genome.fa.s20.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  178  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59016462--59016500	16	2.4	16	91	0	60	0	30	0	69	0.89
59016529--59016574	16	2.8	17	83	6	58	13	13	0	73	1.09
59016525--59016562	10	3.7	10	86	13	51	5	15	0	78	0.91
59018023--59018170	41	3.6	41	76	8	122	33	16	27	22	1.95
59028880--59028907	6	4.7	6	100	0	56	71	0	14	14	1.15
59029245--59029471	120	1.9	120	89	0	355	32	18	18	29	1.95
59036534--59036627	44	2.1	45	86	2	127	22	13	25	38	1.91
59036547--59036709	44	3.8	44	76	7	138	23	17	26	31	1.97
59042914--59042949	17	2.1	17	100	0	72	38	22	16	22	1.93
59050680--59050870	19	10.3	18	71	16	97	50	14	16	18	1.78
59050680--59050870	6	31.0	6	71	16	124	50	14	16	18	1.78
59050694--59050765	37	1.9	37	88	0	108	51	12	16	19	1.76
59050743--59050809	25	2.7	25	92	0	116	47	14	19	17	1.82
59050740--59050850	31	3.6	30	76	13	118	48	15	17	18	1.81
59050768--59050844	37	2.1	37	87	0	109	49	16	16	16	1.80
59050768--59050870	25	4.4	25	70	22	64	48	15	17	18	1.81
59051109--59051160	27	2.0	26	84	3	68	34	21	26	17	1.95
59051388--59051673	27	10.6	27	86	0	365	41	7	21	29	1.80
59051388--59051673	81	3.5	81	86	1	403	41	7	21	29	1.80
59051388--59051707	81	3.9	78	73	11	243	41	7	21	29	1.80
59055221--59055263	23	1.9	22	85	4	59	48	30	4	16	1.66
59065055--59065180	46	2.7	46	96	0	225	29	27	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59065057--59065199	46	3.1	45	88	4	146	28	28	21	20	1.98
59074265--59074306	21	2.0	21	100	0	84	42	9	28	19	1.82
59077254--59077323	35	2.0	35	100	0	140	37	14	17	31	1.89
59078808--59078880	37	2.0	37	86	5	103	46	0	5	47	1.25
59079012--59079103	46	2.0	44	87	8	132	39	23	4	32	1.75
59079082--59079121	16	2.5	16	88	8	55	25	27	7	40	1.82
59079279--59079342	29	2.2	30	81	13	71	67	3	6	23	1.28
59094834--59094899	28	2.3	29	86	2	98	30	31	13	24	1.94
59097667--59097769	42	2.4	43	79	7	120	24	14	17	43	1.86
59097667--59097769	43	2.4	42	79	10	111	24	14	17	43	1.86
59110188--59110357	92	1.8	94	82	2	218	24	21	28	25	1.99
59112319--59112387	16	4.5	16	68	23	58	56	11	1	30	1.44
59112301--59112387	45	1.9	45	100	0	174	58	9	2	29	1.41
59112388--59112417	15	2.0	15	93	0	51	40	10	0	50	1.36
59113952--59114606	137	4.9	135	77	5	551	31	24	17	25	1.97
59113973--59114596	268	2.3	264	80	4	662	31	25	17	25	1.97
59116600--59116748	81	1.8	81	80	8	178	21	18	32	27	1.96
59121140--59121193	24	2.1	27	83	10	69	29	7	5	57	1.49
59126685--59126841	43	3.6	44	76	12	164	26	17	24	31	1.97
59128980--59129031	19	2.7	19	87	0	68	21	21	28	28	1.98
59135864--59136189	47	7.0	47	98	0	629	29	10	32	27	1.90
59141867--59141914	24	2.0	24	100	0	96	33	16	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59149629--59149661	16	1.9	18	88	11	52	39	3	12	45	1.57
59150613--59150664	23	2.2	24	86	3	70	48	0	1	50	1.12
59152362--59152398	3	12.3	3	100	0	74	67	0	0	32	0.91
59163584--59163630	22	2.1	22	100	0	94	65	8	8	17	1.44
59171894--59172104	42	4.9	42	75	7	172	26	16	27	29	1.97
59171933--59172104	90	1.9	90	83	2	220	26	17	27	28	1.98
59200392--59200490	48	2.1	48	90	3	155	28	15	29	27	1.96
59200586--59200694	42	2.6	42	86	0	164	24	19	30	25	1.98
59204585--59204857	46	5.9	46	83	1	323	22	23	11	42	1.86
59204585--59204853	92	2.9	92	86	2	362	21	23	11	42	1.86
59211346--59211743	101	4.0	100	79	5	397	25	18	25	30	1.98
59211344--59211742	152	2.6	150	92	2	647	25	18	25	31	1.98
59211301--59211743	102	4.4	100	76	7	401	25	17	25	31	1.97
59211301--59211743	50	8.8	50	79	5	444	25	17	25	31	1.97
59211301--59211753	152	3.0	153	88	1	644	25	17	25	31	1.97
59217263--59217317	27	2.0	27	100	0	110	29	21	3	45	1.69
