genome.fa.s20.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  119  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39488064--39488227	54	3.0	53	83	3	195	35	14	20	29	1.92
39488064--39488227	81	2.0	81	82	2	195	35	14	20	29	1.92
39497461--39497541	41	2.0	40	90	2	126	38	17	22	22	1.93
39507421--39507462	22	2.0	22	90	4	68	16	38	21	23	1.93
39520830--39520891	27	2.3	26	78	10	63	14	14	11	59	1.61
39524996--39525053	20	2.9	20	81	0	80	31	8	13	46	1.74
39524969--39525053	40	2.1	40	85	8	111	28	9	15	47	1.76
39530918--39530950	15	2.2	15	94	0	57	39	9	18	33	1.82
39543572--39543632	30	2.0	30	100	0	122	37	32	13	16	1.87
39547928--39548022	39	2.4	39	76	16	99	44	4	1	50	1.28
39550940--39552049	228	4.9	227	82	2	1123	23	23	22	31	1.99
39550909--39552049	456	2.5	455	81	1	1293	23	23	22	30	1.99
39553486--39553511	12	2.2	12	100	0	52	30	7	0	61	1.24
39553565--39553595	16	2.0	15	93	6	53	58	0	0	41	0.98
39553608--39553664	26	2.2	26	90	0	87	56	7	5	31	1.49
39573713--39574015	40	7.6	40	90	2	405	24	20	27	27	1.99
39576842--39576901	21	2.9	21	78	11	70	38	31	13	16	1.87
39578262--39578304	20	2.2	20	100	0	86	25	25	13	34	1.93
39597108--39597174	35	1.9	35	100	0	134	23	26	19	29	1.98
39601310--39601386	40	1.9	40	89	5	120	22	28	24	24	1.99
39605621--39605654	18	1.9	18	88	5	52	29	17	11	41	1.85
39606907--39607003	28	3.5	28	85	4	115	23	38	17	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39612734--39613315	145	4.0	145	99	0	1137	35	20	11	33	1.88
39614042--39614172	46	2.8	46	89	2	192	29	25	22	22	1.99
39614270--39614392	62	2.0	62	98	0	237	33	21	9	35	1.86
39619358--39620317	46	20.8	46	95	1	1663	27	24	21	26	1.99
39624417--39624540	42	3.0	42	87	0	176	31	25	15	27	1.96
39624460--39624672	48	4.6	48	73	10	147	29	29	15	26	1.96
39624587--39624684	48	2.0	48	88	3	144	25	30	17	26	1.97
39629010--39629568	35	15.7	35	75	8	367	34	30	3	31	1.76
39629025--39629585	70	7.9	69	81	6	487	33	30	4	31	1.77
39629288--39629585	108	2.7	112	80	3	318	33	29	3	32	1.75
39629464--39629544	42	1.9	42	87	0	117	32	30	2	34	1.71
39629505--39629583	35	2.3	35	79	0	86	34	31	2	31	1.71
39629428--39629582	77	2.0	77	81	7	181	32	30	2	34	1.72
39630040--39630139	43	2.3	43	84	1	139	24	30	25	21	1.99
39631899--39631989	45	2.0	45	93	0	155	27	18	9	43	1.82
39634372--39634682	163	1.9	164	87	4	457	33	11	7	47	1.68
39634628--39634660	14	2.5	14	90	9	52	27	9	0	63	1.24
39636517--39636541	13	1.9	13	100	0	50	56	0	0	44	0.99
39638511--39638538	3	9.3	3	100	0	56	64	0	0	35	0.94
39643644--39643909	46	5.8	45	72	11	225	23	18	28	29	1.98
39643637--39643901	93	2.8	93	96	0	476	23	19	28	28	1.98
39643700--39643855	47	3.3	47	72	12	176	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39644585--39644610	10	2.6	10	100	0	52	65	7	0	26	1.20
39647075--39647202	10	13.8	10	68	23	59	34	3	0	61	1.14
39647098--39647141	17	2.6	18	89	7	65	31	6	0	61	1.22
39647098--39647148	17	2.9	18	82	5	52	35	7	0	56	1.28
39647069--39647220	9	16.6	9	72	15	98	33	3	0	61	1.19
39647078--39647230	19	8.3	18	74	13	107	33	4	0	62	1.16
39647145--39647236	10	9.7	9	82	16	55	34	4	0	60	1.16
39647253--39647325	32	2.3	32	88	4	103	52	5	4	38	1.44
39650897--39650980	26	3.2	26	94	0	141	34	4	23	36	1.76
39655578--39655634	29	1.9	30	92	3	98	54	14	5	26	1.61
39655669--39655711	22	2.0	22	85	0	59	55	9	13	20	1.66
39656893--39656932	19	2.1	19	95	0	71	60	5	10	25	1.49
39665662--39665741	42	1.9	42	94	0	142	31	2	16	50	1.58
39668500--39668545	23	2.0	24	86	4	67	65	0	17	17	1.28
39669345--39669387	22	2.0	22	82	13	54	13	27	6	51	1.67
39670708--39670744	19	1.9	19	94	0	65	37	16	5	40	1.71
