genome.fa.s20.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  180  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59655741--59655804	18	3.6	18	85	6	76	73	0	1	25	0.92
59655747--59655803	12	4.8	12	89	8	82	71	0	0	28	0.86
59656895--59657341	64	7.0	64	93	0	732	31	17	13	37	1.89
59657809--59657905	44	2.2	45	82	14	114	29	15	25	28	1.96
59657454--59658679	177	7.0	175	81	5	1226	29	18	25	26	1.98
59657496--59658705	354	3.5	352	84	4	1513	29	18	24	26	1.98
59664574--59664795	111	2.0	111	99	0	435	34	14	13	38	1.85
59676387--59676560	69	2.5	69	82	7	192	30	14	22	32	1.94
59676578--59676716	74	1.9	74	95	0	251	32	17	20	28	1.96
59677771--59677815	22	2.0	22	100	0	90	46	0	4	48	1.22
59678975--59679032	13	4.5	13	78	8	57	62	1	0	36	1.06
59678977--59679036	27	2.2	26	83	13	77	65	1	0	33	1.03
59691155--59691226	35	2.1	35	97	0	135	23	8	29	38	1.84
59693194--59693407	43	5.0	43	81	7	213	25	15	26	32	1.96
59694676--59694701	12	2.2	12	100	0	52	23	0	26	50	1.50
59699152--59699566	56	7.4	55	84	8	552	28	13	24	33	1.94
59699151--59699566	168	2.5	169	89	6	625	28	13	24	33	1.94
59704753--59704778	13	2.0	13	100	0	52	30	7	23	38	1.83
59705915--59706036	56	2.2	56	89	5	185	27	15	23	33	1.95
59706015--59706050	15	2.4	15	90	0	63	27	16	19	36	1.93
59706256--59706291	15	2.4	15	90	0	63	27	16	19	36	1.93
59705970--59706451	241	2.0	241	99	0	955	31	12	23	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59710342--59710391	22	2.3	22	92	0	82	26	10	24	40	1.86
59715186--59715313	64	2.0	64	98	0	247	23	12	17	46	1.83
59729296--59729322	13	2.1	13	100	0	54	37	29	0	33	1.58
59733641--59733671	15	2.1	15	100	0	62	54	6	25	12	1.62
59735266--59735376	37	3.0	37	90	2	170	29	32	16	21	1.95
59735289--59735404	37	3.1	37	88	0	133	25	31	17	25	1.97
59735266--59735404	74	1.9	74	81	3	172	28	30	16	24	1.96
59735559--59735695	46	3.0	46	89	0	202	25	32	8	33	1.87
59735701--59736586	47	18.8	47	98	0	1666	25	31	14	28	1.95
59736539--59736616	25	3.2	25	65	17	65	32	28	6	33	1.82
59747465--59747689	48	4.7	47	77	6	195	24	25	22	27	2.00
59754705--59754850	40	3.6	41	83	9	185	23	22	27	26	1.99
59759910--59761177	46	27.6	46	96	0	2182	20	23	15	41	1.90
59769422--59769597	46	3.8	46	73	12	162	23	19	27	29	1.98
59772531--59772595	15	4.4	15	77	9	71	10	15	13	60	1.60
59772527--59772595	30	2.3	31	82	9	90	10	14	17	57	1.63
59781563--59781628	33	2.0	33	90	0	105	18	39	21	21	1.93
59782058--59782101	22	2.0	22	86	0	61	52	4	0	43	1.22
59785441--59785485	21	2.1	22	83	4	56	20	4	20	55	1.60
59787185--59787234	23	2.1	24	85	10	68	50	4	6	40	1.46
59793870--59793928	17	3.5	17	80	13	68	27	0	5	67	1.11
59794164--59794385	107	2.1	107	97	0	417	33	8	16	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59795692--59795729	18	2.1	18	90	0	58	44	13	18	23	1.85
59799214--59799276	21	3.0	20	71	11	56	25	7	11	55	1.62
59803549--59804227	47	14.3	47	92	1	1009	32	9	29	27	1.89
59812555--59812670	43	2.7	42	80	12	112	25	15	26	32	1.95
59816282--59816314	16	2.0	17	88	5	50	36	21	0	42	1.53
59816790--59816834	3	15.0	3	81	9	56	60	2	0	37	1.09
59817245--59817295	11	5.1	11	80	17	58	54	1	0	43	1.11
59817251--59817295	16	2.9	16	80	12	58	53	2	0	44	1.13
59823870--59823920	22	2.3	21	80	9	57	45	1	1	50	1.24
59827893--59827938	23	2.0	23	91	0	74	34	17	26	21	1.95
59831462--59831617	43	3.6	44	82	6	194	26	14	24	33	1.94
59831459--59831617	86	1.8	86	86	2	230	27	14	23	33	1.94
59835122--59835146	10	2.5	10	100	0	50	24	0	0	76	0.80
59835592--59835637	19	2.3	20	85	10	60	32	0	4	63	1.14
59837384--59837482	23	4.3	23	78	8	105	34	20	20	25	1.96
