genome.fa.s20.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  177  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58686263--58686305	9	4.8	9	88	0	68	9	13	23	53	1.69
58689265--58689296	15	2.1	15	94	0	55	71	0	9	18	1.12
58693105--58693183	26	3.1	26	70	17	67	69	0	3	26	1.05
58693141--58693174	16	2.2	16	89	5	52	70	0	0	29	0.87
58693733--58693773	22	1.9	22	85	5	57	56	4	0	39	1.21
58694076--58694133	24	2.4	25	77	13	68	43	0	0	56	0.99
58705583--58705854	136	2.0	136	97	0	508	28	13	25	32	1.94
58705883--58705909	13	2.1	13	100	0	54	40	14	22	22	1.90
58706262--58706317	25	2.5	21	74	20	58	33	26	8	30	1.87
58706267--58706316	25	2.0	25	100	0	100	36	24	8	32	1.84
58706693--58706740	21	2.4	21	86	13	66	47	2	10	39	1.49
58708022--58708097	38	2.0	38	100	0	152	31	10	15	42	1.81
58709276--58709330	24	2.3	23	81	9	65	27	5	7	60	1.46
58713084--58713131	19	2.5	19	86	6	62	31	18	4	45	1.68
58721350--58721812	45	10.2	45	68	17	199	30	20	21	28	1.98
58721351--58721812	227	2.0	225	86	5	637	30	20	21	28	1.98
58723395--58723478	24	3.7	23	72	16	68	20	3	3	72	1.15
58723672--58723711	22	1.9	21	85	10	55	37	12	0	50	1.41
58726151--58726196	23	2.0	23	84	12	60	45	10	6	36	1.65
58726158--58726202	23	2.0	23	82	8	56	40	13	8	37	1.76
58733636--58733676	20	2.0	21	85	4	57	9	21	2	65	1.34
58749031--58749062	14	2.4	13	90	10	55	18	6	12	62	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58750653--58751488	418	2.0	418	99	0	1645	34	21	6	37	1.79
58752322--58752361	21	1.9	21	89	0	62	20	15	7	57	1.61
58758202--58758226	12	2.1	12	100	0	50	40	8	0	52	1.31
58760022--58760080	2	29.5	2	100	0	118	0	49	0	50	1.00
58765452--58765490	15	2.6	15	79	0	51	30	33	20	15	1.94
58765589--58765634	22	2.1	22	91	0	74	28	13	23	34	1.92
58765768--58766087	58	5.6	58	74	8	260	28	23	22	25	1.99
58765767--58766106	87	4.0	87	71	4	267	28	23	22	25	1.99
58765718--58766139	29	14.3	29	71	8	235	29	23	22	24	1.99
58770597--58770630	11	3.1	11	86	0	50	79	0	17	2	0.86
58771125--58771157	13	2.3	15	90	10	52	48	6	0	45	1.27
58772699--58772737	21	1.9	20	84	5	51	38	2	0	58	1.12
58778535--58778586	26	2.0	26	82	14	63	36	1	9	51	1.46
58780736--58780780	20	2.2	20	84	4	54	51	8	15	24	1.72
58780837--58780883	20	2.3	21	88	3	69	59	4	14	21	1.52
58782947--58783044	50	2.0	50	91	2	162	30	15	22	31	1.95
58784156--58784224	20	3.5	20	81	0	75	49	5	17	27	1.69
58784134--58784243	40	2.7	41	75	12	111	48	6	20	25	1.73
58784137--58784242	20	5.3	19	75	6	68	48	5	20	25	1.72
58785007--58785045	21	1.9	21	94	5	71	51	10	12	25	1.71
58785007--58785063	20	2.8	20	84	10	71	50	10	12	26	1.72
58794557--58794629	6	11.5	6	76	11	65	78	4	5	12	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58794557--58794615	19	3.0	19	85	9	66	79	5	1	13	0.97
58794557--58794612	13	4.2	13	78	13	51	80	5	1	12	0.96
58796077--58796120	19	2.4	19	80	3	54	70	2	6	20	1.21
58796617--58796659	13	3.2	13	86	3	59	72	0	25	2	0.97
58804503--58804678	37	4.8	37	96	0	298	39	13	21	26	1.90
58804641--58804764	46	2.8	46	91	3	200	33	16	22	27	1.96
58812197--58812372	37	4.8	37	96	0	298	39	13	21	26	1.90
58812335--58812458	46	2.8	46	91	3	200	33	16	22	27	1.96
58822470--58822581	45	2.5	45	78	7	129	37	16	22	24	1.93
58822979--58823018	13	2.8	15	77	14	57	57	0	7	35	1.27
58823946--58824023	36	2.2	36	97	2	149	42	5	24	28	1.76
58824454--58824506	20	2.6	21	82	11	65	18	18	15	47	1.83
58824481--58824561	42	1.9	42	84	0	108	23	22	11	43	1.85
58824489--58824565	21	3.7	20	68	16	57	22	20	12	44	1.86
58824483--58824595	42	2.7	42	79	5	104	23	25	11	38	1.89
58825637--58825785	73	2.0	73	90	0	235	34	5	18	40	1.74
