genome.fa.s20.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  138  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45617242--45617271	15	2.0	15	93	0	51	26	0	16	56	1.40
45618139--45618252	35	3.3	35	73	7	97	28	7	19	44	1.78
45621147--45621371	45	4.9	46	86	9	266	26	28	21	24	1.99
45621269--45621371	53	1.9	53	96	0	188	31	26	19	23	1.98
45624944--45625143	43	4.7	43	77	7	190	33	26	15	25	1.95
45624944--45625121	43	4.1	43	79	8	193	33	25	15	25	1.95
45628556--45628716	54	3.1	52	79	8	175	52	1	6	39	1.36
45628556--45628716	49	3.1	52	79	10	159	52	1	6	39	1.36
45628758--45628791	17	2.0	17	88	0	50	47	2	14	35	1.60
45659427--45659495	29	2.3	29	87	5	93	49	13	15	21	1.79
45669245--45669335	45	2.0	45	97	0	173	17	13	17	51	1.76
45669709--45669752	19	2.3	19	92	0	70	52	11	9	27	1.67
45674842--45674866	11	2.3	11	100	0	50	84	0	0	16	0.63
45675483--45675523	7	5.9	7	97	0	64	34	0	7	58	1.26
45683108--45683177	32	2.2	32	97	0	131	30	32	0	37	1.58
45683351--45683570	40	5.6	40	79	6	234	25	26	22	25	2.00
45683351--45683570	120	1.8	118	85	5	309	25	26	22	25	2.00
45694435--45694583	39	3.7	39	75	11	138	44	6	8	40	1.60
45698804--45698927	60	2.1	60	98	0	239	44	8	26	20	1.80
45700407--45700452	20	2.3	21	82	14	62	26	17	28	28	1.98
45700445--45700581	60	2.3	60	81	6	143	29	18	25	25	1.98
45700495--45700567	32	2.2	34	81	16	91	30	13	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45702294--45702479	92	2.0	92	96	0	345	39	18	4	38	1.70
45704789--45704843	27	2.0	27	89	0	83	14	32	21	30	1.93
45706007--45706044	19	2.0	20	85	15	53	39	23	0	36	1.55
45706275--45706444	93	1.8	93	94	0	304	28	29	20	21	1.98
45706269--45706441	46	3.7	46	77	13	201	30	28	20	21	1.98
45706864--45706923	30	2.0	30	90	0	93	30	25	8	36	1.85
45713246--45713514	46	5.7	46	71	10	161	29	17	28	24	1.97
45722025--45722208	40	4.6	40	81	6	203	25	23	26	25	2.00
45722025--45722208	80	2.3	80	83	3	228	25	23	26	25	2.00
45732630--45732660	16	1.9	16	93	0	53	45	6	0	48	1.28
45742114--45742594	100	4.8	100	97	0	865	30	13	18	38	1.89
45746273--45746359	27	3.2	27	85	9	124	35	24	22	17	1.95
45746465--45746527	26	2.3	26	83	5	72	30	11	25	33	1.90
45750785--45750853	36	1.9	36	90	0	111	31	18	11	37	1.87
45760582--45760906	162	2.0	162	100	0	650	34	18	22	24	1.96
45760850--45760962	41	2.8	41	90	0	181	33	25	23	17	1.96
45761091--45761140	25	2.0	25	100	0	100	44	4	8	44	1.52
45761156--45761237	21	3.7	22	76	13	96	30	1	25	42	1.63
45761163--45761253	46	2.0	46	93	4	157	30	2	25	41	1.67
45761293--45761340	21	2.3	20	80	16	53	22	2	41	33	1.66
45765258--45765291	17	1.9	18	94	5	61	35	11	29	23	1.90
45765545--45765595	20	2.4	22	75	21	54	58	1	0	39	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45765614--45765841	43	5.3	43	80	2	244	26	18	24	30	1.98
45765614--45765841	84	2.7	85	82	1	278	26	18	24	30	1.98
45771501--45771554	19	2.8	20	83	10	60	25	3	3	66	1.25
45771776--45771901	15	8.1	16	70	16	77	40	2	3	53	1.29
45772169--45772220	20	2.6	19	80	14	61	28	5	0	65	1.16
45784040--45784550	205	2.5	205	93	0	851	30	18	21	29	1.97
45784283--45784995	289	2.5	288	89	1	1088	30	17	21	29	1.96
45790112--45790152	20	2.0	22	85	9	59	46	7	4	41	1.53
45803486--45803573	43	2.1	42	89	2	131	34	31	14	19	1.92
45803547--45803651	43	2.5	42	77	11	115	30	29	18	21	1.97
45804929--45804965	14	2.8	13	88	8	56	35	18	5	40	1.74
45804936--45804967	14	2.3	14	100	0	64	25	21	6	46	1.74
45822448--45822526	37	2.1	37	88	0	113	25	30	18	25	1.98
45822649--45823103	47	9.6	47	96	0	748	28	30	9	31	1.88
45823012--45823090	25	3.3	25	63	10	65	32	29	5	32	1.79