59837385--59837482	46	2.2	46	85	5	128	34	20	19	25	1.96
59839457--59839499	20	2.2	20	95	0	77	51	18	4	25	1.66
59842314--59842465	82	1.9	82	81	5	182	36	7	7	48	1.58
59846388--59846559	92	1.9	91	81	3	211	36	19	8	35	1.83
59846618--59846672	19	2.8	20	81	10	60	63	1	0	34	1.05
59846590--59846692	46	2.2	47	80	13	115	59	2	0	36	1.19
59846591--59846737	9	15.9	9	68	20	54	63	2	2	31	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59846696--59846752	28	2.0	28	89	0	87	73	0	5	21	1.02
59846695--59846752	9	6.4	9	78	6	64	72	0	5	22	1.04
59847950--59847974	7	3.6	7	100	0	50	48	0	12	40	1.40
59853496--59853534	17	2.2	17	86	4	51	43	0	0	56	0.99
59855277--59855306	8	3.8	8	90	0	51	83	0	16	0	0.65
59855427--59855753	106	3.1	103	77	13	353	28	0	12	58	1.37
59855831--59855869	19	2.0	20	90	5	62	12	23	20	43	1.86
59856807--59856835	13	2.1	14	93	6	51	55	10	0	34	1.34
59864052--59864086	16	2.1	17	94	5	63	68	5	0	25	1.11
59864197--59864252	26	2.3	24	84	9	69	50	3	5	41	1.43
59864214--59864258	17	2.7	18	73	13	51	51	2	2	44	1.26
59865324--59865355	14	2.3	14	94	0	55	15	6	56	21	1.62
59865877--59865938	7	8.7	7	75	15	56	30	38	1	29	1.67
59865877--59865938	22	2.9	22	80	4	74	30	38	1	29	1.67
59865988--59866021	15	2.4	14	90	5	50	41	29	2	26	1.70
59865988--59866021	7	4.7	7	85	7	50	41	29	2	26	1.70
59866107--59866146	14	2.9	14	80	0	53	47	30	0	22	1.52
59870206--59870303	23	4.3	23	89	2	153	31	25	22	20	1.98
59870213--59870301	45	2.0	45	93	0	151	31	25	23	19	1.98
59874976--59875188	48	4.5	47	80	10	213	43	9	10	36	1.72
59878195--59878230	7	5.1	7	100	0	72	41	13	0	44	1.44
59878814--59878866	26	2.0	28	85	7	74	49	9	5	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59880079--59880105	9	3.0	9	100	0	54	22	0	0	77	0.76
59881495--59881539	22	2.0	22	83	8	56	33	13	2	51	1.53
59881971--59882414	113	3.9	113	100	0	888	31	20	14	33	1.92
59889005--59889100	27	3.6	27	84	9	115	18	20	19	40	1.91
59892756--59892818	30	2.1	30	96	0	117	23	3	15	57	1.53
59895772--59895810	21	1.9	20	84	5	51	33	7	15	43	1.75
59901553--59901664	39	2.9	37	75	16	104	54	3	3	38	1.35
59902107--59902133	14	1.9	14	100	0	54	37	7	0	55	1.28
59903245--59903276	15	2.1	15	94	0	55	68	9	6	15	1.36
59915998--59916694	348	2.0	348	99	0	1385	35	18	23	22	1.95
59917708--59917970	44	5.9	45	73	9	200	27	15	29	26	1.96
59917652--59917976	177	1.8	177	90	1	526	26	17	27	28	1.97
59917742--59918187	133	3.4	132	71	13	294	28	18	25	26	1.98
59919009--59919047	17	2.3	17	95	0	69	64	7	10	17	1.48
59919907--59919931	5	5.0	5	100	0	50	20	0	0	80	0.72
59922354--59922406	28	1.9	27	84	3	70	26	26	18	28	1.98
59922494--59922549	20	2.8	20	83	2	69	33	23	16	26	1.95
59930867--59930970	55	1.9	55	80	4	120	14	25	31	27	1.95
59937258--59937314	25	2.3	25	96	0	105	19	15	24	40	1.90
59937283--59937366	41	2.0	41	86	8	118	17	21	25	35	1.95
59939785--59939825	12	3.2	13	86	10	57	68	0	0	31	0.90
59941156--59941891	40	18.2	40	85	3	893	34	24	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59941156--59941891	81	9.1	80	86	3	913	34	24	16	24	1.96
59942181--59942243	21	3.0	21	76	2	54	50	23	0	25	1.49
59942418--59942504	43	2.1	41	85	10	117	26	4	25	43	1.74
59943565--59943675	40	2.8	41	84	5	147	35	17	20	27	1.95
59946476--59946520	22	2.0	22	95	0	81	55	6	8	28	1.56
59950993--59951037	20	2.3	20	88	3	65	24	17	31	26	1.97
59955059--59955103	20	2.3	20	88	3	65	24	17	31	26	1.97
59955094--59955244	60	2.5	62	84	9	179	28	19	25	27	1.98
59955132--59955225	28	3.2	28	72	21	93	26	18	28	26	1.98
59956345--59957038	110	6.4	112	89	6	958	25	1	15	57	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186