genome.fa.s20.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  141  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46577034--46577206	46	3.7	46	78	10	199	22	20	27	29	1.99
46577031--46577201	93	1.8	93	92	0	288	22	21	28	28	1.99
46584640--46584814	46	3.8	46	78	13	205	22	21	26	29	1.99
46584639--46584809	93	1.8	93	92	0	288	22	21	27	28	1.99
46585039--46585076	19	2.0	20	85	15	53	36	0	23	39	1.55
46589607--46589771	46	3.6	45	87	6	215	30	15	28	25	1.95
46595035--46595190	42	3.7	42	77	0	150	28	25	16	29	1.96
46596077--46596104	5	5.6	5	100	0	56	17	0	0	82	0.68
46601333--46601374	22	2.0	22	95	4	77	38	16	9	35	1.81
46605467--46605550	24	3.3	24	64	23	64	52	4	2	40	1.35
46605486--46605561	19	4.3	19	65	27	58	51	2	1	44	1.23
46605471--46605574	52	2.0	52	98	0	199	49	3	1	45	1.31
46605493--46605591	24	4.0	24	70	15	67	43	4	1	51	1.27
46608557--46608584	13	2.2	13	100	0	56	14	14	17	53	1.73
46615263--46615354	40	2.3	40	98	0	175	29	13	21	35	1.91
46615858--46616175	48	6.6	48	76	11	267	29	19	27	24	1.98
46615858--46616179	96	3.4	95	77	7	312	29	18	27	24	1.98
46615845--46616175	144	2.3	144	89	1	502	28	18	27	25	1.98
46625558--46625587	11	2.7	11	94	0	51	46	0	3	50	1.18
46628202--46628516	94	3.3	95	78	8	300	23	28	19	28	1.98
46628202--46628516	49	6.6	48	75	9	198	23	28	19	28	1.98
46628351--46628516	48	3.5	48	77	6	149	24	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46631781--46631896	45	2.6	45	77	2	126	26	14	25	32	1.95
46631875--46631915	19	2.2	19	100	0	82	9	24	34	31	1.88
46634833--46635065	48	4.9	48	89	3	371	31	27	5	35	1.80
46634825--46635065	95	2.5	97	89	3	382	31	27	5	35	1.80
46645763--46645801	17	2.3	17	100	0	78	28	5	20	46	1.72
46647992--46648090	37	2.7	37	87	0	126	41	3	17	38	1.65
46652003--46652914	39	23.3	39	98	0	1745	23	28	22	25	2.00
46657445--46657485	19	2.2	19	100	0	82	46	4	14	34	1.66
46665863--46665916	27	2.0	27	100	0	108	22	29	25	22	1.99
46675187--46675212	13	2.0	13	100	0	52	38	0	23	38	1.55
46679585--46679625	20	2.0	20	90	0	64	31	0	2	65	1.05
46679617--46679662	20	2.2	20	84	7	56	39	0	6	54	1.26
46680123--46680159	19	1.9	19	88	0	56	35	16	8	40	1.78
46680273--46680297	12	2.1	12	100	0	50	28	24	16	32	1.96
46680605--46680718	38	3.0	38	100	0	228	55	23	5	15	1.61
46684731--46684761	15	2.1	15	100	0	62	67	0	32	0	0.91
46686431--46686478	21	2.3	21	88	0	69	20	25	14	39	1.91
46687387--46687436	25	2.0	25	96	0	91	26	20	22	32	1.98
46689581--46689626	22	2.0	22	83	12	56	56	4	10	28	1.53
46690102--46690150	8	6.1	8	85	0	71	53	2	10	34	1.47
46690102--46690150	16	3.1	16	90	0	80	53	2	10	34	1.47
46693004--46693236	48	4.9	48	80	2	234	27	18	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46693004--46693219	96	2.2	96	86	0	306	27	19	29	23	1.98
46716554--46716655	43	2.4	43	81	3	125	32	19	20	27	1.97
46722818--46722864	21	2.2	21	92	0	76	14	23	40	21	1.90
46726563--46726598	16	2.2	16	95	0	63	22	33	5	38	1.77
46726604--46726685	42	2.0	42	82	0	101	23	20	21	34	1.97
46728150--46728195	20	2.3	20	82	14	60	28	28	17	26	1.98
46728162--46728205	19	2.2	20	84	4	54	34	25	18	22	1.96
46733003--46733198	53	3.6	53	78	3	212	36	17	23	21	1.94
46738781--46738847	29	2.3	29	94	2	118	28	10	26	34	1.90
46753896--46753977	6	13.3	6	69	19	53	48	14	17	19	1.81
46753910--46753979	25	2.8	25	84	0	95	48	14	17	20	1.81
46753938--46754009	31	2.3	32	92	2	119	51	13	13	20	1.76
46754146--46754247	27	3.8	27	83	5	116	36	20	23	19	1.95
46754406--46754471	22	3.0	22	80	8	80	33	22	24	19	1.97
46754683--46755023	170	2.0	170	98	0	664	35	26	10	26	1.90
46755068--46755369	27	11.2	27	83	1	338	25	21	18	34	1.96
