genome.fa.s20.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  132  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43527579--43527834	39	6.6	39	85	1	327	30	26	20	22	1.98
43534212--43534259	6	7.8	6	82	13	62	47	14	20	16	1.82
43534377--43534449	27	2.8	26	85	4	101	38	20	23	17	1.93
43535192--43535676	27	18.0	27	84	0	547	25	19	18	37	1.94
43535722--43535927	27	7.6	27	84	1	225	31	8	19	40	1.82
43535952--43536256	27	11.3	27	86	2	380	25	19	16	38	1.92
43536357--43536534	54	3.3	53	88	1	230	30	8	20	39	1.83
43536309--43536534	27	8.4	27	83	1	195	30	9	20	39	1.84
43536385--43536534	80	1.9	80	87	2	221	29	8	21	40	1.83
43536341--43536550	80	2.6	79	79	6	208	31	9	20	39	1.83
43538529--43538595	6	10.8	6	75	12	64	49	14	17	17	1.80
43538529--43538595	25	2.7	25	88	0	98	49	14	17	17	1.80
43540467--43540638	67	2.6	66	81	7	170	31	16	29	22	1.96
43540491--43540674	67	2.8	64	78	8	203	28	16	30	23	1.96
43546501--43546565	32	2.0	32	90	0	103	23	23	16	36	1.94
43546760--43546807	25	2.0	24	84	12	62	25	22	20	31	1.98
43546857--43546932	11	7.5	11	74	16	83	32	18	11	36	1.87
43546857--43546933	20	3.8	20	94	0	136	33	18	11	36	1.87
43550938--43550971	17	2.0	17	94	0	59	29	26	17	26	1.98
43552388--43552416	13	2.3	13	94	5	51	0	13	0	86	0.58
43554864--43554983	28	4.2	29	80	6	122	26	13	30	29	1.94
43554864--43554974	56	2.0	57	83	5	145	26	14	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43566815--43566851	16	2.3	16	95	0	65	21	8	5	64	1.40
43570016--43570299	40	7.1	40	82	7	328	26	27	21	25	1.99
43573333--43573364	16	2.0	16	93	0	55	46	18	21	12	1.82
43573571--43573686	28	4.1	28	87	2	126	25	13	33	26	1.94
43573571--43573686	57	2.1	56	82	8	137	25	13	33	26	1.94
43575890--43575945	28	2.0	28	100	0	112	39	14	17	28	1.89
43578756--43578905	67	2.2	67	82	8	171	33	17	27	22	1.96
43584409--43584528	28	4.2	28	79	4	116	25	12	32	30	1.92
43584409--43584528	57	2.1	56	83	4	143	25	12	32	30	1.92
43588906--43589089	27	6.9	27	82	1	208	26	13	17	42	1.86
43588906--43589088	80	2.3	81	84	0	233	26	13	17	42	1.86
43594316--43594512	55	3.7	53	77	4	144	37	18	24	20	1.94
43594313--43594519	53	3.8	54	76	5	195	37	17	24	20	1.94
43597156--43597205	24	2.1	24	96	0	91	30	22	14	34	1.93
43597498--43597612	28	4.1	29	85	4	139	26	21	15	36	1.93
43598379--43598413	18	2.0	18	88	5	54	28	14	20	37	1.91
43603512--43603588	29	2.7	29	83	0	100	31	27	15	25	1.96
43603815--43603845	16	1.9	16	93	0	53	9	22	22	45	1.81
43606042--43606218	77	2.3	77	92	0	284	31	28	19	20	1.97
43606195--43606247	27	2.0	27	96	0	97	28	33	24	13	1.93
43606574--43606638	30	2.2	29	81	8	76	30	27	6	35	1.81
43606581--43606638	30	1.9	30	85	0	80	31	24	6	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43607560--43607703	37	3.9	37	95	0	234	27	31	18	22	1.97
43607852--43608082	48	4.8	48	98	0	444	31	26	6	35	1.82
43608052--43608245	47	4.1	47	91	0	298	26	29	10	32	1.90
43608145--43608216	22	3.1	22	64	24	58	23	29	13	33	1.93
43607909--43608245	94	3.6	94	87	5	305	28	28	8	33	1.87
43613463--43613527	29	2.3	28	81	2	76	56	3	6	33	1.39
43625183--43625252	31	2.3	31	90	2	106	30	25	15	28	1.96
43625464--43625516	25	2.2	25	93	3	90	26	18	20	33	1.96
43625583--43625619	10	3.7	10	92	7	58	32	18	10	37	1.86
43625563--43625613	21	2.4	21	86	0	66	31	17	13	37	1.89
43633913--43634177	40	6.7	40	90	4	378	25	27	22	25	2.00
43638298--43638386	45	2.0	45	93	0	151	33	24	16	24	1.96
43638397--43638532	50	2.7	52	83	5	179	30	27	16	25	1.96
43643389--43643650	39	6.7	40	88	7	337	24	27	22	25	2.00
43645759--43645836	31	2.5	31	89	2	113	28	25	17	28	1.98
43646048--43646100	25	2.2	25	93	3	90	26	18	20	33	1.96
