genome.fa.s20.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  149  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49262163--49262206	22	2.0	22	86	0	61	52	6	2	38	1.41
49265939--49265963	9	2.8	9	100	0	50	12	0	0	88	0.53
49268936--49268972	16	2.3	16	95	0	65	59	0	2	37	1.12
49269381--49269473	17	5.4	18	65	15	54	27	2	2	67	1.13
49269409--49269460	9	5.9	9	84	2	70	30	1	1	65	1.14
49269410--49269483	18	4.3	18	76	11	75	25	1	4	68	1.15
49269409--49269483	24	3.0	24	78	7	80	26	1	4	68	1.16
49274057--49274090	15	2.2	16	89	5	52	44	11	2	41	1.56
49274458--49274579	61	2.0	61	95	0	217	40	26	7	26	1.82
49277017--49277148	46	2.8	47	83	3	169	31	23	21	22	1.98
49281997--49282074	29	2.7	28	84	11	104	25	14	30	29	1.94
49282027--49282354	174	1.9	174	96	0	602	30	14	24	31	1.94
49298825--49298853	11	2.7	11	94	5	51	82	0	0	17	0.66
49306446--49306623	35	5.1	35	79	5	180	28	14	22	35	1.93
49316100--49316208	26	4.2	26	91	0	182	33	7	22	35	1.82
49317830--49317970	27	5.2	26	85	6	183	17	23	24	35	1.95
49317830--49317970	54	2.6	53	93	2	228	17	23	24	35	1.95
49320531--49320707	35	5.1	35	86	2	230	29	14	21	34	1.93
49325248--49325381	44	3.0	45	81	4	144	34	14	24	26	1.94
49329394--49329460	34	1.9	35	84	3	91	32	10	11	44	1.75
49329409--49329448	20	2.0	20	85	0	53	30	12	10	47	1.74
49337161--49337188	13	2.2	13	100	0	56	21	0	32	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49338614--49338653	22	1.9	19	85	14	53	60	0	0	40	0.97
49347884--49347965	43	1.9	42	87	2	119	30	4	26	37	1.77
49348142--49348172	16	1.9	16	100	0	62	19	3	25	51	1.62
49348179--49348260	18	4.6	18	81	6	103	23	4	13	58	1.54
49348179--49348260	6	13.7	6	86	0	83	23	4	13	58	1.54
49348527--49348658	62	2.2	61	93	2	221	23	8	21	46	1.78
49348762--49348806	15	3.0	15	86	0	63	17	6	33	42	1.76
49351286--49351356	21	3.5	20	67	19	58	35	40	12	11	1.79
49357124--49357243	21	5.7	21	82	0	132	49	19	19	12	1.79
49357137--49357243	42	2.5	42	90	0	160	48	18	19	13	1.80
49361503--49361561	29	2.0	30	86	3	84	37	1	8	52	1.42
49362342--49362375	16	2.1	16	89	10	52	58	0	8	32	1.29
49362793--49362844	18	2.8	19	76	5	61	34	7	7	50	1.60
49362870--49362933	18	3.6	18	78	0	74	34	12	15	37	1.85
49362867--49362949	36	2.3	36	85	0	103	38	9	13	38	1.77
49368115--49368185	21	3.4	21	79	11	83	46	15	21	16	1.84
49368116--49368206	42	2.2	42	80	7	105	46	17	18	17	1.85
49370342--49370366	13	1.9	13	100	0	50	44	16	0	40	1.47
49370310--49370411	46	2.2	46	91	0	159	45	14	7	32	1.74
49372143--49372216	28	2.6	28	91	4	114	28	14	25	31	1.95
49382963--49383022	31	2.0	32	87	9	90	26	8	6	58	1.52
49383003--49383085	30	2.8	31	84	12	95	21	16	7	54	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49388420--49388597	59	3.0	61	81	5	229	19	20	20	40	1.92
49388608--49388673	30	2.2	31	86	2	89	33	18	22	25	1.97
49392478--49392502	3	8.3	3	100	0	50	36	32	0	32	1.58
49396928--49396999	34	2.2	33	82	7	92	20	6	1	70	1.18
49401092--49401139	18	2.9	18	77	22	61	56	0	4	39	1.19
49402372--49402417	3	16.3	3	78	13	53	63	0	36	0	0.95
49402372--49402410	8	4.8	8	81	6	51	66	0	33	0	0.92
49402373--49402416	22	2.0	22	86	0	61	65	0	34	0	0.93
49402445--49402489	22	2.2	20	84	11	56	71	0	28	0	0.87
49403129--49403224	50	2.0	50	83	4	124	56	5	3	35	1.38
49403032--49404166	149	7.6	149	89	2	1588	58	8	5	27	1.51
49403032--49404166	447	2.5	447	89	3	1750	58	8	5	27	1.51
49410608--49410682	16	4.5	16	72	19	64	66	13	0	20	1.24
49410617--49410641	13	1.9	13	100	0	50	64	12	0	24	1.27
49410535--49410637	39	2.6	39	76	11	120	50	14	3	31	1.61
49416924--49416988	31	2.1	31	100	0	130	52	9	10	27	1.67
