genome.fa.s20.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  82  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26702871--26702925	28	2.0	28	100	0	110	21	10	14	52	1.72
26716538--26716700	46	3.5	46	70	19	131	29	28	19	22	1.98
26716583--26716745	47	3.5	47	73	11	172	31	28	18	22	1.97
26716538--26716801	93	2.8	93	90	1	404	30	28	18	22	1.98
26716630--26716794	46	3.6	46	71	14	158	33	27	16	22	1.96
26721334--26721367	17	2.0	17	94	0	59	55	0	5	38	1.24
26722541--26722632	24	3.8	24	79	0	103	21	14	26	38	1.91
26730922--26731013	42	2.2	42	92	0	148	34	21	14	29	1.93
26732087--26732153	27	2.5	27	97	0	125	41	10	22	25	1.85
26735605--26735658	27	2.0	27	100	0	108	29	11	14	44	1.80
26737354--26737394	21	2.0	20	95	4	73	31	0	24	43	1.54
26744495--26744661	83	2.0	83	89	2	255	31	17	26	24	1.97
26755604--26755735	42	3.1	41	77	6	138	32	13	22	31	1.93
26755604--26755810	43	4.9	42	77	4	166	31	15	22	29	1.95
26760120--26760230	27	4.1	27	88	5	154	37	22	24	15	1.93
26761655--26761707	24	2.2	24	89	0	79	20	43	3	32	1.70
26763872--26763944	38	1.9	38	88	0	110	32	9	26	31	1.88
26779277--26779407	47	2.8	48	82	3	140	34	27	14	23	1.94
26781981--26782186	40	5.2	40	91	2	326	28	27	21	23	1.99
26786745--26786799	27	2.0	27	92	0	92	27	27	9	36	1.87
26789251--26789416	40	4.2	40	96	0	289	26	27	22	22	1.99
26793289--26793540	126	2.0	126	98	0	486	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26796054--26796196	76	1.9	76	94	0	250	37	21	13	26	1.91
26797639--26797862	40	5.6	40	84	8	285	25	26	23	25	2.00
26797639--26797862	83	2.8	80	85	6	294	25	26	23	25	2.00
26803823--26803963	40	3.5	40	85	5	196	24	24	26	23	2.00
26815485--26815750	40	6.7	40	92	1	401	24	21	27	26	1.99
26815492--26815783	120	2.4	120	86	3	385	26	20	27	26	1.99
26823774--26824038	40	6.7	40	85	5	286	26	27	21	24	1.99
26823741--26824038	80	3.7	80	79	9	263	25	27	21	25	1.99
26823970--26824047	40	1.9	41	82	10	97	26	28	20	24	1.99
26850133--26850203	37	1.9	37	94	0	124	15	28	29	26	1.96
26859003--26859298	27	10.9	27	87	0	358	41	21	17	19	1.91
26858999--26859270	109	2.5	106	87	5	391	41	22	16	18	1.90
26860633--26860818	54	3.5	52	73	13	135	37	17	22	22	1.94
26860621--26860828	53	3.9	53	75	8	195	37	16	22	23	1.94
26863198--26863326	43	3.0	43	91	0	204	31	31	24	13	1.93
26879032--26879167	55	2.5	53	77	3	139	36	21	22	19	1.96
26879035--26879175	52	2.6	53	77	3	131	35	19	24	20	1.96
26883510--26883555	20	2.4	19	82	7	56	23	2	2	71	1.08
26888889--26889184	46	6.3	47	70	11	153	25	30	17	26	1.98
26889987--26890051	31	2.1	31	100	0	130	50	3	30	15	1.59
26895296--26895335	21	2.0	20	90	5	62	27	35	27	10	1.89
26896096--26896166	30	2.4	30	90	4	108	49	15	7	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26896632--26896943	49	6.6	49	71	11	163	24	29	18	27	1.98
26896784--26896948	46	3.5	47	79	8	176	21	29	20	28	1.98
26900331--26900371	20	2.1	20	86	4	57	26	0	24	48	1.51
26903913--26904060	43	3.5	40	77	9	125	27	16	25	30	1.96
26904237--26904281	19	2.4	18	85	14	56	48	2	15	33	1.57
26904350--26904398	22	2.2	22	100	0	98	36	4	10	48	1.56
26908818--26908862	19	2.4	18	85	14	56	48	2	15	33	1.57
26908931--26908979	22	2.2	22	100	0	98	36	4	10	48	1.56
26915838--26916067	27	8.6	27	82	4	250	36	19	18	25	1.95
26915835--26916067	107	2.2	108	82	3	292	36	19	18	25	1.95
26916462--26916583	6	19.8	6	74	14	97	16	18	16	48	1.82
26916462--26916523	25	2.5	25	91	0	97	17	19	16	46	1.84
26916462--26916588	43	2.9	43	82	4	148	17	18	16	48	1.82
26916462--26916583	19	6.6	18	75	13	97	16	18	16	48	1.82
26916526--26916592	18	3.7	18	82	11	57	17	16	16	49	1.80
26918224--26918285	27	2.3	27	88	0	88	32	14	12	40	1.84