39672796--39672830	17	2.1	17	100	0	70	11	5	22	60	1.52
39676140--39676202	31	2.0	31	96	0	117	33	12	11	42	1.78
39684863--39684909	23	2.0	23	87	0	67	29	4	10	55	1.53
39685106--39685138	17	1.9	17	93	0	57	27	6	9	57	1.53
39685529--39685553	13	1.9	13	100	0	50	44	8	0	48	1.32
39689643--39689757	29	4.0	29	82	2	126	29	13	27	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39695105--39696493	48	28.9	48	98	0	2283	34	4	29	31	1.78
39696626--39696802	37	4.8	37	92	0	291	24	18	31	25	1.98
39701132--39701394	40	6.6	39	86	4	278	25	27	21	25	1.99
39701132--39701394	120	2.2	119	82	4	307	25	27	21	25	1.99
39701326--39701403	40	1.9	41	82	10	97	26	28	20	24	1.99
39709115--39709377	40	6.6	40	87	3	309	26	28	20	23	1.99
39713008--39713041	8	4.2	8	88	0	50	41	29	11	17	1.85
39712989--39713037	16	3.1	16	87	0	62	46	28	6	18	1.72
39713196--39713238	16	2.7	16	92	7	70	53	20	20	4	1.63
39713196--39713238	8	5.4	8	77	0	50	53	20	20	4	1.63
39713347--39713389	18	2.3	19	84	8	61	20	20	41	16	1.90
39713355--39713390	18	2.0	18	94	0	63	22	19	38	19	1.93
39713476--39713543	29	2.4	29	85	2	84	27	17	26	27	1.98
39716443--39716518	38	2.0	38	86	0	107	26	26	13	34	1.93
39719224--39719256	10	3.3	10	91	0	57	42	9	0	48	1.35
39719340--39719382	14	3.1	14	74	12	52	39	4	0	55	1.20
39720278--39720633	131	2.7	131	83	3	439	30	17	17	33	1.94
39731199--39731243	12	3.6	13	77	16	51	55	0	4	40	1.20
39731617--39731645	9	3.2	9	100	0	58	62	0	13	24	1.32
39734768--39734987	39	5.6	39	92	1	352	28	28	23	19	1.98
39741252--39741486	39	6.0	39	90	2	287	32	29	20	17	1.95
39741252--39741486	78	3.0	78	88	3	321	32	29	20	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39741269--39741486	117	1.8	119	87	3	325	31	28	21	18	1.97
39747802--39747940	74	1.9	74	87	3	208	51	15	20	13	1.77
39749211--39749376	89	1.9	89	82	5	210	31	19	21	27	1.97
39748999--39749780	263	3.0	264	86	3	998	32	18	23	25	1.97
39751593--39751654	25	2.5	24	80	15	63	29	9	1	59	1.38
39751709--39751741	17	1.9	17	93	0	57	27	6	9	57	1.53
39757991--39758167	27	6.5	27	82	5	169	28	28	16	25	1.97
39758012--39758171	82	2.0	81	87	3	232	28	29	16	25	1.97
39766213--39766361	42	3.5	42	80	2	165	29	18	22	29	1.97
39767096--39767174	38	2.1	38	95	0	140	18	34	24	22	1.97
39779640--39779691	26	2.0	25	88	3	77	19	32	11	34	1.87
39781298--39781565	47	5.7	48	74	12	198	26	17	30	25	1.98
39784286--39784414	50	2.5	51	87	5	181	35	16	22	25	1.94
39784390--39784538	31	4.8	31	82	3	192	28	19	24	27	1.99
39784556--39784721	47	3.7	46	80	7	153	30	15	25	29	1.95
39784650--39784764	42	2.7	43	86	4	162	30	13	26	28	1.94
39786977--39787196	46	4.7	47	77	7	209	22	28	20	28	1.98
39786977--39787237	46	5.6	47	77	8	191	22	27	19	29	1.98
39790031--39790068	18	2.1	18	100	0	76	50	13	10	26	1.73
39792060--39792221	39	4.2	39	87	1	236	21	20	29	28	1.98
39792060--39792221	77	2.1	78	90	1	254	21	20	29	28	1.98
39792205--39792279	39	1.9	39	81	5	89	21	22	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39795773--39795855	42	2.0	42	92	0	139	34	14	20	30	1.92
39801442--39801493	27	2.0	26	84	3	68	17	26	21	34	1.95
39805243--39805426	79	2.3	82	81	11	215	25	27	21	26	2.00
39805243--39805426	40	4.6	41	83	12	190	25	27	21	26	2.00
39808119--39808326	69	3.0	69	100	0	416	27	18	21	31	1.97
39814391--39814575	40	4.7	40	82	7	209	24	22	27	25	2.00
39814444--39814608	79	2.1	79	83	6	201	26	21	27	25	1.99
39820029--39820063	13	2.7	13	95	0	61	20	60	14	5	1.54
39829597--39829782	80	2.3	82	88	3	281	25	27	22	25	2.00
39829578--39829782	40	5.1	40	82	7	229	24	27	21	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186