genome.fa.s20.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  155  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51524514--51524936	48	8.9	48	83	7	445	25	27	19	27	1.99
51524514--51524929	144	2.9	145	83	5	524	25	27	19	27	1.99
51528639--51528753	44	2.6	44	85	2	149	35	13	22	27	1.92
51528639--51528772	46	3.0	45	82	4	153	35	14	23	26	1.93
51535291--51535685	47	8.4	47	97	0	718	31	8	30	29	1.87
51535804--51535882	37	2.1	37	90	0	122	24	18	31	25	1.98
51537748--51537850	43	2.4	43	100	0	206	22	15	35	26	1.94
51537832--51537905	29	2.6	29	89	4	105	25	16	32	25	1.96
51538297--51538453	40	3.9	40	91	0	242	26	22	26	24	2.00
51538218--51538447	80	2.9	80	82	5	234	26	23	26	23	2.00
51538218--51538453	120	2.0	120	84	5	307	26	22	27	24	2.00
51541188--51541376	79	2.4	81	84	7	251	24	22	26	25	2.00
51541190--51541376	40	4.7	40	86	5	245	24	22	27	25	2.00
51541245--51541409	79	2.1	79	85	6	219	25	21	27	26	1.99
51553404--51553537	48	2.8	48	80	4	155	23	29	18	27	1.98
51553403--51553570	48	3.5	48	73	14	134	24	28	20	26	1.99
51563203--51563343	48	2.9	48	78	8	160	30	19	26	22	1.98
51567328--51567353	12	2.2	12	100	0	52	7	38	38	15	1.76
51568262--51568322	20	3.0	19	72	13	59	36	18	29	16	1.92
51568259--51568348	41	2.2	41	91	0	144	33	16	30	20	1.94
51568282--51568348	21	3.2	21	69	12	66	31	16	31	20	1.95
51569578--51569641	25	2.6	24	85	7	83	75	4	18	1	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51569552--51569642	32	2.9	32	75	10	82	75	3	16	4	1.09
51570489--51570626	41	3.5	39	78	10	131	26	16	24	31	1.96
51570809--51570865	16	3.6	16	70	11	55	35	5	22	36	1.77
51575905--51575975	29	2.5	29	86	2	99	29	0	8	61	1.25
51577289--51577347	30	2.0	30	83	12	77	47	0	1	50	1.11
51577287--51577358	29	2.5	28	78	17	76	50	0	1	48	1.09
51577537--51577655	4	29.8	4	100	0	238	24	0	0	75	0.80
51582722--51582787	20	3.4	19	76	13	64	22	3	9	65	1.36
51584595--51584788	66	2.9	66	99	0	379	36	12	22	29	1.90
51586248--51586311	24	2.6	25	70	9	60	35	17	25	21	1.95
51586363--51586435	26	2.8	25	81	4	83	36	20	21	20	1.95
51586249--51586435	48	3.7	51	75	11	131	35	19	24	20	1.96
51588968--51588997	15	1.9	16	93	6	53	53	6	20	20	1.67
51591875--51591957	43	1.9	43	87	0	121	30	30	16	22	1.96
51598898--51598925	5	5.6	5	100	0	56	17	0	0	82	0.68
51602750--51602860	42	2.6	42	82	2	134	21	23	32	22	1.98
51615215--51615272	29	1.9	30	82	6	73	39	12	10	37	1.77
51615548--51615597	25	2.0	24	85	11	66	54	2	2	42	1.23
51630676--51630729	18	3.0	19	78	10	51	62	7	9	20	1.48
51631730--51631779	21	2.4	21	83	3	66	10	2	12	76	1.11
51637605--51637656	27	1.9	27	84	0	68	34	7	15	42	1.75
51643608--51643637	14	2.1	15	93	6	53	53	20	0	26	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51644317--51644366	20	2.5	20	84	9	66	22	24	0	54	1.45
51646592--51646675	25	3.4	25	71	0	69	33	27	20	19	1.96
51656155--51656195	19	2.2	18	86	4	55	58	0	14	26	1.37
51666595--51666739	40	3.6	40	85	4	193	26	24	26	23	2.00
51670383--51670538	43	3.6	42	77	13	140	33	26	16	22	1.95
51670387--51670538	42	3.6	41	78	7	151	33	26	17	23	1.96
51682223--51682441	40	5.5	40	87	5	286	23	21	26	27	1.99
51689952--51689977	3	8.7	3	100	0	52	69	0	0	30	0.89
51690072--51690138	24	2.9	23	82	10	66	74	2	7	14	1.16
51690092--51690138	24	2.0	24	87	8	69	76	2	4	17	1.04
51690125--51690225	15	7.1	14	67	29	54	67	0	1	30	1.02
51690191--51690240	22	2.3	21	80	12	57	74	2	0	24	0.93
51694141--51694201	30	2.0	30	87	6	88	13	24	34	27	1.93
51698812--51698857	21	2.1	22	84	4	58	45	2	4	47	1.34
51699650--51699766	58	2.0	58	96	3	218	41	6	5	47	1.52