26918267--26918540	27	10.2	27	77	6	243	31	10	20	38	1.86
26918267--26918540	107	2.5	106	83	5	327	31	10	20	38	1.86
26920019--26920100	28	2.9	28	92	0	128	31	12	29	26	1.92
26920507--26920547	21	1.9	22	85	5	57	41	4	21	31	1.74
26926651--26926725	28	2.7	29	87	4	109	33	12	24	30	1.91
26926845--26926958	40	2.8	42	73	17	105	21	18	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26927135--26927175	21	1.9	22	85	5	57	39	4	24	31	1.76
26928771--26928921	27	5.7	27	80	7	148	31	8	17	43	1.79
26933741--26933963	39	5.7	40	86	7	273	25	22	27	24	2.00
26933741--26933963	79	2.8	81	85	8	282	25	22	27	24	2.00
26933741--26933996	79	3.3	79	82	9	224	26	21	27	24	1.99
26941729--26941913	79	2.3	81	84	7	236	24	22	27	25	2.00
26941730--26941913	40	4.6	40	83	9	216	24	22	27	25	2.00
26941782--26941946	79	2.1	79	84	6	210	26	21	27	25	1.99
26943710--26943927	27	8.1	27	82	4	235	32	10	19	38	1.85
26944459--26944587	43	3.0	43	80	13	149	24	19	27	28	1.99
26951745--26951773	15	2.0	15	93	6	51	55	20	13	10	1.68
26952400--26952437	15	2.6	15	91	4	60	60	10	13	15	1.59
26965111--26965143	7	4.9	7	92	7	59	15	57	0	27	1.38
26971999--26972071	29	2.6	28	84	2	92	27	15	30	27	1.96
26981236--26981282	21	2.2	21	85	7	60	46	2	2	48	1.25
26981974--26982166	107	1.8	104	95	4	352	44	6	3	45	1.47
26982821--26982914	27	3.5	28	81	7	104	38	20	19	22	1.94
26985027--26985233	53	3.8	54	78	1	218	21	24	17	37	1.94
26996193--26996271	37	2.1	37	90	0	122	24	30	20	25	1.98
26996390--26996753	49	7.6	49	92	3	573	29	29	7	32	1.85
27007409--27007485	27	2.9	27	92	0	127	41	19	5	33	1.74
27007387--27007498	54	2.1	53	81	5	127	41	19	8	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27007578--27007717	27	5.2	27	80	3	158	36	17	19	26	1.94
27007578--27007714	53	2.6	53	81	6	154	36	17	19	26	1.94
27007922--27007984	25	2.5	25	94	5	110	25	22	25	26	2.00
27007922--27008016	50	1.9	50	80	8	113	27	21	23	28	1.99
27014287--27014411	61	2.0	61	95	0	223	36	8	25	30	1.85
27014688--27015628	48	19.6	48	98	0	1744	31	8	31	28	1.87
27015751--27015829	37	2.1	37	90	0	122	24	18	31	25	1.98
27024505--27024655	40	3.8	40	81	6	146	25	27	21	25	2.00
27024524--27024655	40	3.3	40	86	3	160	25	27	21	25	2.00
27024552--27024708	79	2.0	80	81	6	185	25	26	21	26	2.00
27025835--27025954	56	2.1	56	96	0	222	22	22	10	45	1.82
27026856--27026916	30	2.0	30	83	0	77	31	22	8	37	1.84
27030390--27030558	48	3.5	48	86	3	225	26	17	28	27	1.97
27031751--27031801	19	2.7	19	100	0	102	25	27	35	11	1.91
27042229--27042660	38	11.3	38	84	2	542	21	21	25	32	1.98
27044524--27044569	20	2.3	21	82	14	62	26	17	28	28	1.98
27045367--27045594	48	4.8	48	86	2	298	27	17	28	27	1.97
27052466--27052513	20	2.4	20	96	0	87	22	39	29	8	1.83
27053656--27053760	43	2.4	43	88	3	158	23	35	19	21	1.96
27054260--27054287	14	2.0	14	100	0	56	50	0	14	35	1.43
27055315--27055353	20	2.0	20	89	0	60	35	12	5	46	1.65
27068251--27068381	42	3.1	42	73	10	113	28	25	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27068392--27068433	21	2.0	21	90	0	66	23	28	19	28	1.98
27071519--27071740	46	4.8	47	77	12	192	27	19	30	22	1.98
27071524--27071792	46	5.8	44	76	14	179	28	19	28	23	1.98
27073782--27073868	42	2.1	42	84	0	111	21	16	29	32	1.95
27073851--27073941	43	2.1	43	95	0	164	25	20	19	34	1.97
27074744--27074775	13	2.4	14	94	5	57	53	9	0	37	1.34
27079819--27080013	9	21.7	9	70	13	89	36	1	14	47	1.54
27079871--27079982	30	3.6	30	72	17	111	36	2	14	46	1.59
27079850--27080013	64	2.6	64	92	0	274	35	1	15	47	1.56
27088187--27088254	29	2.3	29	82	5	84	27	29	13	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186