genome.fa.s20.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  154  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51174827--51175085	29	9.0	28	81	5	270	22	25	14	37	1.92
51174827--51175096	58	4.7	58	82	5	305	22	25	14	37	1.93
51174827--51175111	88	3.3	87	83	5	312	23	25	14	37	1.92
51177858--51177890	16	1.9	18	88	11	52	66	0	12	21	1.23
51178373--51178413	18	2.2	18	86	4	55	51	2	14	31	1.56
51178643--51178691	25	2.0	25	83	0	62	38	0	16	44	1.48
51179077--51179162	43	2.0	43	88	0	127	52	1	22	24	1.54
51184919--51185073	78	2.0	78	97	0	292	43	12	18	25	1.85
51189043--51189147	39	2.6	39	86	5	122	24	22	27	24	2.00
51189003--51189147	40	3.7	40	81	12	165	24	23	27	24	2.00
51189004--51189166	40	4.1	39	79	10	100	25	23	28	23	2.00
51189003--51189153	79	1.9	80	82	6	191	25	23	27	23	2.00
51189914--51189971	29	2.0	29	100	0	116	48	0	20	31	1.50
51189917--51189966	17	3.2	17	68	26	56	48	0	22	30	1.51
51196265--51196367	28	3.6	28	81	6	100	20	26	15	37	1.92
51196283--51196367	28	3.0	28	84	6	109	21	28	14	36	1.92
51196352--51196430	29	2.7	29	90	0	122	20	25	12	41	1.87
51197367--51197421	27	2.0	28	82	10	69	38	14	14	32	1.87
51198065--51198697	314	2.0	315	91	0	1018	43	15	24	17	1.87
51208864--51208940	26	3.0	26	73	7	75	41	18	18	22	1.90
51211363--51211569	45	4.6	45	89	2	267	27	27	21	24	1.99
51224121--51224394	40	6.8	40	93	1	431	26	21	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51224121--51224394	82	3.4	80	92	3	440	26	21	28	23	1.99
51225802--51225885	26	3.4	25	85	8	100	27	20	22	29	1.98
51241554--51241738	79	2.3	81	84	7	236	25	27	22	24	2.00
51241554--51241738	40	4.7	40	83	7	234	25	27	22	24	2.00
51243402--51243526	45	2.9	45	82	9	145	23	32	18	25	1.97
51246564--51246698	50	2.7	50	90	0	207	29	31	20	17	1.96
51256048--51256295	40	6.3	40	87	6	330	23	20	27	27	1.99
51255996--51256295	40	7.7	38	79	14	224	23	21	27	27	1.99
51261340--51261431	42	2.2	42	82	2	103	31	22	18	27	1.97
51261364--51261474	42	2.6	42	80	5	118	32	27	17	23	1.96
51264283--51264428	66	2.2	65	90	3	222	25	23	28	22	2.00
51270169--51270268	28	3.5	28	77	8	121	32	27	17	24	1.96
51270203--51270297	29	3.3	29	75	8	95	30	27	16	25	1.97
51270169--51270329	57	2.8	57	88	0	205	30	26	18	24	1.98
51270335--51270530	40	4.9	40	91	1	306	27	27	22	22	1.99
51271315--51271517	69	2.9	69	97	0	379	39	16	21	22	1.92
51271572--51271819	126	2.0	123	94	2	433	34	21	17	26	1.95
51273041--51273225	79	2.3	81	81	7	209	25	27	22	25	2.00
51273022--51273225	40	5.1	40	79	8	211	25	26	22	25	2.00
51281445--51281567	43	2.9	42	78	7	140	26	22	18	32	1.97
51289798--51290021	40	5.7	40	83	6	262	24	22	27	26	2.00
51289805--51290021	79	2.7	79	81	9	255	24	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51289798--51290046	79	3.2	79	78	7	204	25	21	26	26	2.00
51298936--51299119	40	4.7	40	82	11	204	25	27	21	26	2.00
51298936--51299119	79	2.3	82	81	13	208	25	27	21	26	2.00
51316335--51316631	38	7.9	37	77	6	197	18	20	27	34	1.95
51316334--51316630	76	3.9	76	77	4	269	18	20	27	34	1.96
51316334--51316630	114	2.6	114	79	5	343	18	20	27	34	1.96
51319596--51319630	17	2.1	16	89	5	52	42	14	0	42	1.45
51323385--51323503	59	2.0	59	96	0	220	39	18	11	30	1.86
51323532--51323922	192	2.0	192	97	0	746	24	10	21	43	1.83
51324623--51324751	41	3.1	41	86	0	168	34	21	19	24	1.97
51325317--51325365	22	2.3	22	82	13	66	18	0	44	36	1.50
51325522--51325578	7	8.1	7	78	0	51	17	1	33	47	1.58
51325516--51325578	21	3.0	21	73	13	58	19	1	30	49	1.58
51326258--51326329	3	24.7	3	88	5	112	62	0	37	0	0.95
51330725--51330785	22	2.8	21	74	16	61	57	3	0	39	1.15
