genome.fa.s20.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  73  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23486754--23486779	13	2.0	13	100	0	52	15	15	15	53	1.73
23488607--23488643	18	2.0	19	85	15	51	32	16	2	48	1.60
23491723--23491806	22	3.7	22	69	17	64	40	11	22	25	1.88
23491745--23491816	22	3.0	25	66	22	73	38	12	23	25	1.90
23491725--23491816	46	2.0	46	97	0	175	39	10	22	27	1.87
23492057--23492217	84	1.9	84	97	0	304	40	6	32	19	1.78
23495881--23495942	31	2.0	31	100	0	124	58	6	3	32	1.40
23499819--23499930	35	3.2	35	87	6	174	61	2	27	8	1.38
23499821--23499927	33	3.2	33	90	2	151	61	2	27	8	1.39
23513653--23513678	6	4.3	6	100	0	52	0	15	0	84	0.62
23515701--23515998	40	7.5	40	94	1	476	22	23	28	25	1.99
23523645--23523907	40	6.6	40	88	3	316	24	20	28	26	1.99
23523684--23523942	80	3.3	80	84	3	247	25	20	28	25	1.99
23526288--23526321	16	2.1	17	88	5	52	11	0	11	76	1.02
23528623--23528774	38	4.0	38	98	0	286	31	13	23	31	1.93
23529615--23529734	40	3.0	40	85	6	152	25	24	25	24	2.00
23538537--23538681	40	3.6	39	83	6	164	25	23	26	24	2.00
23546372--23546423	25	2.1	25	100	0	104	48	5	11	34	1.63
23547506--23547638	66	2.0	66	100	0	266	28	13	13	44	1.82
23553209--23553288	15	5.4	15	77	7	83	10	18	13	57	1.64
23553200--23553287	30	3.0	30	80	11	92	10	18	15	55	1.68
23555679--23555854	46	3.8	46	80	12	225	21	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23555676--23555846	93	1.8	93	96	0	315	21	21	29	28	1.98
23564603--23564645	22	2.0	22	90	0	68	23	11	18	46	1.82
23569359--23569450	42	2.2	42	84	7	116	22	31	18	27	1.97
23583409--23583443	11	3.1	11	91	4	52	82	0	14	2	0.77
23583407--23583435	6	4.8	6	100	0	58	82	0	17	0	0.66
23584090--23584120	5	6.0	5	96	3	53	77	0	0	22	0.77
23584781--23584832	19	2.7	20	96	3	97	23	11	15	50	1.76
23585221--23585339	46	2.6	46	90	0	184	42	22	9	25	1.83
23586293--23586353	32	1.9	32	86	6	88	50	16	4	27	1.65
23589923--23589992	28	2.5	28	90	4	106	27	12	27	32	1.93
23597379--23597432	15	3.7	15	75	20	51	7	12	18	61	1.54
23599892--23600033	49	2.9	49	83	6	189	26	20	26	27	1.99
23603719--23603762	19	2.4	19	85	7	56	50	0	9	40	1.34
23606119--23606166	20	2.5	20	78	18	57	29	18	25	27	1.98
23606157--23606295	60	2.3	59	82	6	154	29	20	23	26	1.99
23608369--23608419	14	3.8	13	77	15	50	39	9	1	49	1.47
23610855--23610971	48	2.5	46	79	10	112	35	23	17	23	1.95
23613516--23613606	44	2.1	44	97	0	173	19	21	28	29	1.98
23614793--23614901	20	5.4	20	80	4	80	39	17	7	35	1.78
23615088--23615242	23	6.9	23	70	18	78	34	16	21	26	1.95
23615075--23615161	23	3.6	25	76	16	87	29	17	24	28	1.97
23615101--23615194	22	4.4	21	76	18	88	32	19	21	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23615140--23615176	18	2.1	18	94	0	65	35	24	13	27	1.93
23615103--23615206	22	4.9	22	77	16	78	33	19	21	25	1.97
23615187--23615270	24	3.5	23	70	14	71	34	16	22	26	1.95
23618528--23618691	42	3.8	42	77	3	166	28	17	23	31	1.97
23622707--23622744	19	2.0	19	85	10	51	42	0	15	42	1.47
23622902--23622958	29	2.0	29	89	6	89	43	0	3	52	1.18
23623017--23623088	33	2.2	32	88	11	103	40	0	6	52	1.28
23623141--23623185	23	2.0	22	82	4	54	33	0	11	55	1.35
23623391--23623425	18	1.9	18	88	0	52	82	5	2	8	0.91
23624072--23624102	15	2.1	15	100	0	62	25	0	12	61	1.32
23625198--23625250	26	2.0	27	85	7	74	24	15	22	37	1.92
23626733--23626797	32	2.0	32	100	0	130	38	24	6	30	1.80
23627122--23627184	28	2.2	29	81	13	69	39	1	20	38	1.62
23630178--23630237	31	1.9	31	82	0	75	43	5	21	30	1.74
23633049--23633089	20	2.0	20	85	0	55	41	4	2	51	1.36
23637255--23637295	19	2.2	19	86	8	57	29	21	7	41	1.80
