genome.fa.s20.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  185  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61237039--61237081	21	2.1	21	86	4	61	51	20	0	27	1.48
61242046--61242092	13	3.6	13	75	11	51	31	10	14	42	1.80
61242039--61242115	26	3.0	26	92	0	118	31	15	12	40	1.85
61245998--61246167	46	3.7	45	77	17	179	25	20	31	22	1.98
61245997--61246255	140	1.8	140	85	5	362	26	18	31	24	1.97
61245988--61246255	94	2.9	93	76	13	266	25	17	31	25	1.97
61256462--61256528	34	2.0	34	96	0	125	34	11	20	32	1.90
61257040--61257526	40	12.2	40	95	1	762	23	18	26	31	1.98
61262462--61262708	40	6.2	40	84	3	268	26	27	22	23	1.99
61262485--61262667	79	2.3	80	87	0	260	26	27	22	23	1.99
61269487--61269595	27	4.0	26	81	8	119	18	22	21	37	1.94
61269487--61269595	54	2.0	54	83	3	139	18	22	21	37	1.94
61273361--61273418	25	2.3	25	82	11	66	65	1	12	20	1.34
61273361--61273425	26	2.4	25	82	15	67	66	1	12	20	1.32
61287913--61288051	43	3.2	42	81	8	113	35	23	14	26	1.93
61287987--61288070	43	2.0	43	90	0	132	32	25	15	27	1.95
61289873--61289969	34	3.1	34	61	27	88	34	2	22	41	1.66
61289859--61289973	58	2.0	58	100	0	230	33	1	20	43	1.62
61295417--61295641	40	5.7	40	83	4	222	24	20	28	27	1.99
61295492--61295674	79	2.3	80	81	1	217	25	20	27	26	1.99
61303318--61303540	40	5.6	40	86	3	227	24	20	27	26	1.99
61303393--61303575	79	2.3	80	81	1	217	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61304925--61304972	20	2.4	20	92	0	78	33	16	18	31	1.94
61305021--61305126	24	4.4	24	91	3	151	29	21	20	28	1.98
61305023--61305119	47	2.1	47	94	0	167	28	21	19	29	1.98
61305333--61305394	31	2.0	31	90	0	97	37	16	22	24	1.94
61313016--61313071	11	5.5	11	71	16	57	35	14	19	30	1.91
61313005--61313071	20	3.3	20	87	0	98	34	13	20	31	1.92
61313120--61313197	24	3.2	24	87	3	95	32	19	19	29	1.96
61313410--61313470	31	2.0	31	86	0	86	32	16	24	26	1.96
61319671--61319715	22	2.0	22	83	8	56	13	28	24	33	1.93
61322283--61322372	45	2.0	44	97	2	171	40	17	20	21	1.91
61323163--61323260	33	3.1	33	68	14	105	21	23	18	36	1.95
61325374--61325468	48	2.0	48	93	0	163	23	7	38	30	1.82
61329478--61329583	55	1.9	55	86	3	151	20	24	35	18	1.95
61344593--61344677	42	2.0	42	90	0	134	28	15	23	32	1.95
61346833--61346942	54	2.0	55	92	1	186	43	10	19	26	1.83
61349751--61349915	41	4.1	40	71	17	133	28	27	21	23	1.99
61358072--61358218	41	3.6	41	74	15	126	28	27	21	22	1.99
61379610--61379876	40	6.7	40	94	0	462	21	27	20	30	1.98
61387430--61387777	40	8.7	40	95	0	615	22	27	20	30	1.98
61390085--61390156	18	3.8	18	75	20	58	12	4	5	77	1.08
61390094--61390149	18	2.8	21	76	10	64	12	3	7	76	1.11
61390103--61390156	28	1.9	28	82	14	67	12	3	3	79	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61391609--61391676	27	2.5	27	95	0	118	29	4	14	51	1.62
61391891--61392011	30	4.0	30	94	0	170	24	28	30	16	1.97
61393229--61393910	341	2.0	341	100	0	1364	41	13	11	34	1.80
61402763--61402815	22	2.5	22	93	3	90	28	15	15	41	1.87
61404662--61404829	40	4.2	40	90	1	250	30	26	21	22	1.99
61412673--61412830	40	4.0	40	86	4	185	30	25	21	22	1.99
61417167--61418114	40	23.7	40	99	0	1842	20	27	20	32	1.97
61426179--61426443	40	6.7	40	82	5	259	26	27	20	25	1.99
61426146--61426443	80	3.8	79	78	4	255	25	27	20	26	1.99
61426375--61426452	40	1.9	41	82	10	97	26	28	20	24	1.99
61431199--61431376	27	6.6	27	81	3	187	27	15	26	29	1.96
61431200--61431355	82	1.9	81	85	3	215	27	16	26	29	1.96
61431196--61431376	82	2.2	81	80	2	211	27	16	26	29	1.96
61435608--61435653	22	2.1	22	100	0	92	36	13	8	41	1.75
61437009--61437131	46	2.6	48	81	3	151	28	16	29	26	1.97
