genome.fa.s20.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  161  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53554400--53554461	24	2.8	22	82	7	63	62	3	4	29	1.31
53554409--53554461	24	2.3	22	87	6	70	66	1	5	26	1.25
53561000--53561171	79	2.2	79	84	3	220	25	21	27	25	1.99
53560947--53561169	40	5.6	39	81	8	209	25	21	27	25	1.99
53561027--53561204	79	2.2	80	80	3	191	25	21	28	24	1.99
53566604--53566658	28	1.9	29	81	3	67	50	12	16	20	1.77
53572896--53572935	16	2.4	17	87	8	55	70	2	0	27	1.01
53573853--53573887	16	2.2	16	94	0	61	80	2	5	11	1.00
53576307--53576389	21	4.0	21	80	0	85	40	16	26	15	1.89
53576340--53576435	42	2.3	42	81	3	113	44	15	22	16	1.86
53576429--53576481	20	2.6	21	76	11	56	43	11	18	26	1.84
53577915--53578016	37	2.8	37	93	0	168	26	29	18	25	1.98
53578135--53578308	47	3.7	49	84	7	234	28	29	8	33	1.87
53581723--53581764	17	2.5	17	92	0	66	57	11	23	7	1.59
53582707--53582760	27	2.0	27	96	0	99	37	24	14	24	1.93
53586572--53586641	34	2.1	34	100	0	140	31	0	21	47	1.51
53590332--53590553	111	2.0	111	96	0	408	31	18	20	30	1.96
53592875--53592913	18	2.0	20	85	9	55	38	7	7	46	1.61
53597723--53597772	8	6.4	8	84	6	59	52	4	0	44	1.20
53597870--53597917	17	2.9	17	81	3	53	41	4	0	54	1.20
53597941--53598009	31	2.3	29	85	5	84	37	2	5	53	1.40
53597967--53598065	29	3.5	27	81	9	108	30	2	3	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53598695--53598778	41	2.0	42	88	6	125	36	7	4	51	1.51
53598878--53598903	9	2.9	9	100	0	52	57	0	0	42	0.98
53603405--53603477	34	2.1	34	82	0	83	35	24	13	26	1.93
53603533--53603585	27	2.0	27	88	0	70	28	24	9	37	1.86
53603648--53603733	31	2.7	31	77	18	95	27	29	13	29	1.95
53603721--53603833	33	3.5	32	84	9	149	25	22	13	38	1.90
53608236--53608280	23	2.0	23	82	8	56	35	24	2	37	1.68
53608514--53608578	19	3.2	21	71	20	66	40	16	26	16	1.90
53608496--53608596	39	2.6	39	88	0	148	36	19	27	15	1.93
53609803--53609837	16	2.1	18	89	10	56	37	14	2	45	1.59
53610904--53611029	62	2.0	62	93	3	218	38	23	7	31	1.82
53633302--53633341	21	1.9	21	85	10	55	60	15	17	7	1.57
53635229--53635305	21	3.7	21	94	0	136	33	16	27	22	1.95
53636969--53637049	25	3.2	25	63	16	67	17	19	8	54	1.68
53636960--53637061	51	2.0	51	98	0	195	19	20	9	50	1.76
53642090--53642125	17	2.1	17	90	10	56	50	0	0	50	1.00
53645689--53645757	33	2.1	33	97	0	129	14	24	11	49	1.77
53647441--53647479	19	2.1	19	85	4	53	12	12	12	61	1.57
53664595--53664644	21	2.4	21	89	0	73	38	8	32	22	1.83
53664946--53664990	22	2.2	20	88	8	63	71	0	26	2	0.98
53666078--53666207	66	2.0	66	81	6	156	23	21	21	33	1.97
53669571--53669620	23	2.1	24	85	3	66	40	26	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53671494--53671563	28	2.5	28	88	9	99	31	27	14	27	1.95
53675209--53675761	273	2.0	273	96	0	1007	33	25	11	29	1.91
53685692--53685721	14	2.1	14	93	0	51	60	0	0	40	0.97
53689889--53689935	24	2.0	24	100	0	94	46	4	40	8	1.54
53690922--53690963	22	1.9	22	85	9	59	40	14	23	21	1.90
53692625--53692669	22	2.0	22	100	0	90	31	31	15	22	1.95
53693787--53693815	14	2.0	15	93	6	51	37	6	6	48	1.57
53693984--53694075	15	5.9	15	82	8	96	42	4	25	28	1.74
53694018--53694075	17	3.6	17	90	6	86	43	3	24	29	1.70
53694849--53694899	25	2.1	24	81	3	57	23	33	27	15	1.95
53697500--53697570	28	2.5	28	79	0	79	33	26	8	30	1.86
53700999--53701047	22	2.2	22	85	0	62	32	12	22	32	1.91
53707777--53707945	46	3.7	46	85	0	223	16	21	17	44	1.86
53707777--53707957	91	2.0	91	84	2	238	16	19	18	45	1.85
53707787--53707987	91	2.2	91	81	3	217	17	19	16	46	1.85
53707962--53708169	45	4.6	45	86	2	258	25	21	16	35	1.95