23640639--23640677	20	2.1	19	90	9	62	58	5	5	30	1.41
23640908--23640994	27	3.1	28	75	11	72	74	3	3	18	1.10
23640900--23641000	36	2.8	35	76	18	102	73	2	3	19	1.13
23640900--23640986	18	4.9	18	75	17	67	72	3	3	20	1.14
23640908--23641002	17	5.7	16	68	24	54	74	3	4	17	1.11
23641090--23641136	20	2.3	20	86	13	62	70	0	6	23	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23641188--23641214	14	1.9	14	100	0	54	55	0	0	44	0.99
23641193--23641332	37	3.9	37	76	10	114	55	2	1	40	1.23
23641298--23641386	21	4.0	21	70	22	67	56	3	1	39	1.23
23641293--23641386	22	4.2	22	70	17	70	57	3	1	38	1.22
23641382--23641447	17	3.7	17	76	11	62	78	4	4	12	1.05
23641484--23641540	25	2.3	25	96	0	105	75	0	14	10	1.05
23645265--23645371	56	1.9	55	94	1	187	42	11	8	38	1.71
23647781--23647957	46	3.8	46	73	13	130	28	19	28	23	1.99
23655495--23655669	47	3.7	47	83	10	200	26	16	31	25	1.96
23665173--23665198	13	2.0	13	100	0	52	30	30	0	38	1.58
23665157--23665191	17	2.1	17	88	0	52	25	28	0	45	1.54
23668343--23668369	14	1.9	14	100	0	54	29	14	18	37	1.91
23668560--23668623	31	2.1	31	100	0	128	40	0	21	37	1.54
23670174--23670256	40	2.1	40	83	0	103	24	16	28	30	1.97
23670250--23670338	28	3.2	27	73	7	81	34	8	23	32	1.86
23673136--23673171	16	2.3	16	85	4	56	27	0	8	63	1.23
23674841--23674897	29	2.0	29	96	0	105	12	29	14	43	1.81
23678097--23678205	54	2.0	54	100	0	218	25	9	39	25	1.85
23678751--23678829	40	2.0	40	97	0	149	21	27	15	35	1.93
23684570--23685104	273	2.0	271	95	0	971	26	19	23	30	1.98
23690970--23691158	50	3.7	50	80	3	173	25	16	25	32	1.96
23691032--23691251	51	4.3	51	81	1	183	26	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23702901--23703015	40	2.9	41	90	2	180	24	23	28	23	1.99
23714024--23714064	11	4.0	10	87	12	57	78	0	0	21	0.76
23714024--23714077	14	3.9	14	79	18	51	77	1	0	20	0.86
23714024--23714077	24	2.2	24	84	12	67	77	1	0	20	0.86
23720229--23720289	30	2.0	30	100	0	122	37	19	13	29	1.90
23721798--23721843	18	2.6	18	82	6	58	13	26	34	26	1.92
23724093--23724120	12	2.3	12	100	0	56	75	0	0	25	0.81
23730550--23730767	49	4.6	49	69	10	130	23	27	19	29	1.98
23734856--23734881	13	2.0	13	100	0	52	0	38	23	38	1.55
23735867--23736170	46	6.6	44	79	10	274	22	29	20	27	1.98
23735818--23736171	92	3.8	89	79	10	311	23	29	20	27	1.98
23735818--23736168	138	2.5	138	88	3	510	23	29	19	27	1.98
23736887--23736911	12	2.1	12	100	0	50	60	16	8	16	1.58
23739377--23739437	26	2.3	27	83	13	83	39	27	8	24	1.84
23739548--23739648	27	3.7	28	89	2	145	21	25	18	33	1.97
23763595--23763649	27	2.0	27	82	0	65	14	27	34	23	1.94
23768568--23768599	5	6.4	5	100	0	64	21	0	0	78	0.76
23769703--23769857	57	2.7	58	78	5	161	30	16	21	30	1.96
23772849--23772907	30	2.0	30	93	0	100	35	16	10	37	1.83
23780019--23780120	46	2.2	46	100	0	204	27	25	23	23	2.00
23784621--23784648	14	2.0	14	100	0	56	64	7	7	21	1.43
23784874--23784900	9	3.0	9	100	0	54	55	22	0	22	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23788870--23788910	20	2.0	20	100	0	82	9	31	34	24	1.88
23790944--23791038	47	2.0	47	97	0	181	34	4	15	45	1.66
23791037--23791139	51	2.0	51	94	0	179	33	8	20	37	1.83
23795448--23795577	47	2.8	47	84	0	170	33	16	25	24	1.96
23797965--23798029	30	2.1	30	81	13	71	49	6	4	40	1.48
23800661--23800715	24	2.3	24	84	6	67	32	12	23	30	1.92
23800856--23800939	13	6.5	13	83	0	78	33	26	14	26	1.94
23800858--23800933	39	1.9	39	89	0	116	31	23	15	28	1.96
23800858--23800939	26	3.2	26	85	0	101	32	25	14	26	1.95
23807867--23807941	38	2.0	38	86	5	107	30	18	26	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186