	87	1	369	35	23	21	20	1.96
31680826--31681075	130	1.9	132	87	1	369	35	23	21	20	1.96
31681180--31681429	130	1.9	132	87	1	369	35	23	21	20	1.96
31681534--31681783	130	1.9	132	87	1	369	35	23	21	20	1.96
31681888--31682137	130	1.9	132	87	1	369	35	23	21	20	1.96
31682242--31682491	130	1.9	132	87	1	369	35	23	21	20	1.96
31685553--31685581	7	4.3	7	91	8	51	86	0	0	13	0.58
31685553--31685581	13	2.1	14	93	6	51	86	0	0	13	0.58
31685704--31685765	19	3.2	19	95	4	106	37	9	17	35	1.83
31687991--31688075	30	2.9	30	84	13	122	45	5	0	48	1.26
31687998--31688063	29	2.4	29	80	14	86	45	4	0	50	1.22
31693327--31693370	19	2.3	19	84	11	54	72	2	18	6	1.17
31694130--31694443	45	6.7	45	74	14	197	29	25	15	30	1.96
31694170--31694448	96	2.9	94	87	4	387	29	25	14	30	1.95
31699270--31699303	13	2.6	13	100	0	68	5	32	11	50	1.63
31707772--31707879	26	4.2	26	92	0	180	32	6	24	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31713873--31713935	26	2.4	26	81	7	74	34	26	11	26	1.90
31714237--31714281	20	2.3	20	84	3	56	26	15	28	28	1.96
31714310--31714423	28	3.9	28	71	19	81	26	21	27	25	1.99
31714302--31714446	61	2.4	61	85	8	179	26	20	26	26	1.99
31715200--31715232	18	1.9	17	88	11	50	42	12	15	30	1.83
31719406--31719449	21	2.1	21	86	0	61	27	18	27	27	1.98
31721163--31721257	49	2.0	49	83	4	122	33	8	22	35	1.84
31722703--31722787	30	2.9	30	84	13	122	48	0	5	45	1.26
31722887--31722924	5	7.6	5	82	11	51	44	0	0	55	0.99
31725635--31725715	35	2.3	36	91	2	128	37	13	11	38	1.80
31725635--31725723	17	4.9	19	82	10	116	37	14	10	38	1.80
31726279--31726654	83	4.5	83	93	2	605	27	20	19	33	1.96
31726590--31727171	119	4.9	119	95	0	1011	29	18	17	33	1.95
31728160--31728226	23	3.0	23	84	4	75	2	19	0	77	0.89
31728167--31728227	24	2.6	23	85	10	79	1	14	0	83	0.72
31728169--31728226	15	3.8	15	80	17	66	1	15	0	82	0.74
31728167--31728231	23	2.9	22	88	6	87	1	13	0	84	0.69
31731130--31731159	15	2.0	15	93	0	51	43	16	26	13	1.85
31733933--31733993	17	3.5	17	71	24	56	65	0	1	32	1.02
31734465--31734545	35	2.3	36	95	2	146	35	14	12	37	1.84
31734465--31734553	17	4.9	19	86	10	134	35	15	11	37	1.84
31735707--31735829	61	2.0	61	95	0	219	50	11	10	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31742024--31742121	27	3.5	28	86	5	119	33	28	13	24	1.93
31742023--31742121	28	3.5	28	86	5	112	33	29	13	24	1.93
31743363--31743712	176	2.0	176	98	0	675	32	29	6	32	1.84
31749744--31749811	29	2.3	28	80	12	82	57	5	7	29	1.50
31751363--31751417	28	2.0	28	96	0	101	29	16	21	32	1.95
31754165--31754378	46	4.7	46	84	6	242	39	12	27	21	1.88
31754171--31754348	89	2.0	90	87	5	261	37	13	28	20	1.90
31754178--31754374	89	2.2	89	83	6	252	39	13	27	20	1.89
31755599--31755641	23	1.9	22	86	13	61	16	2	51	30	1.57
31780564--31780596	17	2.0	17	94	5	59	36	15	0	48	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186