genome.fa.s20.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  98  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32094988--32095073	38	2.3	38	93	0	145	18	29	19	32	1.96
32094987--32095102	38	3.1	38	85	0	133	22	25	18	33	1.97
32096432--32096606	43	4.1	42	75	7	156	24	16	25	34	1.95
32096431--32096542	44	2.6	44	82	10	133	24	16	24	35	1.94
32100088--32100114	13	2.1	13	100	0	54	14	37	33	14	1.88
32104544--32104582	20	2.0	20	94	0	69	30	25	2	41	1.69
32111353--32111516	42	3.9	42	78	4	161	29	15	26	28	1.96
32113467--32113523	6	10.0	5	82	17	51	75	7	0	17	1.02
32113467--32113522	12	4.8	11	81	12	67	76	7	0	16	0.99
32113467--32113522	18	3.2	17	80	16	69	76	7	0	16	0.99
32115156--32115192	18	2.1	18	90	10	58	78	5	0	16	0.93
32125523--32125701	90	2.0	90	87	2	261	44	12	17	26	1.84
32126579--32126622	22	2.0	22	95	0	79	36	20	4	38	1.73
32128965--32129093	64	2.0	63	92	1	213	33	6	12	47	1.68
32130277--32130308	16	2.0	16	93	0	55	34	3	12	50	1.56
32143581--32143867	56	5.2	56	94	0	470	32	14	19	33	1.92
32150045--32150074	12	2.4	13	94	5	53	6	6	0	86	0.70
32171263--32171305	18	2.4	19	76	11	54	16	44	23	16	1.86
32180217--32180254	20	1.9	20	88	0	58	21	26	39	13	1.89
32182356--32182479	27	4.6	27	92	1	194	26	15	29	29	1.96
32188014--32188039	13	2.0	13	100	0	52	15	38	30	15	1.88
32193015--32193054	20	2.0	20	85	9	55	27	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32195229--32195260	15	2.2	15	94	5	57	53	0	0	46	1.00
32195346--32195389	19	2.4	18	85	7	54	40	9	0	50	1.34
32196199--32196238	21	1.9	21	84	0	53	25	32	25	17	1.97
32202780--32202805	13	2.0	13	100	0	52	38	7	38	15	1.76
32208976--32209024	25	2.0	25	95	0	89	30	30	8	30	1.86
32209382--32209406	13	1.9	13	100	0	50	40	12	0	48	1.40
32238000--32238201	72	2.8	72	84	3	248	29	27	18	23	1.98
32241457--32241599	72	2.0	72	98	0	277	31	25	18	23	1.98
32251573--32251602	7	4.1	7	95	4	51	13	13	26	46	1.80
32267057--32267130	36	2.1	36	87	5	105	43	17	17	21	1.88
32268048--32268084	16	2.3	16	95	0	65	51	8	5	35	1.55
32275940--32275984	20	2.2	20	84	7	56	48	2	13	35	1.54
32278008--32278140	66	2.0	66	89	2	205	26	12	24	36	1.90
32281800--32282127	164	2.0	164	100	0	656	28	12	26	32	1.93
32284256--32284280	13	1.9	13	100	0	50	36	16	0	48	1.46
32285499--32285593	4	23.8	4	84	0	118	5	22	46	26	1.73
32285495--32285610	16	7.4	16	84	1	128	4	18	46	30	1.69
32286462--32286486	12	2.1	12	100	0	50	32	0	0	68	0.90
32290330--32290361	13	2.5	13	94	0	55	68	3	6	21	1.26
32290475--32290520	23	1.9	25	91	8	78	45	8	0	45	1.34
32293435--32293463	15	1.9	15	100	0	58	20	6	34	37	1.80
32294256--32294699	43	10.3	43	72	9	255	30	27	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32294516--32294695	87	2.1	86	80	8	195	28	31	20	19	1.97
32295027--32295083	21	2.7	21	88	0	78	3	50	17	28	1.62
32300657--32300789	9	14.6	9	68	14	76	31	2	21	45	1.64
32305035--32305103	15	4.6	15	82	7	68	13	17	13	56	1.67
32305028--32305111	30	2.9	29	82	7	89	10	15	16	57	1.65
32313050--32313124	11	7.5	10	77	14	75	36	9	18	36	1.83
32313079--32313115	9	3.9	9	86	13	56	35	2	21	40	1.68
32313068--32313124	20	2.8	20	94	0	105	36	8	19	35	1.83
32313172--32313256	25	3.4	25	91	0	134	29	23	20	27	1.99
32313462--32313536	31	2.4	31	86	4	98	26	18	26	28	1.98
32315826--32315927	27	3.8	27	88	0	141	35	19	19	25	1.95
32316053--32316144	27	3.5	26	72	15	71	19	21	21	36	1.95
32316275--32316325	27	1.9	26	88	4	75	25	21	23	29	1.99
32316306--32316400	33	2.9	33	85	3	129	29	21	25	24	1.99
32322542--32322764	79	2.8	78	82	9	265	24	27	22	25	2.00
32322542--32322764	39	5.7	40	86	8	266	24	27	22	25	2.00