45825623--45825662	20	2.0	20	100	0	80	60	10	10	20	1.57
45826188--45826220	17	1.9	17	93	0	57	75	0	24	0	0.80
45827101--45827171	3	24.0	3	97	2	135	0	33	0	66	0.92
45827680--45827725	17	2.6	19	83	10	62	8	19	0	71	1.11
45827648--45827728	18	4.4	19	70	14	62	6	24	2	66	1.27
45831733--45831788	16	3.5	16	95	0	94	33	7	28	30	1.84
45831770--45831863	44	2.1	45	86	11	131	32	3	26	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45831889--45831934	18	2.8	18	84	15	64	0	30	41	28	1.56
45833710--45833752	13	3.1	14	84	12	54	60	0	0	39	0.97
45836233--45836297	3	21.3	3	93	3	112	64	0	1	33	1.03
45838029--45838061	17	1.9	17	93	0	57	60	0	0	39	0.97
45838581--45838615	18	1.9	18	94	0	61	34	14	14	37	1.86
45838619--45838715	40	2.4	40	92	0	167	30	17	8	43	1.78
45839741--45839833	46	2.0	46	100	0	186	27	25	24	21	1.99
45840642--45840671	15	1.9	16	93	6	53	43	0	40	16	1.48
45843797--45843852	26	2.1	27	90	3	87	62	7	1	28	1.32
45847818--45847861	19	2.4	18	84	3	52	38	4	2	54	1.33
45848316--45848365	23	2.3	23	86	10	70	52	0	0	48	1.00
45848901--45848950	24	2.0	25	84	3	66	52	0	4	44	1.20
45848905--45848987	32	2.5	35	73	13	86	55	0	2	42	1.13
45849822--45849871	21	2.6	19	87	9	66	78	0	18	4	0.91
45851647--45851680	8	4.2	8	84	0	50	41	2	0	55	1.15
45855160--45855267	26	4.2	26	93	0	189	36	24	7	32	1.83
45867042--45867109	33	2.1	33	100	0	136	51	14	11	22	1.74
45869420--45869495	11	6.5	12	70	27	56	67	1	0	31	0.99
45869424--45869476	27	2.0	27	85	14	74	60	1	0	37	1.08
45869457--45869575	22	5.0	23	72	17	84	58	1	3	36	1.24
45869504--45869559	27	2.1	27	83	3	69	55	1	3	39	1.28
45869580--45869644	6	11.5	6	82	12	84	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45869546--45869633	33	2.8	31	89	6	99	46	1	0	52	1.08
45869563--45869633	33	2.2	33	100	0	142	46	0	0	53	1.00
45874915--45874962	23	2.0	24	84	4	62	33	2	2	62	1.18
45875160--45875244	37	2.3	37	100	0	170	47	9	14	29	1.75
45875871--45875917	23	2.0	24	91	4	78	55	0	0	44	0.99
45876088--45876130	15	2.9	15	78	0	50	60	2	2	34	1.22
45876126--45876166	18	2.2	20	91	8	68	68	2	0	29	1.03
45876258--45876320	29	2.2	29	82	5	74	36	7	1	53	1.40
45876316--45876380	28	2.2	30	89	5	98	38	1	3	56	1.24
45876327--45876392	30	2.2	29	79	12	71	39	0	3	57	1.14
45876404--45876434	11	2.7	11	95	5	53	32	0	0	67	0.91
45886760--45886806	24	2.0	24	83	8	60	42	6	10	40	1.65
45886914--45887048	62	2.3	59	82	7	166	48	3	5	42	1.43
45892336--45892420	42	2.0	42	100	0	170	28	11	11	48	1.75
45893373--45893457	42	2.0	42	100	0	170	28	11	11	48	1.75
45900606--45900659	22	2.4	22	81	3	72	42	12	7	37	1.72
45906912--45907084	43	4.0	42	71	11	127	23	17	27	31	1.97
45909466--45909498	12	2.8	12	95	0	57	24	21	9	45	1.80
45909622--45909678	18	3.2	17	80	5	60	43	14	12	29	1.81
45909629--45909688	18	3.3	18	78	0	66	41	11	13	33	1.80
45913605--45913737	40	3.3	40	80	9	121	29	18	25	27	1.98
45916720--45916812	17	5.5	16	76	10	78	32	35	17	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45916720--45916812	34	2.7	33	75	9	89	32	35	17	15	1.91
45924627--45924673	6	7.8	6	100	0	94	34	0	14	51	1.43
45925892--45925946	3	18.3	3	100	0	110	67	0	0	32	0.91
45926738--45926766	10	2.7	11	89	10	51	44	0	0	55	0.99
45931125--45931194	35	1.9	37	82	8	90	15	5	18	60	1.55
45931586--45931900	127	2.5	127	83	6	388	26	16	19	37	1.93
45935167--45935206	19	2.1	19	86	9	55	25	20	12	42	1.86
45943398--45943589	88	2.2	88	89	1	296	31	23	22	22	1.99
45943567--45943737	45	3.9	43	78	9	184	30	18	21	28	1.97
45943739--45943843	44	2.4	44	84	10	126	29	17	24	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186