genome.fa.s20.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  173  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57568329--57568504	47	3.8	48	75	15	172	27	20	29	22	1.99
57568331--57568504	94	1.9	94	86	4	253	27	20	29	22	1.99
57572851--57573943	50	21.9	50	96	2	1966	36	6	24	33	1.80
57574097--57574203	37	2.9	37	94	0	178	24	18	30	26	1.98
57579457--57579700	55	4.6	54	77	9	218	21	24	17	36	1.95
57587093--57587272	55	3.3	54	76	9	163	25	22	17	33	1.96
57590592--57590811	46	4.8	44	77	14	175	28	19	29	23	1.98
57591024--57591074	26	2.0	26	100	0	102	35	0	21	43	1.53
57593357--57593591	128	1.8	128	93	0	407	35	16	13	34	1.88
57598359--57598627	47	5.8	45	75	7	182	27	19	29	23	1.98
57598361--57598627	93	2.9	88	79	10	234	27	19	29	23	1.98
57598364--57598626	140	1.9	140	81	4	325	27	19	29	23	1.98
57600751--57600787	18	2.1	18	90	5	58	43	2	16	37	1.62
57601807--57601931	50	2.5	51	90	3	191	33	17	22	26	1.96
57601909--57602079	31	5.5	31	90	0	261	29	18	26	25	1.98
57602110--57602235	47	2.7	48	85	2	166	30	15	24	30	1.95
57609361--57609993	93	6.8	93	86	1	831	29	18	27	24	1.98
57609361--57609996	186	3.4	186	91	1	945	29	18	27	24	1.98
57619396--57619533	40	3.5	40	91	3	217	25	23	27	23	2.00
57628319--57628365	20	2.4	20	80	13	53	72	0	6	21	1.07
57628319--57628378	16	3.7	16	72	12	50	75	0	5	20	0.99
57628335--57628387	17	3.1	17	78	10	63	73	0	1	24	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57630281--57630364	42	2.0	42	97	0	159	41	21	2	34	1.66
57630524--57630773	89	2.8	88	91	1	401	26	28	21	24	1.99
57630524--57630768	44	5.5	44	84	6	325	26	28	21	24	1.99
57638532--57638601	34	2.1	34	100	0	140	30	17	25	27	1.97
57640847--57641081	116	2.0	116	98	0	452	41	26	5	26	1.76
57641487--57641516	16	1.9	16	93	6	53	50	20	0	30	1.49
57641764--57641812	24	2.0	24	100	0	98	32	8	12	46	1.71
57642654--57642717	25	2.6	25	71	0	65	28	17	23	31	1.97
57642695--57642801	25	4.4	25	73	10	87	31	19	21	27	1.97
57657549--57657843	47	6.2	47	87	2	401	31	8	30	29	1.86
57657552--57657828	96	2.9	96	91	1	432	31	8	31	29	1.87
57663214--57663283	27	2.6	26	95	2	95	31	28	12	27	1.93
57663214--57663311	28	3.5	28	90	2	135	31	28	13	26	1.94
57666334--57666403	25	2.8	25	91	0	104	27	22	22	27	1.99
57666606--57666933	27	12.1	27	88	1	415	24	20	19	35	1.96
57666918--57667052	27	5.0	27	72	3	101	28	10	22	37	1.87
57668371--57668402	16	2.0	16	100	0	64	37	18	6	37	1.76
57669280--57669442	6	26.8	6	75	18	142	48	13	17	20	1.80
57669560--57669633	27	2.8	27	82	10	89	35	20	24	20	1.96
57669584--57669641	27	2.1	27	84	6	73	36	27	20	15	1.93
57669798--57669856	22	2.7	22	81	0	64	32	22	25	20	1.98
57669944--57670026	27	3.1	26	86	5	103	37	20	21	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57670225--57670420	27	7.3	27	85	0	212	25	17	19	37	1.94
57670225--57670420	54	3.6	54	85	2	241	25	17	19	37	1.94
57670425--57670618	27	7.2	27	78	4	221	39	9	22	28	1.85
57670430--57670618	54	3.5	54	85	0	270	39	9	22	28	1.86
57670425--57670624	81	2.5	81	80	4	244	39	9	23	28	1.85
57670430--57670641	54	3.9	53	81	7	241	38	9	22	29	1.86
57679342--57679378	19	1.9	19	94	0	65	10	40	27	21	1.86
57679343--57679387	19	2.4	19	88	0	63	11	42	24	22	1.86
57681428--57681610	79	2.3	80	83	7	230	25	26	22	25	2.00
57681426--57681610	40	4.7	40	80	7	216	25	27	22	24	2.00
57689364--57689388	8	3.1	8	100	0	50	24	12	40	24	1.88
57699136--57699380	49	4.9	49	81	3	292	25	19	27	27	1.99
57715346--57715599	40	6.4	40	90	2	361	22	22	27	27	1.99
57731778--57731945	40	4.2	40	83	4	106	25	27	23	23	2.00
57731801--57731945	40	3.6	40	85	4	193	23	26	24	25	2.00
57738085--57738127	21	2.0	21	95	0	77	23	23	32	20	1.98