43646147--43646197	21	2.4	21	90	0	75	31	19	11	37	1.88
43646133--43646197	11	6.1	11	75	5	62	32	16	13	36	1.89
43650829--43650996	46	3.6	45	80	12	189	28	29	20	21	1.98
43654343--43654414	26	2.8	26	93	0	117	26	20	25	27	1.99
43656967--43657108	44	3.3	43	77	14	150	26	19	23	30	1.98
43658307--43658371	15	4.4	15	72	16	55	63	13	13	9	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43661390--43661618	49	4.7	49	85	5	284	29	26	18	26	1.98
43669484--43669641	43	3.7	42	76	16	128	24	19	24	31	1.98
43669521--43669641	43	2.8	43	80	9	131	24	19	24	31	1.98
43674503--43674615	55	2.1	55	87	0	163	13	28	23	35	1.92
43682089--43682210	43	2.9	42	80	7	156	31	15	23	28	1.95
43683693--43683723	13	2.4	13	94	0	53	9	25	32	32	1.88
43690289--43690401	27	4.2	27	87	3	140	34	21	23	20	1.97
43690289--43690402	55	2.1	55	83	6	153	35	21	23	20	1.96
43693265--43693396	40	3.3	40	80	3	142	25	28	21	25	1.99
43701329--43701459	65	2.0	65	96	0	244	36	16	16	29	1.92
43701523--43701653	40	3.3	40	86	3	140	26	29	19	24	1.99
43701551--43701707	79	2.0	80	83	6	203	24	28	22	24	2.00
43701551--43701707	40	4.0	40	81	9	169	24	28	22	24	2.00
43707673--43707717	12	3.7	12	84	3	63	31	0	44	24	1.54
43718378--43718442	19	3.3	19	72	16	69	43	46	0	10	1.38
43718393--43718454	19	3.1	20	69	17	65	37	51	0	11	1.38
43718397--43718461	21	3.2	20	70	16	62	40	46	0	13	1.44
43718376--43718454	40	2.0	40	100	0	158	40	46	0	12	1.42
43720056--43720108	26	2.0	26	100	0	106	35	18	15	30	1.92
43727870--43727909	21	1.9	21	100	0	80	42	25	2	30	1.68
43731439--43731707	37	7.8	37	73	18	267	49	11	19	19	1.79
43731426--43731707	101	2.8	101	98	0	537	48	12	19	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43732036--43732087	14	3.6	15	72	27	58	55	9	0	34	1.32
43736920--43736973	19	2.8	19	82	2	63	64	0	1	33	1.04
43736921--43736973	20	2.8	18	83	11	61	64	0	1	33	1.05
43736957--43737037	36	2.2	37	82	6	103	59	2	3	34	1.29
43737235--43737260	10	2.6	10	100	0	52	46	0	0	53	1.00
43737243--43737313	27	2.6	26	80	8	70	32	4	1	61	1.23
43737271--43737315	18	2.5	19	82	13	60	26	4	4	64	1.32
43737377--43737420	21	2.1	21	86	0	61	34	0	2	63	1.07
43738586--43738640	28	2.0	28	100	0	110	36	10	12	40	1.79
43738588--43738649	28	2.2	28	91	0	97	38	11	8	41	1.70
43739015--43739039	10	2.5	10	100	0	50	64	0	0	36	0.94
43743074--43743232	38	4.1	37	80	10	117	47	11	9	32	1.71
43743229--43743274	24	2.0	23	82	4	56	50	13	2	34	1.53
43743882--43743947	24	2.7	23	77	15	62	6	22	0	71	1.08
43748238--43748307	35	2.0	35	100	0	140	40	31	2	25	1.70
43748893--43749009	35	3.3	35	82	1	135	41	29	12	16	1.85
43751974--43752019	20	2.2	20	88	3	65	17	2	39	41	1.62
43752068--43752222	78	2.0	78	93	2	267	43	7	17	30	1.77
43753886--43753998	27	4.2	26	84	8	127	38	23	22	16	1.93
43753886--43753998	55	2.1	54	85	5	147	38	23	22	16	1.93
43760823--43760935	27	4.2	26	82	8	127	36	23	23	16	1.94
43760823--43760935	55	2.1	54	86	5	156	36	23	23	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43763662--43763719	30	1.9	30	89	0	89	32	12	25	29	1.92
43764060--43764421	47	7.7	45	74	10	291	27	21	29	21	1.98
43764062--43764422	94	3.9	93	78	9	385	28	20	29	21	1.98
43764060--43764422	141	2.6	140	78	9	364	28	21	29	21	1.98
43767038--43767401	47	7.6	47	89	3	566	33	9	29	27	1.88
43767038--43767401	96	3.8	96	98	0	687	33	9	29	27	1.88
43767381--43767422	21	2.0	21	100	0	84	33	4	28	33	1.78
43767334--43767468	68	2.0	68	94	0	234	34	7	28	29	1.84
43767291--43767510	115	1.9	115	96	0	404	33	8	28	29	1.86
43767402--43767561	47	3.4	47	88	0	230	33	8	30	28	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186