51330790--51331025	43	5.5	43	74	6	147	27	15	28	28	1.96
51330907--51331036	43	3.0	43	82	2	163	29	16	26	26	1.97
51341369--51341527	40	4.0	40	93	3	259	23	22	27	25	2.00
51348292--51348489	40	5.0	40	78	8	172	23	21	28	26	1.99
51349457--51349596	71	2.0	71	91	2	228	31	16	17	34	1.93
51351459--51351556	40	2.5	40	88	5	137	25	24	27	22	2.00
51355354--51355429	26	2.9	26	82	3	73	34	15	9	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51358193--51358251	2	29.5	2	85	0	82	0	55	0	44	0.99
51362795--51363112	47	6.7	47	73	13	197	23	28	20	27	1.99
51363503--51363559	30	1.9	30	88	0	87	29	19	14	36	1.91
51370318--51370632	94	3.4	94	77	6	300	23	28	19	27	1.98
51371156--51371303	74	2.0	74	100	0	296	36	21	9	32	1.86
51372113--51372168	29	2.0	29	89	3	87	21	21	37	19	1.94
51374227--51374283	23	2.6	23	81	15	75	59	1	0	38	1.08
51379946--51379989	4	11.0	4	100	0	88	50	25	0	25	1.50
51380447--51380488	20	2.1	20	86	8	59	30	9	2	57	1.44
51380452--51380498	20	2.3	20	82	14	60	34	10	4	51	1.56
51384231--51384255	13	1.9	13	100	0	50	44	0	0	56	0.99
51389361--51389468	26	4.2	26	93	0	189	32	7	24	36	1.83
51391089--51391229	54	2.6	53	93	2	228	17	24	23	34	1.96
51391089--51391247	27	5.9	27	82	11	184	18	24	22	34	1.96
51396497--51396815	26	12.3	26	92	0	539	33	8	23	34	1.84
51396497--51396815	52	6.1	52	99	0	620	33	8	23	34	1.84
51398430--51398570	27	5.2	26	83	6	165	17	21	24	36	1.95
51398430--51398556	54	2.4	54	93	0	218	18	23	23	34	1.96
51418736--51418830	48	2.0	48	89	0	145	28	18	23	29	1.98
51426451--51426755	40	7.7	40	90	3	429	24	21	28	25	1.99
51428578--51428762	40	4.7	40	77	10	175	24	21	27	26	1.99
51428625--51428795	79	2.2	79	82	6	195	27	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51429134--51429401	40	6.7	40	85	2	324	25	20	27	26	1.99
51458174--51458263	22	4.1	22	88	2	128	44	16	21	17	1.87
51458174--51458289	44	2.6	44	82	9	135	43	16	22	18	1.88
51465877--51465933	30	1.9	30	100	0	114	17	22	31	28	1.97
51476595--51476620	13	2.0	13	100	0	52	46	15	0	38	1.46
51478977--51479199	40	5.6	39	80	7	207	25	27	21	26	1.99
51479131--51479208	40	1.9	41	82	10	97	26	28	20	24	1.99
51481996--51482165	6	27.7	6	70	13	96	48	11	20	20	1.79
51482024--51482131	19	5.8	19	79	4	121	47	12	22	18	1.81
51482013--51482165	31	4.5	31	73	17	117	48	11	20	19	1.80
51482013--51482143	37	3.5	37	91	0	199	47	11	21	19	1.81
51482669--51482862	27	7.2	27	88	0	253	41	7	22	29	1.80
51482669--51482862	54	3.6	54	89	0	280	41	7	22	29	1.80
51482669--51482862	81	2.4	81	89	0	280	41	7	22	29	1.80
51484856--51484983	6	20.8	6	68	13	55	53	12	14	19	1.73
51484882--51484948	19	3.6	19	73	4	64	53	13	14	17	1.72
51484868--51484948	37	2.2	37	86	0	108	54	13	14	17	1.72
51485120--51485181	27	2.3	28	83	8	83	32	22	24	20	1.98
51485416--51485609	27	7.2	27	86	0	226	43	6	20	29	1.76
51485435--51485609	54	3.2	54	87	0	251	44	6	20	28	1.77
51485416--51485628	81	2.6	81	88	0	291	42	6	20	30	1.76
51485435--51485633	54	3.7	55	82	6	169	43	6	19	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51486692--51486723	15	2.0	17	88	11	50	25	0	31	43	1.55
51488989--51489056	32	2.1	32	86	0	91	29	29	19	22	1.98
51489289--51489319	16	1.9	16	93	0	53	29	12	25	32	1.93
51496103--51496561	48	9.6	48	85	4	491	26	19	29	25	1.99
51500033--51500111	37	2.1	37	90	0	122	25	31	18	24	1.98
51500230--51500640	47	8.7	47	97	0	750	29	30	8	32	1.86
51516577--51516630	25	2.0	28	82	10	69	31	3	22	42	1.71
51516719--51517035	48	6.6	46	78	8	280	27	19	29	23	1.98
51516719--51517035	96	3.3	94	81	7	347	27	19	29	23	1.98
51523555--51523623	30	2.3	30	82	0	84	17	28	27	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186