49421373--49421404	5	6.8	5	92	7	50	84	0	0	15	0.63
49427923--49428028	11	9.2	11	70	26	60	23	3	1	70	1.13
49427954--49428029	4	18.8	4	76	12	59	21	3	1	73	1.06
49427995--49428029	9	3.9	9	89	10	54	20	0	0	80	0.72
49427922--49428031	19	5.7	19	70	16	66	22	3	1	71	1.11
49427995--49428030	5	7.8	5	87	12	51	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49431530--49431641	43	2.6	43	92	0	179	30	29	25	14	1.95
49431634--49431741	38	2.8	38	84	5	137	27	26	22	23	1.99
49438286--49438410	62	2.0	63	87	1	180	36	18	20	24	1.95
49438798--49439661	44	18.9	44	70	14	335	32	17	20	29	1.95
49438747--49439023	94	2.9	94	80	1	286	31	19	22	27	1.97
49439119--49439386	51	5.7	50	71	16	168	32	14	20	32	1.93
49438985--49439607	181	3.4	182	81	5	614	32	16	20	30	1.95
49439258--49439379	45	2.5	50	82	10	139	32	15	19	31	1.93
49438983--49439607	89	6.9	88	72	11	411	32	16	20	29	1.95
49439353--49439696	44	7.7	44	76	9	221	31	17	20	29	1.96
49441069--49441100	3	10.7	3	100	0	64	65	0	0	34	0.93
49441203--49441253	3	16.7	3	91	4	75	31	3	1	62	1.24
49441237--49441306	23	3.0	22	76	12	61	20	5	0	74	1.02
49441417--49441460	21	2.1	21	86	0	61	25	0	11	63	1.27
49441420--49441457	18	2.1	18	90	0	58	26	0	10	63	1.27
49441450--49441475	3	8.7	3	100	0	52	0	0	30	69	0.89
49443149--49443182	17	2.0	17	100	0	68	29	11	23	35	1.90
49446902--49447079	27	6.6	27	82	3	187	26	15	29	28	1.96
49446903--49447058	82	1.9	81	85	3	215	26	15	29	28	1.96
49446899--49447079	82	2.2	81	81	2	211	27	15	28	28	1.96
49452557--49452604	21	2.1	22	81	14	62	52	0	6	41	1.27
49453000--49453038	15	2.7	15	84	4	53	15	17	15	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49454340--49454479	58	2.4	56	82	6	165	27	17	22	33	1.96
49456859--49456891	4	8.5	4	93	6	59	75	0	24	0	0.80
49461140--49461169	13	2.3	13	100	0	60	40	6	6	46	1.56
49465206--49465318	3	37.7	3	73	16	67	24	4	2	68	1.21
49465199--49465271	18	4.0	18	81	13	78	24	4	2	68	1.20
49465353--49465391	14	2.8	14	88	7	53	15	2	7	74	1.15
49465384--49465422	20	2.0	20	89	0	60	12	12	5	69	1.35
49465420--49465462	20	2.1	21	83	8	54	20	2	6	69	1.23
49471368--49471487	57	2.1	58	84	1	161	43	6	20	29	1.77
49475151--49475233	40	2.1	39	91	6	132	26	28	20	24	1.99
49484473--49484539	26	2.4	27	87	9	91	56	14	7	20	1.62
49489085--49489119	10	3.4	10	84	7	52	54	14	11	20	1.70
49490939--49490992	22	2.5	22	90	0	81	31	11	37	20	1.88
49495926--49495969	12	3.7	11	85	14	61	68	4	2	25	1.20
49504592--49504810	46	4.8	46	73	10	146	29	17	27	25	1.97
49510194--49510321	46	2.8	46	85	5	163	29	17	28	24	1.97
49512329--49513481	45	24.8	44	67	16	277	30	20	15	33	1.94
49512275--49512696	96	4.4	96	92	1	632	29	20	16	33	1.95
49512856--49513480	44	13.9	44	70	11	192	31	20	14	33	1.93
49512753--49513122	96	3.9	94	73	11	317	32	18	14	34	1.91
49513133--49513293	86	1.9	86	88	2	243	32	21	14	31	1.93
49520131--49520186	3	18.7	3	78	14	62	66	3	3	26	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49524998--49525025	14	2.0	14	100	0	56	28	21	14	35	1.92
49527168--49527331	42	3.9	42	79	9	172	33	14	20	31	1.92
49528715--49528747	17	1.9	17	100	0	66	6	18	42	33	1.75
49530101--49530156	27	2.1	27	100	0	112	48	3	3	44	1.37
49538327--49538377	26	1.9	27	84	4	68	23	25	29	21	1.99
49544282--49544322	16	2.5	17	88	4	57	48	2	14	34	1.57
49544227--49544310	5	15.6	5	71	14	51	42	3	19	34	1.68
49552195--49552251	18	3.2	18	82	0	78	33	15	22	28	1.95
49552593--49552633	21	2.0	21	95	0	73	34	12	9	43	1.75
49555251--49555337	42	2.1	42	100	0	174	36	13	4	44	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186