genome.fa.s20.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  113  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37353146--37353176	12	2.6	12	94	0	53	74	0	25	0	0.82
37354311--37354351	18	2.3	18	87	8	57	48	0	21	29	1.50
37354839--37354876	20	1.9	20	84	10	51	47	0	10	42	1.38
37357053--37357213	38	4.2	38	90	3	252	19	22	25	31	1.98
37357206--37357319	46	2.6	44	84	8	135	23	23	27	25	2.00
37358392--37358423	3	10.7	3	100	0	64	31	0	0	68	0.90
37365647--37365840	96	2.0	96	98	0	379	41	6	15	36	1.73
37379362--37379421	21	2.9	21	89	0	84	41	23	11	23	1.87
37387204--37387274	3	23.7	3	74	16	58	61	4	1	32	1.23
37387204--37387273	27	2.6	27	75	11	79	62	4	1	31	1.23
37388916--37388954	20	2.0	20	95	5	71	51	2	5	41	1.38
37396820--37396926	44	2.4	44	87	3	142	28	23	14	33	1.93
37403461--37403527	34	1.9	35	90	3	109	32	8	13	44	1.75
37405118--37405163	21	2.2	21	88	3	67	28	28	4	39	1.76
37405340--37405406	21	3.2	21	93	0	107	44	17	22	14	1.86
37427574--37427800	44	5.2	43	74	4	184	27	25	17	29	1.98
37439178--37439378	101	2.0	101	99	0	393	37	22	15	23	1.93
37448525--37448574	26	1.9	26	84	8	66	20	10	0	70	1.16
37459202--37459236	17	2.1	17	100	0	70	54	5	22	17	1.64
37462474--37462531	29	2.0	29	100	0	116	37	0	13	48	1.43
37476732--37477107	173	2.2	175	88	3	544	25	26	20	28	1.99
37476592--37477240	44	14.8	44	69	11	303	25	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37476487--37476927	129	3.4	129	82	5	546	26	25	19	27	1.99
37476874--37477332	132	3.5	132	85	2	609	26	26	19	28	1.99
37476599--37477240	305	2.1	307	90	0	1018	25	26	20	28	1.99
37479068--37479160	47	2.0	48	86	2	134	20	26	15	37	1.92
37505145--37505195	24	2.1	24	85	7	68	9	23	13	52	1.70
37505159--37505205	24	2.0	24	82	0	58	10	29	10	48	1.71
37509062--37509101	17	2.4	16	88	12	62	72	0	0	27	0.85
37509065--37509104	22	1.9	20	85	10	53	72	0	0	27	0.85
37513708--37513740	3	11.0	3	100	0	66	66	0	0	33	0.92
37517557--37518067	49	10.6	49	94	2	849	33	8	30	28	1.86
37526077--37526132	27	2.1	27	86	6	78	37	14	23	25	1.92
37528578--37528712	56	2.4	56	97	0	252	33	23	15	27	1.95
37534525--37534595	13	5.5	13	87	0	106	38	28	8	25	1.85
37548464--37548521	29	2.0	28	86	3	80	39	5	3	51	1.41
37548658--37548735	14	5.4	14	68	20	54	17	10	0	71	1.12
37552316--37552360	19	2.4	19	85	7	56	31	24	8	35	1.86
37555812--37555890	37	2.1	37	88	0	113	25	30	18	25	1.98
37556009--37556508	49	10.3	49	95	1	882	31	29	7	32	1.84
37564999--37565278	44	6.3	44	69	10	171	29	19	25	25	1.98
37565353--37565511	44	3.6	44	79	7	178	27	13	28	30	1.94
37564952--37565541	177	3.3	175	79	10	619	28	19	25	26	1.98
37576728--37577169	224	2.0	224	90	0	706	28	12	23	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37589709--37589766	24	2.5	23	81	16	66	62	0	5	32	1.18
37590037--37590194	49	3.2	48	95	2	273	31	7	31	30	1.85