32330569--32330754	80	2.3	80	83	9	220	27	27	20	23	1.99
32330571--32330754	40	4.6	40	83	7	196	27	27	21	23	1.99
32334800--32334860	30	2.1	29	90	3	95	24	16	22	36	1.94
32348347--32348516	30	5.7	30	74	6	85	26	24	10	38	1.88
32348419--32348618	60	3.4	58	78	7	213	20	26	12	41	1.87
32348444--32348609	30	5.6	30	82	7	194	17	28	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32348389--32348579	89	2.1	90	90	0	294	20	26	10	41	1.85
32348449--32348648	60	3.4	59	79	5	224	19	26	14	40	1.90
32350689--32350778	45	2.0	45	100	0	180	31	15	15	37	1.89
32356583--32356671	28	3.1	29	83	3	110	28	28	13	30	1.94
32356885--32356927	8	5.4	8	80	0	50	6	20	18	53	1.67
32366837--32366916	27	3.0	27	90	0	115	16	30	20	33	1.94
32366841--32366933	27	3.4	27	84	1	105	16	25	22	35	1.94
32369106--32369253	77	1.9	78	87	1	217	21	20	28	29	1.98
32369106--32369257	39	3.9	39	88	1	216	22	20	28	28	1.98
32376909--32377057	39	3.8	39	89	0	208	24	20	26	27	1.99
32379833--32379883	26	2.0	26	88	0	75	43	19	17	19	1.89
32387833--32388214	48	8.0	48	78	10	345	25	17	30	26	1.97
32389755--32389939	79	2.3	82	83	7	229	25	27	23	24	2.00
32389736--32389939	40	5.1	40	82	8	229	25	26	23	25	2.00
32398811--32399030	48	4.6	48	76	2	228	28	17	29	24	1.97
32398811--32399073	96	2.8	96	82	2	289	28	16	29	26	1.97
32399004--32399106	48	2.2	47	85	1	134	25	14	29	31	1.95
32398898--32399073	95	1.8	96	87	1	264	27	15	30	26	1.96
32398795--32399123	143	2.3	144	80	1	365	25	16	30	27	1.97
32401749--32401782	17	1.9	18	88	5	52	52	8	5	32	1.56
32422998--32423025	14	2.0	14	100	0	56	21	35	0	42	1.53
32424968--32425021	20	2.7	20	97	0	99	12	31	37	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32427235--32427276	20	2.1	20	100	0	84	59	21	0	19	1.38
32429227--32429263	12	2.9	14	88	11	53	35	2	13	48	1.57
32439744--32439804	30	2.0	30	84	6	79	29	24	8	37	1.84
32448029--32448099	35	2.0	35	97	0	133	45	22	9	22	1.82
32448290--32448434	27	5.4	26	76	11	96	35	17	24	22	1.95
32448311--32448445	54	2.5	54	87	2	191	35	20	23	20	1.96
32448554--32448616	26	2.3	26	83	5	72	30	14	25	30	1.95
32449457--32449576	60	2.0	60	96	0	222	22	25	14	37	1.92
32450138--32450191	26	2.1	26	96	0	99	37	24	7	31	1.83
32451578--32451761	40	4.6	40	82	4	183	26	27	21	25	1.99
32451693--32451770	40	1.9	41	82	10	97	26	28	21	23	1.99
32453253--32453305	26	2.0	26	92	0	88	35	22	7	33	1.83
32459505--32459662	27	5.9	27	79	11	164	34	22	23	19	1.96
32459523--32459662	54	2.6	54	90	2	219	35	23	22	18	1.96
32461285--32461340	26	2.2	26	96	0	103	35	25	7	32	1.83
32467522--32467626	27	3.9	26	82	9	90	36	20	22	20	1.95
32469227--32470062	52	16.1	52	99	0	1654	34	23	7	34	1.83
32471539--32471601	25	2.5	25	78	0	72	28	17	23	30	1.97
32471574--32471630	29	2.0	29	82	6	71	31	19	19	29	1.96
32471546--32471645	25	3.8	25	71	14	76	30	22	20	28	1.98
32471603--32471656	25	2.2	25	83	6	65	31	24	18	25	1.97
32471549--32471655	54	2.0	54	84	0	142	31	20	19	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32472776--32472814	20	2.0	20	85	10	53	15	5	28	51	1.64
32473962--32474003	18	2.3	18	83	0	57	40	16	7	35	1.76
32475306--32475387	42	1.9	42	87	2	119	32	26	17	23	1.96
32475273--32475439	44	3.9	43	75	12	146	31	26	16	25	1.97
32491841--32492061	40	5.5	40	89	5	315	27	27	22	23	1.99
32499799--32499983	79	2.3	82	85	9	249	24	26	22	25	2.00
32499799--32499983	40	4.7	40	79	12	211	24	26	22	25	2.00
32503248--32503330	42	2.0	42	97	0	157	32	10	26	30	1.90
32507958--32508175	47	4.6	47	87	3	301	32	7	30	29	1.86
32507958--32508175	96	2.3	96	90	1	332	32	7	30	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186