61437862--61437901	21	2.0	20	85	14	55	25	25	37	12	1.91
61439162--61439201	21	2.0	20	85	14	55	12	37	25	25	1.91
61445512--61445645	46	2.9	46	82	9	166	29	19	29	22	1.98
61461607--61461662	28	2.0	29	85	3	78	14	21	44	19	1.86
61472714--61472741	14	2.0	14	100	0	56	35	7	21	35	1.81
61476669--61476883	48	4.6	48	82	3	235	27	27	19	25	1.99
61483438--61483584	45	3.2	45	67	17	138	29	25	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61483408--61483642	94	2.5	94	98	0	454	28	26	17	26	1.98
61483366--61483735	48	7.8	48	73	12	289	27	26	18	27	1.98
61484538--61484580	21	2.0	21	95	0	77	41	11	23	23	1.87
61485095--61485633	104	5.2	103	78	4	440	29	17	21	31	1.97
61485095--61485633	208	2.6	207	80	3	589	29	17	21	31	1.97
61501916--61501967	24	2.2	24	92	0	86	51	7	3	36	1.49
61508915--61508949	17	2.0	18	88	5	54	14	40	28	17	1.88
61522147--61522209	29	2.2	29	88	5	92	23	15	31	28	1.96
61525979--61526045	29	2.3	29	92	7	111	25	11	31	31	1.92
61527341--61527373	18	1.9	17	88	11	50	45	12	15	27	1.81
61527694--61528091	198	2.0	199	95	0	717	34	22	13	28	1.93
61535690--61535762	29	2.5	30	81	18	93	30	27	15	27	1.96
61544120--61544292	93	1.9	93	90	2	276	30	27	19	22	1.98
61544113--61544290	46	3.8	46	76	14	177	31	26	19	22	1.98
61556222--61556400	85	2.1	85	98	0	349	38	8	27	25	1.85
61557124--61557216	40	2.3	41	90	3	145	23	20	27	27	1.99
61563174--61563777	85	7.1	85	99	0	1190	38	7	26	27	1.83
61564944--61565126	79	2.3	81	84	7	232	24	22	27	25	2.00
61564945--61565128	40	4.6	40	83	9	216	23	22	28	25	2.00
61564997--61565161	79	2.1	79	84	6	210	25	21	27	25	1.99
61567791--61567984	47	4.1	47	90	0	280	32	10	29	26	1.90
61567838--61567916	25	3.3	25	65	22	69	30	10	30	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61567820--61567891	22	3.1	22	64	24	58	31	13	30	23	1.94
61567865--61567940	23	3.2	25	62	24	63	28	13	34	23	1.92
61567955--61568090	50	2.8	48	86	8	211	36	7	26	30	1.84
61567949--61568111	50	3.3	50	80	14	201	33	7	28	30	1.86
61568236--61568344	37	2.9	37	95	0	191	22	19	31	26	1.98
61572424--61572557	68	2.0	68	96	0	250	25	29	15	29	1.96
61572808--61573001	99	2.0	99	91	0	316	28	29	12	29	1.93
61576490--61577029	270	2.0	270	99	0	1071	29	21	17	32	1.95
61586445--61586485	21	2.0	20	85	4	55	24	26	36	12	1.91
61587727--61587901	49	3.6	49	80	5	160	25	28	19	27	1.99
61590350--61590862	256	2.0	256	98	0	999	43	7	22	27	1.79
61600269--61600306	11	3.5	11	89	7	60	71	0	7	21	1.11
61601775--61601860	42	2.0	42	95	0	154	34	20	17	26	1.95
61628947--61628984	15	2.4	16	86	4	51	65	2	0	31	1.06
61628947--61628981	16	2.2	16	89	0	52	68	2	0	28	1.04
61629456--61629504	16	3.2	16	85	11	75	53	0	16	30	1.43
61629457--61629511	14	3.7	14	90	7	74	49	0	16	34	1.46
61629698--61629742	5	9.0	5	85	9	56	73	2	2	22	1.05
61629845--61629887	17	2.4	19	88	11	65	51	9	6	32	1.61
61633114--61633173	24	2.5	24	81	10	70	5	25	1	68	1.19
61635323--61635347	7	3.6	7	100	0	50	12	0	12	76	1.04
61635462--61635487	13	2.0	13	100	0	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61637688--61637720	15	2.2	15	100	0	66	36	0	30	33	1.58
61640187--61640266	40	2.0	40	100	0	160	37	5	22	35	1.76
61641866--61642049	100	1.8	100	90	2	298	29	25	18	27	1.98
61641874--61642055	49	3.7	50	80	5	208	29	25	17	26	1.98
61651895--61652073	46	3.8	49	76	13	180	29	28	20	21	1.98
61651904--61652073	93	1.8	93	89	0	268	28	28	20	22	1.99
61655001--61655224	40	5.6	40	85	6	292	25	25	23	25	2.00
61655001--61655224	83	2.8	80	86	5	292	25	25	23	25	2.00
61657308--61657337	5	5.8	5	92	7	51	83	0	0	16	0.65
61657308--61657338	11	2.9	11	95	4	55	83	0	0	16	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186