53707955--53708169	89	2.4	89	82	5	245	25	21	17	35	1.95
53707982--53708169	89	2.1	90	87	1	270	26	21	17	35	1.95
53708182--53708303	46	2.7	46	88	2	183	20	17	18	44	1.87
53710151--53710201	26	2.0	25	81	7	59	49	1	7	41	1.43
53716033--53716057	3	8.3	3	100	0	50	68	0	0	32	0.90
53716056--53716086	3	10.3	3	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53716823--53716856	17	1.9	17	88	5	50	26	11	0	61	1.30
53719545--53719581	9	3.9	9	89	10	56	2	13	0	83	0.74
53724511--53724538	8	3.5	8	100	0	56	28	21	0	50	1.49
53730590--53730617	8	3.5	8	100	0	56	28	21	0	50	1.49
53730929--53731049	59	2.1	59	98	0	233	28	13	29	28	1.94
53735399--53735423	13	1.9	13	100	0	50	32	0	4	64	1.12
53736044--53736068	13	1.9	13	100	0	50	64	4	0	32	1.12
53736185--53736214	13	2.2	14	94	5	53	66	0	0	33	0.92
53738946--53738995	24	2.1	24	100	0	100	60	0	4	36	1.16
53740399--53740490	29	3.2	29	60	9	71	41	7	9	41	1.66
53740381--53740497	57	2.1	57	98	0	225	43	8	12	35	1.74
53743160--53743184	12	2.1	12	100	0	50	24	40	0	36	1.55
53746618--53746652	12	2.9	12	95	0	61	25	8	31	34	1.86
53746788--53746875	31	2.8	32	89	3	133	17	9	42	31	1.80
53747164--53747231	33	2.1	33	100	0	136	36	11	19	32	1.88
53752556--53752658	44	2.3	45	84	3	127	31	21	13	33	1.92
53752575--53752663	46	2.0	44	88	4	133	29	24	13	32	1.93
53766923--53766969	19	2.5	18	90	10	76	14	14	4	65	1.41
53769570--53769632	30	2.1	30	88	5	92	58	11	3	26	1.47
53769661--53769720	11	5.3	11	84	7	75	75	3	1	20	1.04
53769661--53769720	23	2.6	22	82	7	75	75	3	1	20	1.04
53774955--53774995	22	1.9	22	85	5	57	39	12	12	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53775150--53775256	54	2.0	54	87	3	153	17	34	20	27	1.95
53775967--53775991	12	2.1	12	100	0	50	8	28	40	24	1.83
53806959--53806994	18	2.0	18	100	0	72	27	16	5	50	1.68
53811471--53811598	48	2.7	48	83	2	150	24	18	26	30	1.98
53811464--53811616	48	3.2	48	76	3	112	26	18	24	30	1.98
53811506--53811731	48	4.8	48	71	14	146	25	19	24	29	1.99
53813738--53813989	40	6.3	39	92	3	371	26	27	20	25	1.99
53813738--53814034	120	2.5	120	87	5	399	26	27	20	25	1.99
53813738--53814041	80	3.8	79	89	5	402	25	27	21	25	1.99
53821808--53822032	79	2.8	78	84	6	274	25	27	22	24	2.00
53821808--53822032	40	5.7	40	86	6	273	25	27	22	24	2.00
53830030--53830211	48	3.9	48	68	17	146	25	20	24	29	1.99
53832094--53832387	38	7.0	38	75	15	203	29	23	15	30	1.95
53832101--53832307	85	2.4	85	95	0	360	29	23	14	31	1.95
53832143--53832350	47	4.6	47	79	11	254	29	22	15	31	1.95
53832219--53832357	48	2.9	48	87	3	192	29	21	15	33	1.95
53832143--53832387	133	1.8	132	91	0	400	29	23	15	31	1.96
53835103--53835144	15	2.8	15	85	0	57	52	11	16	19	1.74
53837571--53837657	41	2.2	40	82	2	102	65	6	2	25	1.29
53838967--53839417	38	10.9	38	73	16	353	30	23	15	30	1.95
53838974--53839383	85	4.8	85	99	0	802	30	23	15	31	1.95
53839016--53839345	47	7.6	47	74	17	345	30	22	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53840535--53840670	26	5.3	26	88	3	190	27	23	20	28	1.99
53841454--53841540	27	3.2	27	90	3	122	18	25	20	35	1.95
53841658--53841828	27	6.3	26	72	12	98	28	9	21	40	1.84
53841683--53841917	81	2.9	81	87	1	276	28	8	21	41	1.82
53841685--53841931	27	9.2	27	81	4	212	29	8	21	40	1.83
53841685--53841971	54	5.4	54	77	5	233	29	8	21	40	1.82
53841883--53841955	27	2.7	27	91	0	110	34	5	23	36	1.78
53841659--53842002	54	6.4	54	75	6	155	30	8	20	40	1.82
53846951--53847013	30	2.1	29	94	2	108	33	22	17	26	1.96
53850538--53850568	12	2.6	12	100	0	62	29	32	22	16	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186