58828243--58828285	3	14.3	3	100	0	86	67	0	0	32	0.91
58828911--58828989	39	2.0	39	97	0	149	48	3	17	30	1.65
58837485--58837517	16	2.1	16	88	11	50	27	6	9	57	1.53
58851302--58851347	17	2.8	18	84	15	64	28	41	30	0	1.56
58851373--58851466	44	2.1	44	86	11	129	37	26	3	32	1.73
58851448--58851503	16	3.5	16	95	0	94	30	28	7	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58855511--58855556	17	2.6	19	83	10	62	71	0	19	8	1.11
58855508--58855555	21	2.5	19	83	10	53	70	0	20	8	1.12
58855823--58855915	27	3.2	31	80	13	99	47	15	10	26	1.78
58856065--58856213	3	50.0	3	98	1	291	66	0	33	0	0.92
58857094--58857126	17	1.9	17	93	0	57	0	24	0	75	0.80
58857652--58857691	20	2.0	20	100	0	80	20	10	10	60	1.57
58877305--58877336	14	2.3	14	100	0	64	46	6	21	25	1.74
58878674--58878778	43	2.5	43	82	1	113	20	15	30	33	1.94
58878699--58878786	43	2.1	42	89	2	131	19	14	31	34	1.92
58888509--58888571	24	2.4	25	82	12	65	36	4	3	55	1.37
58892066--58892106	20	2.0	22	85	9	59	41	4	7	46	1.53
58898696--58898753	20	2.9	19	71	14	55	62	0	3	34	1.12
58898732--58898777	23	2.0	23	86	0	65	67	0	0	32	0.91
58900640--58900690	13	3.9	13	78	0	57	27	9	25	37	1.87
58909083--58909129	14	3.1	15	79	17	53	48	0	0	51	1.00
58909230--58909281	20	2.6	20	90	6	79	44	0	5	50	1.26
58911157--58911292	46	3.0	46	87	2	184	42	15	21	20	1.89
58912425--58912862	222	2.0	216	85	5	592	32	12	21	34	1.90
58915002--58915073	25	3.0	23	77	18	67	62	5	0	31	1.18
58915041--58915073	8	4.2	8	88	7	50	66	0	0	33	0.92
58915009--58915074	20	3.3	20	76	14	64	65	4	0	30	1.13
58915125--58915185	28	2.2	28	82	5	70	62	1	3	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58915132--58915207	23	3.4	22	77	15	75	63	1	2	32	1.17
58915181--58915213	15	2.2	15	89	10	50	66	0	0	33	0.92
58915933--58915977	7	6.3	7	80	14	56	82	0	2	15	0.77
58915930--58915973	21	2.1	21	100	0	88	81	0	4	13	0.83
58915933--58915977	15	3.1	14	81	12	56	82	0	2	15	0.77
58926778--58926841	14	4.6	14	70	14	60	45	0	1	53	1.10
58936924--58936957	17	2.0	17	100	0	68	58	5	0	35	1.22
58955784--58955816	13	2.6	13	90	4	50	39	0	12	48	1.40
58961123--58961197	24	3.3	22	81	9	78	17	5	1	76	1.05
58961113--58961187	6	12.5	6	83	7	82	17	4	1	77	0.99
58961120--58961157	16	2.4	15	87	12	58	18	2	0	78	0.86
58961123--58961207	6	15.6	5	75	20	57	17	4	1	76	1.02
58961114--58961207	18	5.2	18	79	14	72	19	4	1	75	1.03
58964111--58964143	13	2.6	13	90	4	50	39	0	12	48	1.40
58967162--58967257	38	2.5	38	84	0	120	18	17	27	36	1.94
58967238--58967279	22	1.9	22	100	0	84	23	14	21	40	1.90
58967246--58967321	38	2.0	38	84	0	98	22	19	23	34	1.97
58967198--58967313	60	1.9	60	91	3	189	20	18	24	37	1.94
58967162--58967343	98	1.9	98	84	0	247	19	17	26	36	1.94
58967246--58967361	38	3.1	38	76	5	90	22	18	24	34	1.96
58973357--58973383	13	2.1	13	100	0	54	14	33	37	14	1.88
58977979--58978026	21	2.2	22	81	3	53	20	12	6	60	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58978068--58978205	73	1.9	73	95	0	249	27	21	10	39	1.87
58986728--58986801	31	2.4	31	90	0	121	18	32	29	18	1.96
58987862--58988032	46	3.7	47	81	9	199	22	28	19	29	1.98
58993219--58993428	40	5.3	39	89	4	242	25	21	27	25	1.99
58993166--58993428	120	2.2	120	82	4	309	25	21	27	25	1.99
58993167--58993463	80	3.7	80	81	6	230	26	21	27	24	1.99
58997993--58998162	94	1.8	94	83	7	231	25	30	16	27	1.97
58998039--58998164	47	2.7	44	83	13	157	26	30	15	28	1.96
59014513--59014729	46	4.7	46	93	0	335	22	24	15	36	1.93
59014594--59014673	25	3.4	24	65	31	64	23	28	15	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186