46755353--46755442	27	3.3	26	73	13	83	28	7	26	36	1.84
46755406--46755720	27	11.7	28	81	7	226	30	8	21	39	1.83
46755408--46755720	54	5.8	53	83	3	288	30	8	21	39	1.83
46755461--46755720	81	3.2	81	83	5	301	31	8	20	40	1.82
46759000--46759033	16	2.1	16	94	0	59	26	17	44	11	1.83
46761511--46761573	31	2.0	31	84	0	81	34	0	4	60	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46763255--46763367	33	3.4	32	79	7	111	38	11	23	27	1.89
46763360--46763507	31	4.8	31	85	5	183	30	16	25	27	1.97
46763360--46763500	62	2.3	62	88	0	210	31	15	25	27	1.96
46763597--46763661	27	2.4	27	92	0	103	38	13	26	21	1.91
46767697--46767750	27	2.0	27	100	0	108	40	18	14	25	1.89
46768414--46768530	47	2.5	47	97	0	216	31	30	17	20	1.95
46769599--46769756	80	2.0	80	91	0	253	32	16	23	27	1.96
46782396--46782570	46	3.7	46	78	7	149	26	18	31	24	1.97
46782399--46782619	47	4.7	47	74	12	145	27	17	31	23	1.97
46783772--46783812	22	1.9	22	90	5	66	9	46	26	17	1.79
46785604--46785778	46	3.7	46	78	7	149	26	18	31	24	1.97
46785607--46785827	47	4.7	47	74	12	145	27	17	31	23	1.97
46786980--46787020	22	1.9	22	90	5	66	9	46	26	17	1.79
46788607--46788637	16	1.9	16	93	0	53	35	22	0	41	1.54
46788604--46788643	20	2.0	20	85	0	53	37	22	0	40	1.54
46790834--46790899	34	1.9	34	84	0	87	28	25	22	22	1.99
46799816--46799891	27	2.8	26	72	18	66	36	21	23	18	1.95
46799964--46800022	27	2.2	27	84	0	82	37	20	23	18	1.94
46804311--46804364	20	2.7	20	97	0	99	7	33	40	18	1.78
46805146--46805308	52	3.1	52	78	7	177	31	25	15	27	1.96
46810054--46810084	3	10.3	3	100	0	62	35	0	0	64	0.94
46818507--46818639	69	1.9	69	95	0	239	48	16	8	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46820382--46820455	31	2.4	31	90	0	112	33	4	5	56	1.41
46821370--46821394	8	3.1	8	100	0	50	76	0	0	24	0.80
46821587--46821622	11	3.3	11	84	0	54	41	0	0	58	0.98
46821623--46821686	20	3.4	18	78	18	67	37	1	9	51	1.44
46823986--46824163	27	6.6	27	84	3	205	29	28	15	26	1.96
46824007--46824162	82	1.9	81	88	3	233	29	28	15	26	1.96
46832175--46832352	27	6.6	27	84	3	205	29	28	15	26	1.96
46832196--46832351	82	1.9	81	88	3	233	29	28	15	26	1.96
46834451--46834486	16	2.2	16	95	0	63	33	27	13	25	1.94
46845555--46845601	25	2.0	25	84	12	64	27	0	8	63	1.23
46851429--46851649	48	4.7	46	77	9	180	23	27	20	28	1.99
46851429--46851649	94	2.3	94	83	5	268	23	27	20	28	1.99
46875197--46875374	27	6.6	27	83	3	205	26	15	28	29	1.96
46875198--46875353	82	1.9	81	88	3	233	26	15	28	29	1.96
46875194--46875374	82	2.2	81	83	2	229	27	15	27	29	1.96
46883260--46883437	27	6.6	27	83	3	205	26	15	28	29	1.96
46883261--46883416	82	1.9	81	88	3	233	26	15	28	29	1.96
46883257--46883437	82	2.2	81	83	2	229	27	15	27	29	1.96
46892479--46892553	36	2.1	36	85	12	100	25	8	22	44	1.80
46892911--46892954	18	2.4	18	80	0	61	20	25	38	15	1.92
46898969--46899140	56	3.1	56	98	0	326	46	8	21	23	1.79
46900689--46900718	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46901197--46901406	28	7.5	28	97	0	386	25	11	29	33	1.91
46909359--46909581	39	5.7	40	86	7	273	25	22	27	24	2.00
46909359--46909581	79	2.8	81	85	8	282	25	22	27	24	2.00
46909359--46909614	79	3.3	79	82	9	224	26	21	27	24	1.99
46912758--46912783	9	2.9	9	100	0	52	11	0	76	11	1.01
46913330--46913371	22	2.0	22	90	4	68	16	26	45	11	1.82
46924512--46924645	46	2.9	45	76	9	128	20	29	23	27	1.99
46928775--46928832	26	2.2	26	81	9	64	27	15	24	32	1.95
46930766--46930982	46	4.6	46	76	8	163	21	30	20	26	1.98
46937576--46937753	46	3.8	44	82	10	180	23	31	17	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186