genome.fa.s20.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  109  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36029596--36029697	20	5.0	20	78	10	82	34	6	10	48	1.65
36029597--36029697	40	2.5	41	79	9	109	33	6	10	48	1.65
36041294--36041326	16	2.1	16	94	0	57	21	6	30	42	1.77
36047432--36047637	46	4.4	47	79	8	194	28	18	30	23	1.98
36047432--36047839	47	8.7	47	72	17	196	26	17	29	25	1.98
36049311--36049367	25	2.3	26	79	14	66	36	28	14	21	1.92
36055251--36055408	43	3.7	42	73	10	115	32	24	18	24	1.97
36055869--36055898	13	2.3	13	100	0	60	23	6	13	56	1.60
36060462--36060523	26	2.4	26	75	0	61	24	25	22	27	2.00
36062094--36062244	43	3.5	43	79	2	169	26	14	25	33	1.94
36063244--36063316	36	2.0	36	97	0	137	16	20	34	28	1.94
36069959--36070209	40	6.3	39	80	7	256	27	28	21	22	1.99
36069978--36070213	120	2.0	120	93	1	402	27	28	21	22	1.99
36078613--36078874	39	6.7	40	88	7	337	24	27	22	25	2.00
36082954--36083092	42	3.2	43	78	9	122	30	17	22	29	1.97
36084410--36084437	13	2.2	13	100	0	56	25	7	42	25	1.80
36086548--36086699	56	2.7	56	87	2	198	37	25	12	24	1.91
36092815--36093002	56	3.4	56	90	0	277	34	25	13	26	1.94
36094047--36094090	17	2.6	17	81	0	52	40	2	2	54	1.25
36094805--36094894	45	2.0	45	93	0	153	24	24	4	46	1.71
36094967--36095000	16	2.1	17	88	5	52	23	20	0	55	1.43
36095039--36095097	30	1.9	31	86	3	84	27	23	3	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36095039--36095107	30	2.3	31	82	7	79	27	21	5	44	1.75
36098758--36098836	27	2.9	27	82	1	77	40	16	22	20	1.91
36100067--36100121	18	3.2	17	76	19	60	60	1	34	3	1.25
36100071--36100127	18	3.2	18	74	13	55	63	1	31	3	1.22
36101140--36101164	13	1.9	13	100	0	50	72	0	0	28	0.86
36106438--36106671	29	8.1	29	75	11	158	25	26	12	35	1.92
36106438--36106671	58	4.1	58	71	11	176	25	26	12	35	1.92
36110664--36110690	13	2.1	13	100	0	54	48	0	7	44	1.31
36134487--36135163	47	14.1	47	86	3	868	31	11	30	26	1.92
36134542--36134641	51	2.2	43	81	15	103	32	12	27	29	1.92
36134487--36135163	145	4.7	141	89	3	870	31	11	30	26	1.92
36134509--36135133	239	2.6	239	92	2	1034	31	11	30	26	1.92
36135137--36135227	46	2.0	46	84	0	119	32	9	31	25	1.89
36135374--36135518	37	3.9	37	89	0	218	24	18	29	27	1.98
36148477--36148643	45	3.9	41	80	9	158	25	28	19	26	1.99
36149429--36149570	47	3.0	47	95	1	250	44	14	12	28	1.82
36156344--36156481	40	3.5	40	90	3	199	23	23	28	24	2.00
36163001--36163084	43	2.0	43	95	2	152	52	0	27	20	1.47
36169494--36169581	45	2.0	45	97	0	167	40	13	23	21	1.89
36169896--36169990	12	7.9	12	65	9	50	21	36	6	35	1.79
36169892--36169995	24	4.3	23	87	8	145	19	37	5	37	1.76
36174493--36174560	29	2.4	28	83	9	84	50	10	5	33	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36177015--36177199	79	2.3	81	83	7	227	24	22	27	25	2.00
36177015--36177199	40	4.7	40	84	6	225	24	22	27	25	2.00
36177068--36177232	79	2.1	79	83	6	201	26	21	26	25	1.99
36191312--36191387	37	2.1	37	83	14	95	43	22	7	26	1.80
36195200--36195321	46	2.6	47	84	5	147	26	22	14	36	1.93
36204487--36204553	34	2.0	34	90	0	107	28	8	19	43	1.81
36210054--36210154	53	1.9	53	85	0	139	34	20	25	18	1.96
36214130--36214271	53	2.6	53	80	2	149	36	18	23	21	1.95
36217071--36217167	48	2.0	48	93	0	167	20	26	13	39	1.90
36226998--36227067	27	2.6	27	81	4	88	37	12	17	32	1.87
36227418--36227496	27	3.0	27	79	1	79	22	21	17	37	1.94
36228950--36229143	24	8.0	24	87	4	273	27	22	21	29	1.99
36229193--36229259	20	3.3	20	93	0	116	32	20	11	34	1.90
36229193--36229248	11	5.5	11	71	16	57	32	19	12	35	1.89
36229604--36229644	17	2.4	17	95	0	73	19	34	31	14	1.92