57740932--57741186	55	4.8	54	79	11	262	21	25	17	36	1.94
57745718--57745747	15	2.0	15	100	0	60	20	13	13	53	1.72
57749064--57749115	20	2.6	20	76	11	61	48	1	15	34	1.56
57759386--57759455	36	1.9	36	94	0	122	37	8	17	37	1.80
57761946--57762157	46	4.6	46	75	12	177	27	18	30	22	1.98
57764842--57764877	2	18.0	2	88	0	54	47	2	2	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57764845--57764881	18	2.1	18	89	0	56	48	8	2	40	1.47
57765360--57765537	27	6.6	27	82	3	187	26	15	28	29	1.96
57765361--57765511	82	1.9	81	88	4	232	26	15	28	29	1.96
57765357--57765538	82	2.2	81	81	5	224	26	15	28	29	1.96
57780850--57781027	27	6.6	27	83	3	205	26	15	28	29	1.96
57780851--57781006	82	1.9	81	88	3	233	26	15	28	29	1.96
57780847--57781027	82	2.2	81	83	2	229	27	15	27	29	1.96
57782952--57783270	46	6.8	47	78	13	243	26	19	30	22	1.98
57782913--57783126	46	4.6	46	80	9	213	27	20	30	22	1.98
57795183--57795440	40	6.5	40	87	4	319	24	22	27	25	2.00
57801912--57801936	13	1.9	13	100	0	50	24	0	16	60	1.36
57811602--57811693	46	2.0	46	89	0	139	28	25	13	33	1.93
57818921--57818995	38	2.0	36	82	10	89	48	13	6	30	1.68
57822118--57822295	27	6.6	27	83	3	205	26	15	28	29	1.96
57822119--57822274	82	1.9	81	88	3	233	26	15	28	29	1.96
57822115--57822295	82	2.2	81	83	2	229	27	15	27	29	1.96
57823858--57823887	14	2.1	14	93	0	51	23	33	26	16	1.96
57828584--57828615	12	2.8	12	95	4	57	28	9	25	37	1.87
57831429--57831649	46	4.7	46	80	8	207	28	18	29	23	1.97
57831475--57831698	47	4.8	47	78	9	210	29	18	29	23	1.97
57832828--57832866	21	1.9	21	89	5	62	10	35	30	23	1.88
57835518--57835883	48	7.6	48	79	4	371	28	19	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57835505--57835884	96	4.0	96	85	2	469	28	19	27	24	1.99
57836906--57837113	28	7.4	28	96	0	389	17	20	44	17	1.87
57839540--57839905	180	2.0	179	85	4	497	34	18	9	37	1.83
57840474--57840907	50	8.6	50	77	3	404	30	25	17	25	1.98
57840474--57840860	101	3.8	100	75	7	273	29	26	18	25	1.98
57840477--57840861	151	2.5	151	88	0	572	30	26	17	25	1.98
57840473--57840905	151	2.9	150	83	4	557	30	25	17	25	1.97
57846429--57846776	40	8.7	40	89	1	511	24	22	28	25	1.99
57846988--57847096	57	1.9	57	86	1	155	23	18	28	29	1.98
57847277--57847320	22	2.0	22	95	0	79	36	25	9	29	1.86
57851684--57851862	48	3.7	48	80	6	139	26	27	18	26	1.98
57851726--57851863	48	2.9	48	83	2	170	24	27	19	28	1.99
57859359--57859525	90	1.9	90	87	2	246	26	27	17	28	1.98
57859449--57859568	42	2.9	42	87	0	159	30	29	15	25	1.95
57859358--57859604	132	1.9	132	83	1	325	28	27	17	27	1.97
57859532--57859701	48	3.5	48	82	4	175	30	29	14	25	1.95
57866301--57866448	46	3.2	46	71	13	135	29	27	19	24	1.99
57875442--57875495	17	3.1	17	75	5	54	27	0	1	70	0.98
57875443--57875494	24	2.2	24	89	0	77	25	0	1	73	0.94
57876682--57876899	40	5.5	40	80	1	249	30	16	30	22	1.96
57876677--57876899	80	2.8	79	82	1	277	31	16	29	22	1.96
57882390--57882539	27	5.6	27	83	3	158	29	28	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57882390--57882538	81	1.8	81	86	2	219	29	28	15	26	1.96
57890542--57890691	27	5.6	27	82	4	169	28	28	16	27	1.97
57890542--57890690	81	1.8	81	86	2	219	28	28	16	26	1.97
57901189--57901347	43	3.7	43	81	10	191	23	18	26	30	1.98
57913228--57913476	125	2.0	125	96	0	462	35	13	20	31	1.91
57913525--57913645	60	2.0	60	95	0	215	28	15	23	32	1.95
57913626--57913807	40	4.6	40	89	2	269	25	21	26	25	1.99
57922658--57922693	16	2.2	16	95	0	63	44	19	16	19	1.87
57923262--57923485	113	2.0	113	94	0	394	32	15	18	33	1.93
57924309--57924353	24	1.9	23	86	4	63	62	6	13	17	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186