genome.fa.s20.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  112  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37004926--37004973	20	2.5	20	86	10	64	66	2	6	25	1.26
37004997--37005025	15	1.9	15	100	0	58	41	6	0	51	1.28
37013274--37013340	33	2.0	33	94	0	116	59	5	16	17	1.56
37039723--37039795	30	2.4	29	80	17	78	42	0	4	53	1.20
37041419--37041775	178	2.0	179	97	0	680	38	11	7	42	1.69
37041826--37042019	95	2.0	95	98	2	372	18	16	26	39	1.91
37042598--37042650	21	2.5	21	81	0	70	32	35	7	24	1.84
37043119--37043181	28	2.2	28	91	0	99	31	6	30	31	1.83
37044344--37044379	15	2.4	15	100	0	72	22	22	0	55	1.44
37045499--37045811	156	2.0	156	100	0	626	32	20	14	32	1.93
37048705--37048761	28	2.0	28	89	0	87	35	7	26	31	1.83
37053695--37053730	14	2.6	15	83	16	51	44	0	5	50	1.25
37057078--37057113	18	2.0	18	88	0	54	58	2	0	38	1.13
37060227--37060354	65	2.0	64	92	1	211	26	17	13	42	1.86
37066628--37066712	17	4.9	17	72	16	68	23	2	1	72	1.03
37066628--37066706	24	3.4	23	78	14	74	24	1	1	73	0.98
37066628--37066674	21	2.3	20	86	10	69	21	0	0	78	0.75
37066642--37066707	29	2.5	28	80	11	77	24	1	1	72	1.01
37066630--37066683	20	2.6	21	85	2	74	20	0	1	77	0.86
37072394--37072476	11	7.5	11	75	12	62	2	2	31	63	1.20
37072412--37072468	21	2.7	21	86	5	71	1	1	29	66	1.12
37072415--37072474	32	1.9	30	83	6	75	1	3	28	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37072709--37072757	26	2.0	25	84	8	64	30	0	6	63	1.19
37078358--37078457	6	16.3	6	87	8	85	14	4	9	73	1.23
37078352--37078440	12	7.3	12	88	3	99	14	3	5	76	1.10
37079642--37079669	11	2.5	11	100	0	56	21	39	10	28	1.87
37091143--37091370	41	5.6	41	95	3	390	26	19	24	30	1.98
37091145--37091412	123	2.2	122	87	6	373	27	19	24	28	1.99
37100520--37100593	31	2.4	32	88	4	107	25	14	13	45	1.82
37104132--37104172	20	2.1	20	86	4	57	58	2	0	39	1.11
37105533--37105558	3	8.7	3	100	0	52	69	0	0	30	0.89
37108513--37108538	3	8.7	3	100	0	52	65	34	0	0	0.93
37109536--37109574	7	6.0	6	91	8	51	15	5	0	79	0.90
37109536--37109574	13	2.9	13	92	3	60	15	5	0	79	0.90
37111027--37111058	5	6.2	5	96	3	55	21	0	0	78	0.76
37123898--37123991	40	2.3	41	83	7	113	26	28	17	27	1.97
37131303--37131359	25	2.2	27	84	12	75	61	3	1	33	1.23
37131303--37131360	26	2.2	27	79	14	68	62	3	1	32	1.22
37131313--37131373	17	3.5	17	71	13	52	62	3	1	32	1.21
37131485--37131517	10	3.3	10	88	12	50	42	0	0	57	0.98
37159887--37160058	46	3.7	46	78	14	201	20	19	29	29	1.97
37159880--37160051	93	1.8	93	93	2	301	21	20	29	28	1.98
37167458--37167633	46	3.8	46	79	12	216	20	21	29	28	1.98
37167455--37167626	93	1.8	93	96	0	317	20	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37171440--37171470	11	2.7	11	95	5	53	38	0	16	45	1.47
37172287--37172323	19	2.0	18	89	5	56	21	2	0	75	0.92
37172283--37172336	19	2.8	18	78	13	54	24	1	1	72	1.05
37177487--37177545	23	2.6	23	82	10	68	52	8	1	37	1.42
37177495--37177545	23	2.2	24	86	6	70	52	7	1	37	1.42
37178827--37178866	21	1.9	21	89	0	62	37	5	15	42	1.68
37180697--37180788	44	2.1	44	84	8	116	33	23	20	21	1.97
37181375--37181422	25	1.9	25	91	0	78	45	2	0	52	1.12
37181559--37181603	3	15.3	3	90	4	74	62	0	2	35	1.08
37187247--37187307	22	2.8	22	94	0	104	44	19	9	26	1.82
37187347--37187434	24	3.6	24	92	1	140	31	37	12	18	1.88
37187347--37187455	24	4.6	23	86	6	114	32	36	12	18	1.89
37187352--37187455	48	2.2	46	85	10	138	30	36	13	19	1.90
37187515--37187599	31	2.6	31	82	12	84	25	25	18	29	1.98
37187515--37187602	17	5.4	16	70	17	58	26	25	19	29	1.98
37187539--37187599	31	1.9	32	87	9	90	24	29	18	27	1.98