36230470--36230705	27	8.7	27	78	5	163	31	9	19	40	1.83
36230582--36230738	54	2.9	54	80	3	165	29	10	19	40	1.85
36230737--36230934	27	7.3	27	87	2	254	38	8	24	28	1.84
36230737--36230934	81	2.4	81	90	1	308	38	8	24	28	1.84
36244683--36244937	39	6.5	39	90	1	368	31	28	20	19	1.97
36252321--36252539	45	4.9	45	91	2	311	25	28	22	22	1.99
36255027--36255101	37	2.0	37	94	0	132	20	14	20	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36255031--36255093	20	3.3	20	69	13	69	20	15	15	47	1.82
36255042--36255101	17	3.4	17	73	13	57	20	16	18	45	1.86
36259252--36259280	10	2.9	10	100	0	58	10	41	10	37	1.73
36262665--36262828	46	3.5	46	73	15	140	21	17	29	31	1.96
36266207--36266282	39	2.0	38	94	0	125	17	18	25	38	1.92
36271596--36271639	6	7.3	6	85	10	63	81	0	2	15	0.78
36271585--36271639	18	3.1	17	82	10	65	80	0	5	14	0.89
36274004--36274228	40	5.6	40	79	3	238	24	23	27	24	2.00
36274004--36274264	80	3.3	80	81	3	294	25	23	26	24	2.00
36274004--36274228	120	1.9	121	84	2	310	24	23	27	24	2.00
36275039--36275142	50	2.1	49	94	3	190	41	9	14	34	1.78
36280940--36280980	15	2.6	16	82	14	50	85	4	9	0	0.73
36280889--36281048	80	2.0	80	100	0	320	48	13	20	17	1.80
36282212--36282280	35	2.0	35	97	0	129	23	0	30	46	1.53
36282351--36282575	40	5.6	40	82	4	265	26	24	26	23	2.00
36282351--36282611	80	3.3	80	81	4	287	26	23	25	24	2.00
36282351--36282611	120	2.2	120	81	7	300	26	23	25	24	2.00
36297007--36297041	16	2.1	17	89	5	54	8	0	14	77	0.99
36298349--36298389	21	2.0	21	85	0	55	48	29	9	12	1.72
36303459--36303636	27	6.6	27	84	3	205	29	28	15	26	1.96
36303480--36303635	82	1.9	81	88	3	233	29	28	15	26	1.96
36311522--36311699	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36311543--36311698	82	1.9	81	88	3	233	29	28	15	26	1.96
36317382--36317457	22	3.5	22	78	1	82	14	31	25	28	1.95
36319601--36319645	18	2.4	18	88	3	63	37	4	35	22	1.74
36319614--36319653	18	2.2	18	86	0	53	32	7	32	27	1.85
36320103--36320139	17	2.2	17	95	0	65	24	18	8	48	1.75
36325919--36326184	28	9.5	28	93	1	392	25	13	28	32	1.94
36340126--36340251	63	2.0	63	100	0	252	26	9	17	46	1.79
36342483--36342534	25	2.1	25	92	3	88	26	19	21	32	1.97
36342490--36342559	25	2.8	25	88	0	95	24	22	25	27	2.00
36343443--36343524	27	2.9	28	80	10	96	36	7	14	41	1.74
36343526--36343629	27	3.9	27	80	6	104	27	10	22	39	1.87
36343501--36343625	54	2.3	54	83	0	142	28	8	22	41	1.82
36343530--36343644	27	4.3	27	77	8	92	26	11	22	40	1.87
36343645--36343731	27	3.3	26	84	7	86	41	10	20	27	1.85
36343657--36343748	27	3.4	27	90	0	130	41	9	22	26	1.85
36345963--36346259	40	7.5	40	92	2	458	22	23	28	25	1.99
36349737--36349813	25	3.1	25	83	1	75	24	19	23	32	1.97
36349744--36349803	25	2.4	25	88	0	84	26	21	28	23	1.99
36350694--36350827	27	4.9	27	75	12	85	32	6	17	43	1.75
36350757--36350879	26	4.6	27	73	13	85	29	7	19	43	1.78
36350778--36350912	27	5.1	26	74	10	78	30	11	19	39	1.86
36350759--36350912	80	1.9	80	84	7	206	29	9	18	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36350911--36351002	27	3.4	27	89	0	130	41	7	22	28	1.81
36350769--36350948	80	2.2	80	76	7	186	30	10	20	38	1.85
36353781--36353897	46	2.5	46	90	0	180	30	19	26	23	1.98
36353775--36353907	46	2.9	45	85	4	176	30	19	27	22	1.98
36354731--36354770	21	2.0	20	85	5	53	12	35	25	27	1.92
36360344--36360658	49	6.6	49	87	5	439	32	7	29	29	1.85
36360777--36360855	37	2.1	37	92	0	131	25	18	30	25	1.98
36362665--36362689	13	1.9	13	100	0	50	16	24	40	20	1.91
36376509--36376553	24	1.9	23	86	13	65	33	8	24	33	1.86
36380704--36380736	11	3.0	11	95	0	57	39	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186