59217271--59217326	27	2.2	26	87	6	78	33	23	5	37	1.78
59218739--59218914	46	3.8	47	82	7	200	26	21	31	21	1.98
59218742--59218956	94	2.3	94	81	7	231	27	20	28	22	1.99
59227398--59227624	46	4.9	46	91	1	330	21	23	13	41	1.88
59232693--59232735	22	1.9	23	90	4	70	23	6	30	39	1.81
59242263--59242594	114	2.9	114	82	9	374	25	8	16	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59242246--59242598	117	3.1	115	80	8	402	24	8	17	49	1.74
59243941--59243982	19	2.2	19	95	0	75	42	11	33	11	1.78
59247209--59247373	49	3.5	46	74	8	145	29	29	16	24	1.97
59247209--59247416	93	2.2	95	83	7	255	28	28	17	25	1.98
59247350--59247563	46	4.5	48	78	4	222	22	27	20	30	1.98
59247252--59247563	46	6.6	48	73	10	193	25	27	19	27	1.98
59247350--59247563	94	2.3	93	84	8	290	22	27	20	30	1.98
59250356--59250391	18	2.0	18	88	0	54	25	22	13	38	1.91
59253808--59253936	49	2.6	49	81	0	159	24	25	19	30	1.98
59259095--59259202	26	4.2	26	91	0	180	32	7	23	37	1.82
59260794--59260934	27	5.2	27	78	14	130	19	25	21	33	1.97
59260791--59260934	54	2.7	54	89	2	218	18	25	22	33	1.97
59260794--59260952	81	2.0	80	81	10	191	20	25	20	33	1.97
59262011--59262080	32	2.2	31	94	2	122	28	5	10	55	1.55
59266913--59267018	27	3.9	27	87	0	140	23	14	19	42	1.88
59270795--59270865	37	1.9	37	88	0	106	38	1	19	40	1.61
59273164--59273212	13	3.8	13	77	0	53	30	16	18	34	1.93
59273360--59273419	24	2.5	23	76	10	57	31	21	11	35	1.90
59273999--59274085	40	2.2	40	91	4	140	22	24	13	39	1.91
59276408--59276444	18	2.1	18	90	5	58	16	40	27	16	1.89
59291205--59291420	39	5.5	39	92	1	351	28	27	23	20	1.99
59291203--59291469	117	2.3	118	83	5	344	27	26	22	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59291434--59291544	39	2.8	39	91	0	186	27	25	18	27	1.98
59299818--59299842	4	6.2	4	100	0	50	52	24	0	24	1.48
59306628--59306678	22	2.3	22	100	0	102	11	33	31	23	1.91
59310768--59310972	44	4.5	45	75	14	170	26	19	30	23	1.98
59315060--59315085	13	2.0	13	100	0	52	30	0	15	53	1.42
59316129--59316245	43	2.8	42	79	5	128	29	15	23	31	1.95
59318033--59318088	30	1.9	30	85	7	80	32	32	19	16	1.94
59318040--59318098	30	2.0	28	83	6	73	30	32	20	16	1.95
59319747--59319855	37	2.9	37	94	0	182	26	30	19	23	1.98
59320002--59320346	48	7.1	48	88	5	505	31	27	6	35	1.82
59320002--59320346	146	2.4	146	95	0	618	31	27	6	35	1.82
59320002--59320346	98	3.6	96	88	4	514	31	27	6	35	1.82
59322810--59322880	24	3.0	23	77	8	79	38	19	25	16	1.93
59331789--59331859	35	2.0	35	94	0	124	29	22	26	21	1.99
59337977--59338018	15	2.7	16	82	14	52	45	0	2	52	1.13
59337968--59338009	15	2.9	15	82	10	52	47	0	0	52	1.00
59338163--59338253	45	2.0	44	85	2	119	35	28	5	30	1.80
59338234--59338301	16	4.2	16	94	0	118	35	36	0	27	1.58
59338855--59338901	20	2.4	19	86	10	60	34	6	0	59	1.23
59339494--59339540	23	2.0	23	100	0	94	40	21	17	21	1.91
59359842--59359957	43	2.7	42	84	4	135	20	18	29	31	1.97
59359927--59360026	51	2.0	51	81	0	119	22	17	28	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59362481--59362528	25	1.9	25	83	8	62	18	2	4	75	1.07
59365971--59366008	6	6.3	6	88	11	60	15	0	2	81	0.80
59367491--59367524	14	2.4	14	95	0	59	38	29	5	26	1.80
59376225--59376297	33	2.3	32	81	6	96	28	21	27	21	1.99
59383830--59383859	16	1.9	15	93	6	51	73	10	0	16	1.09
59384467--59384719	87	2.9	87	98	1	490	35	15	12	35	1.85
59389070--59389096	11	2.5	11	100	0	54	40	18	18	22	1.91
59392293--59392317	12	2.1	12	100	0	50	68	8	8	16	1.38
59394837--59394877	21	2.0	21	90	0	64	19	29	21	29	1.98
59399623--59399669	22	2.1	22	84	7	60	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186