51703284--51703320	13	2.8	13	87	4	56	29	0	8	62	1.24
51703284--51703317	14	2.5	14	90	4	52	32	0	8	58	1.29
51708296--51708453	44	3.7	42	73	16	139	24	18	25	30	1.98
51713882--51713933	22	2.3	23	80	6	70	50	0	1	48	1.12
51713883--51713931	17	2.8	17	84	9	64	48	0	2	48	1.12
51720428--51720473	24	1.9	24	82	8	58	32	17	8	41	1.80
51727261--51727287	8	3.4	8	100	0	54	55	0	11	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51730180--51730315	68	2.0	68	85	0	182	25	32	17	24	1.97
51730646--51730703	14	3.9	14	71	20	55	74	6	3	15	1.17
51731577--51731623	23	2.0	23	95	0	85	46	14	0	38	1.45
51738960--51739003	23	1.9	23	95	0	79	47	13	2	36	1.56
51738960--51739001	13	3.5	13	75	18	54	47	14	2	35	1.57
51738961--51739010	23	2.2	23	88	0	73	50	14	2	34	1.54
51745291--51745333	22	1.9	23	95	4	79	39	9	23	27	1.85
51745698--51745724	8	3.4	8	100	0	54	62	0	25	11	1.28
51752372--51752432	29	2.1	30	93	3	106	60	11	3	24	1.46
51761145--51761224	38	2.1	38	97	0	151	22	11	50	16	1.76
51761224--51761257	4	8.5	4	100	0	68	23	0	0	76	0.79
51761484--51762625	44	26.0	44	83	5	1156	25	24	18	31	1.97
51762741--51762927	68	2.8	68	90	1	277	25	21	22	29	1.99
51764435--51764464	6	5.0	6	100	0	60	0	33	16	50	1.46
51767242--51767288	19	2.5	20	89	6	71	42	8	21	27	1.81
51770095--51770181	38	2.3	38	93	0	147	21	12	47	18	1.82
51770778--51770823	23	2.0	23	95	0	83	30	2	17	50	1.58
51782150--51782191	16	2.8	15	75	10	50	73	0	26	0	0.83
51782103--51782911	228	3.5	227	85	4	1051	42	12	19	24	1.86
51783114--51783197	6	15.6	5	78	9	53	76	0	21	2	0.90
51783152--51783196	6	7.5	6	97	0	81	84	0	13	2	0.72
51783117--51783196	12	6.8	12	81	8	85	77	0	20	2	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51797062--51797235	35	5.0	35	91	2	269	41	19	7	31	1.79
51799772--51799797	9	2.9	9	100	0	52	34	19	23	23	1.96
51801800--51801869	20	3.4	20	86	4	95	38	20	30	11	1.87
51806784--51806822	13	2.9	14	84	7	53	69	15	0	15	1.20
51809607--51809641	18	1.9	18	94	0	61	11	37	28	22	1.89
51822486--51822584	27	3.7	27	83	0	117	35	37	15	12	1.84
51827460--51827526	33	2.0	33	100	0	134	23	20	5	49	1.71
51832270--51832302	16	2.1	16	94	0	57	51	33	3	12	1.54
51833547--51833583	15	2.4	16	90	4	58	51	16	24	8	1.71
51833686--51833733	19	2.6	19	86	3	62	29	16	35	18	1.93
51833808--51833919	29	4.0	27	73	12	91	27	13	32	26	1.94
51843991--51844015	12	2.1	12	100	0	50	44	0	24	32	1.54
51846115--51846234	46	2.6	46	87	0	168	30	25	21	22	1.99
51851728--51851850	30	4.1	29	84	5	138	47	15	17	18	1.82
51851749--51851825	6	12.8	6	84	10	104	49	14	16	19	1.80
51852171--51852222	27	1.9	27	84	7	70	36	13	23	26	1.92
51852352--51852434	27	3.1	26	87	5	112	37	21	21	19	1.94
51852633--51852828	27	7.3	27	84	0	212	26	18	18	36	1.94
51852833--51853134	27	11.2	27	82	4	313	41	9	21	27	1.84
51852838--51853134	54	5.5	54	86	2	373	41	9	21	27	1.84
51852833--51853131	81	3.7	81	84	4	370	42	9	21	27	1.83
51858981--51859037	27	2.1	27	93	0	96	26	15	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51863727--51863848	43	2.9	42	81	4	147	30	13	25	31	1.93
51863931--51863977	20	2.3	20	85	0	67	36	4	23	36	1.75
51867687--51867761	29	2.6	29	80	0	96	28	28	13	30	1.94
51868008--51868038	16	2.0	16	93	6	55	6	16	25	51	1.68
51869108--51869146	16	2.4	16	86	4	51	12	5	33	48	1.63
51869912--51870098	96	1.9	96	91	0	302	40	14	32	12	1.83
51883632--51883820	40	4.7	40	92	2	308	25	22	26	24	2.00
51883632--51883853	80	2.8	80	87	6	308	27	22	26	24	2.00
51893124--51893268	40	3.6	40	85	4	193	25	24	26	23	2.00
51900567--51900711	40	3.6	40	85	4	193	25	24	26	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186