genome.fa.s20.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  167  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55471648--55471808	47	3.6	46	69	18	140	48	3	3	45	1.34
55477344--55477554	107	2.0	105	89	1	323	36	18	15	30	1.92
55477760--55477801	22	2.0	22	85	4	59	71	0	2	26	0.98
55484727--55484928	101	2.0	100	90	0	314	26	29	11	32	1.92
55490784--55490864	41	2.0	41	90	0	126	40	2	13	43	1.57
55493917--55494415	100	5.0	100	89	1	685	23	26	22	28	1.99
55493941--55494463	50	10.5	50	68	2	282	22	26	22	28	1.99
55495786--55495828	21	2.0	21	90	0	68	4	32	0	62	1.15
55495802--55495834	15	2.1	16	88	11	50	3	24	0	72	0.98
55503009--55503552	271	2.0	272	97	1	1020	30	21	15	31	1.95
55503873--55503911	16	2.2	19	86	13	57	61	0	5	33	1.18
55505180--55505417	41	5.8	41	97	0	395	29	21	22	27	1.99
55505632--55505695	33	2.0	32	90	3	101	26	9	25	39	1.86
55505639--55505712	33	2.3	33	80	2	87	28	8	25	37	1.84
55511601--55511639	16	2.2	19	86	13	57	61	0	5	33	1.18
55512531--55512556	12	2.2	12	100	0	52	42	0	7	50	1.31
55513195--55513389	41	4.8	41	98	0	372	24	21	28	26	1.99
55539281--55539320	20	2.0	20	100	0	80	65	5	20	10	1.42
55539282--55539326	20	2.3	20	92	3	74	68	4	20	6	1.29
55540689--55540731	13	3.1	14	84	12	54	60	0	0	39	0.97
55542759--55542924	54	3.1	54	91	0	260	25	12	13	48	1.76
55547192--55547382	96	2.0	96	97	0	364	32	16	26	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55548856--55549162	44	6.8	42	70	19	185	45	3	3	46	1.37
55548856--55549231	91	4.1	91	95	0	646	46	3	3	46	1.37
55549229--55549327	28	3.6	28	72	10	96	45	2	1	51	1.19
55548856--55549281	91	4.7	88	87	7	432	46	3	3	47	1.35
55549264--55549559	120	2.5	120	92	1	477	43	3	4	48	1.40
55549334--55549524	61	3.2	60	69	16	169	41	4	5	48	1.46
55549509--55549550	15	2.9	15	82	10	52	47	0	0	52	1.00
55549971--55550020	22	2.4	21	81	15	59	10	10	8	72	1.30
55550665--55550738	33	2.5	26	72	27	76	45	9	18	25	1.80
55550677--55550742	33	2.0	33	100	0	132	45	9	15	30	1.77
55551648--55551700	22	2.4	23	78	9	56	28	20	1	49	1.60
55551676--55551780	51	2.1	50	83	5	131	27	22	1	47	1.62
55551777--55551816	17	2.4	17	86	0	53	30	0	0	70	0.88
55551789--55551820	9	3.7	9	95	4	57	25	0	0	75	0.81
55553858--55553903	21	2.2	21	84	0	56	39	34	21	4	1.73
55554145--55555351	22	55.9	21	77	11	897	45	29	1	24	1.61
55554145--55555355	43	28.0	43	78	8	1087	45	28	1	24	1.61
55554167--55555355	21	55.1	21	80	6	1150	45	28	1	24	1.61
55558528--55559093	126	4.5	124	82	4	679	30	22	16	30	1.96
55558528--55559093	250	2.3	250	86	2	771	30	22	16	30	1.96
55559584--55559671	45	2.0	45	83	0	113	61	4	13	20	1.50
55563084--55563122	20	2.0	20	89	0	60	64	0	2	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55564101--55564224	39	3.0	41	88	6	173	61	0	2	36	1.09
55564157--55564226	29	2.4	29	81	6	79	60	0	2	37	1.12
55566089--55566125	18	2.1	18	90	5	58	54	16	5	24	1.63
55566907--55567111	109	1.9	106	85	3	284	37	18	14	29	1.91
55567875--55567969	3	30.7	3	76	8	75	62	4	6	27	1.38
55569473--55569675	110	1.8	111	87	3	300	30	19	18	32	1.96
55569702--55570103	128	3.1	128	89	0	626	25	21	20	31	1.98
55570106--55571033	88	10.6	88	88	1	1270	24	24	24	26	2.00
55570278--55570502	44	5.1	43	67	15	120	23	26	24	26	2.00
55572266--55572306	7	6.0	7	88	5	57	14	9	0	75	1.04
55575422--55575464	19	2.3	17	78	21	50	41	11	23	23	1.87
55577560--55577620	27	2.3	27	80	8	72	49	4	8	37	1.54
55577828--55577937	3	35.7	3	79	7	105	62	3	5	28	1.34
55579920--55580139	94	2.3	94	81	6	255	40	3	12	43	1.58
55582286--55582510	72	3.1	72	67	16	201	36	21	16	25	1.94