37187722--37187802	22	3.6	22	83	3	99	30	14	22	32	1.94
37187724--37187821	22	4.4	21	81	8	79	32	16	20	30	1.94
37189942--37190003	32	2.0	31	83	3	79	35	0	3	61	1.12
37195147--37195193	23	2.0	23	100	0	94	27	17	4	51	1.64
37197045--37197104	30	2.0	30	93	0	102	41	18	11	28	1.85
37203094--37203168	27	2.9	25	79	11	80	53	2	1	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37203744--37203823	29	2.8	29	86	0	88	30	12	8	48	1.71
37203776--37203826	15	3.5	15	72	5	50	23	15	11	49	1.78
37203770--37203826	29	2.0	29	96	0	105	28	14	12	45	1.80
37210717--37210770	20	2.7	19	72	8	54	33	0	1	64	1.04
37214656--37214680	12	2.1	12	100	0	50	76	0	24	0	0.80
37217083--37217107	13	1.9	13	100	0	50	16	48	24	12	1.79
37217891--37218522	45	14.1	45	89	1	840	28	27	18	24	1.98
37223619--37223653	13	2.7	13	90	0	52	62	11	11	14	1.54
37223669--37224150	88	5.5	88	99	0	948	32	17	17	32	1.93
37224151--37224244	49	2.0	49	89	4	147	34	20	17	28	1.95
37224198--37225293	72	15.0	72	91	3	1415	32	21	16	29	1.95
37224198--37225964	144	11.6	144	82	10	1476	32	20	17	29	1.96
37224203--37225964	511	3.3	512	82	8	1924	32	20	17	29	1.96
37225306--37225332	14	1.9	14	100	0	54	51	7	18	22	1.70
37225469--37225495	14	1.9	14	100	0	54	51	7	18	22	1.70
37225185--37225942	163	4.6	163	91	2	1180	30	21	18	29	1.97
37225508--37225805	73	3.8	74	70	21	232	31	20	19	28	1.97
37225630--37225656	14	1.9	14	100	0	54	62	7	14	14	1.51
37225795--37225821	14	1.9	14	100	0	54	51	7	18	22	1.70
37225799--37225950	76	2.0	76	85	3	207	28	21	19	30	1.98
37225876--37226135	139	1.9	141	89	3	409	35	20	16	26	1.94
37226107--37226282	71	2.5	70	86	3	221	34	22	14	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37236540--37236590	18	2.8	18	69	0	57	3	0	37	58	1.16
37239645--37239876	49	4.7	49	82	5	245	29	26	17	26	1.98
37239645--37239869	101	2.3	98	82	5	265	30	26	17	26	1.97
37248819--37248881	6	10.7	6	75	16	51	69	3	1	25	1.12
37248842--37248894	22	2.5	21	81	6	61	66	1	3	28	1.20
37251798--37252055	141	1.8	141	87	3	385	29	15	32	22	1.95
37258654--37258807	43	3.6	43	85	1	193	24	22	29	24	1.99
37262544--37262577	18	1.9	18	88	5	52	44	2	2	50	1.32
37262999--37263030	14	2.3	14	94	0	55	53	25	0	21	1.46
37263666--37263773	41	2.6	41	91	5	182	25	28	21	25	1.99
37263843--37263867	12	2.1	12	100	0	50	52	32	8	8	1.60
37272138--37272178	21	2.0	21	85	9	57	26	26	17	29	1.97
37273622--37273689	21	3.5	20	73	18	63	39	0	2	57	1.14
37273940--37273990	24	2.1	24	96	0	93	41	17	3	37	1.68
37293559--37293665	45	2.5	43	87	7	146	61	3	0	33	1.20
37293559--37293651	21	4.3	21	85	9	134	62	3	0	34	1.11
37299862--37299891	15	1.9	16	93	6	53	40	23	0	36	1.55
37300067--37300217	43	3.6	42	84	2	205	30	26	13	29	1.94
37310040--37310108	21	3.4	21	71	15	72	36	1	7	55	1.37
37310095--37310125	15	2.1	14	94	5	53	35	3	6	54	1.42
37316000--37316052	13	4.4	12	78	21	58	22	3	0	73	0.99
37320175--37320252	4	19.5	4	97	0	147	48	24	1	25	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37324678--37324703	2	13.0	2	100	0	52	50	0	50	0	1.00
37326730--37326771	5	8.4	5	89	0	66	35	0	4	59	1.19
37327758--37327879	47	2.6	46	76	6	127	24	18	23	33	1.96
37333320--37333346	5	5.4	5	100	0	54	40	0	0	59	0.98
37334569--37334606	20	1.9	20	84	10	51	42	13	23	21	1.88
37336518--37336553	16	2.2	16	100	0	72	38	16	27	16	1.90
37336472--37336599	62	2.1	62	92	2	213	37	15	25	21	1.93
37336534--37336742	46	4.5	46	90	1	294	39	15	24	20	1.92
37346724--37346786	29	2.2	29	100	0	126	30	0	20	49	1.49
37352714--37352747	17	2.0	17	88	0	50	29	0	8	61	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186