55582229--55582523	146	2.0	146	94	0	518	40	20	14	24	1.90
55583065--55583109	14	3.2	14	83	0	54	48	42	0	8	1.34
55583295--55583343	14	3.6	13	81	15	55	51	26	2	20	1.59
55583307--55583343	13	2.8	13	87	4	56	51	27	0	21	1.48
55583727--55584246	114	4.6	114	89	1	747	26	21	17	34	1.95
55583730--55584246	229	2.3	228	88	0	622	26	21	17	34	1.95
55585418--55585458	8	5.0	8	94	5	73	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55586400--55586462	22	2.6	24	85	14	94	17	25	17	39	1.91
55607181--55607217	18	2.1	18	90	10	58	32	0	5	62	1.18
55610752--55610827	38	2.0	38	89	0	116	32	11	28	26	1.92
55613886--55613961	25	3.1	25	73	7	84	38	17	22	22	1.93
55621298--55621336	20	2.0	20	89	0	60	64	0	7	28	1.21
55621261--55621330	29	2.4	28	76	9	70	60	2	2	34	1.26
55622446--55622569	30	4.1	30	93	1	203	25	24	6	43	1.78
55622456--55622563	15	7.2	15	67	12	78	25	22	7	44	1.79
55624587--55624645	20	3.0	21	81	13	65	57	1	5	35	1.31
55625823--55625871	23	2.1	23	84	0	62	8	8	10	73	1.25
55630322--55630391	29	2.4	28	76	9	70	60	2	2	34	1.26
55646662--55646698	18	2.0	19	89	5	58	56	2	0	40	1.13
55648477--55648526	15	3.1	16	78	16	50	48	2	0	50	1.12
55648490--55648537	22	2.0	25	84	11	66	47	2	2	47	1.25
55652285--55652345	31	1.9	33	90	6	99	27	1	18	52	1.54
55653292--55653340	24	2.0	24	85	14	66	73	4	0	22	1.00
55665886--55666067	92	2.1	83	82	11	204	39	18	9	32	1.83
55666226--55666274	19	2.6	19	87	6	64	67	0	2	30	1.02
55666359--55666411	20	2.7	20	88	2	81	69	0	3	26	1.05
55666622--55666680	9	6.4	9	77	16	59	23	1	1	72	1.02
55666623--55666736	19	6.3	17	73	18	63	27	0	3	68	1.11
55666623--55666736	10	12.5	10	70	18	52	27	0	3	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55666642--55666737	18	5.3	18	75	10	70	27	1	3	68	1.11
55666841--55667069	87	2.6	87	79	10	225	34	9	19	36	1.84
55688740--55688789	13	3.2	16	72	18	52	52	0	0	48	1.00
55688732--55688789	29	2.0	30	82	3	73	50	1	0	48	1.11
55688832--55688898	21	3.0	22	78	14	66	44	2	4	47	1.38
55693264--55693308	22	2.0	22	100	0	90	44	0	13	42	1.43
55693476--55693547	28	2.6	28	84	8	85	44	0	4	51	1.20
55693709--55693743	18	2.0	17	88	5	52	45	0	0	54	0.99
55693713--55693785	28	2.7	27	76	8	76	45	0	2	52	1.15
55693905--55693999	45	2.1	45	88	1	138	32	27	5	34	1.79
55693980--55694031	16	3.2	16	94	0	86	34	36	0	28	1.58
55704167--55704196	16	1.9	16	93	6	53	66	0	3	30	1.07
55705093--55705122	10	3.0	10	100	0	60	40	40	10	10	1.72
55705743--55706004	129	2.0	129	85	1	346	30	24	18	27	1.98
55705968--55706093	44	2.9	43	78	7	121	23	25	22	29	1.99
55706273--55706535	87	3.0	87	91	0	427	26	24	20	28	1.99
55706345--55706481	43	3.2	43	64	20	104	25	23	24	27	2.00
55708110--55708150	20	2.0	20	85	9	55	7	17	0	75	1.02
55719524--55719549	13	2.0	13	100	0	52	15	38	15	30	1.88
55724868--55724971	49	2.1	49	89	0	154	31	7	9	50	1.63
55726452--55726586	18	7.9	18	71	17	99	40	0	2	57	1.17
55726372--55726568	59	3.3	58	69	14	177	42	1	3	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55726819--55726854	16	2.2	16	95	0	63	22	30	5	41	1.76
55729555--55729690	69	2.0	69	85	7	188	22	9	13	55	1.66
55734650--55734699	20	2.5	20	93	0	82	26	6	36	32	1.81
55735638--55735812	91	1.9	90	81	5	210	39	15	10	34	1.81
55735933--55735967	7	4.9	7	96	3	61	85	0	0	14	0.59
55735951--55736027	28	2.8	26	79	14	84	64	0	1	33	1.01
55735951--55736014	28	2.3	29	86	5	87	65	0	0	34	0.93
55736054--55736137	29	2.8	30	73	16	77	57	2	8	32	1.41
55736097--55736147	19	2.6	20	84	3	68	66	0	3	29	1.09
55746312--55746345	4	8.0	4	90	9	50	23	0	2	73	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186