37590312--37590390	37	2.1	37	88	0	113	25	18	30	25	1.98
37595674--37595793	38	3.1	38	84	4	143	29	23	24	23	1.99
37598245--37598464	48	4.6	48	77	13	204	25	20	30	23	1.98
37598248--37598608	96	3.8	95	78	9	269	25	20	30	23	1.99
37598398--37598605	89	2.2	92	82	5	251	25	19	30	24	1.98
37598245--37598601	137	2.5	140	79	6	350	25	20	29	23	1.99
37607502--37607576	37	2.0	37	92	0	123	20	38	21	20	1.93
37610806--37610981	46	3.8	46	81	7	169	28	19	28	23	1.98
37613646--37613797	27	5.6	27	92	3	232	27	13	28	30	1.94
37613646--37613797	55	2.8	55	92	0	241	27	13	28	30	1.94
37618867--37618995	24	5.3	24	72	10	75	31	18	23	26	1.97
37623568--37623650	37	2.2	37	84	0	103	38	16	3	40	1.66
37627324--37627429	42	2.5	43	77	10	119	24	18	26	30	1.98
37634455--37634572	43	2.8	42	75	6	121	23	16	26	33	1.96
37636518--37636570	24	2.1	24	86	6	70	47	22	0	30	1.52
37640822--37640893	6	11.8	6	77	14	76	50	13	18	18	1.79
37640801--37640868	18	3.8	18	80	7	75	51	14	16	17	1.77
37640822--37640893	31	2.4	30	90	2	108	50	13	18	18	1.79
37641011--37641084	27	2.8	27	74	13	73	36	22	22	17	1.95
37641395--37641477	27	3.1	26	89	5	121	36	21	22	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37641676--37641863	27	7.0	27	86	0	232	25	20	19	35	1.96
37641676--37641871	54	3.6	54	85	2	259	25	19	18	35	1.95
37641880--37642421	27	20.1	27	81	4	560	40	8	22	28	1.83
37644463--37644557	47	2.0	47	100	0	190	24	14	16	44	1.86
37646578--37646627	26	1.9	26	95	0	91	42	8	12	38	1.71
37650743--37650792	26	1.9	26	95	0	91	42	6	12	40	1.67
37653213--37653835	313	2.0	313	99	0	1219	33	17	16	32	1.92
37661520--37662021	251	2.0	251	99	0	986	24	20	13	42	1.88
37663251--37663346	31	3.1	31	95	3	174	31	9	13	45	1.75
37670940--37671031	39	2.3	39	88	5	132	25	28	22	23	2.00
37670921--37671084	40	4.1	40	78	10	167	24	28	23	24	2.00
37675512--37675752	119	2.0	119	99	0	473	27	27	19	25	1.99
37679227--37679530	40	7.7	40	86	4	393	25	27	22	25	2.00
37679227--37679530	79	3.8	79	91	3	434	25	27	22	25	2.00
37679227--37679530	119	2.6	119	86	4	409	25	27	22	25	2.00
37686654--37686760	56	1.9	55	98	1	205	22	19	33	24	1.97
37687164--37687340	40	4.5	40	81	8	184	25	27	21	25	1.99
37689467--37689618	38	3.9	38	85	6	173	21	21	25	31	1.98
37689909--37690262	177	2.0	177	99	0	699	31	9	17	41	1.81
37691232--37691336	47	2.2	47	86	5	140	12	26	9	51	1.70
37698353--37698443	26	3.6	26	91	2	125	27	26	21	24	1.99
37698377--37698461	26	3.4	26	81	12	72	28	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37698668--37698751	31	2.7	31	94	1	143	33	17	25	23	1.97
37700437--37700603	43	3.9	42	79	4	156	26	13	26	34	1.93
37708813--37708889	23	3.3	23	81	5	84	19	20	19	40	1.92
37709030--37709073	20	2.2	20	83	0	52	27	4	29	38	1.76
37718239--37718265	13	2.1	13	100	0	54	14	33	37	14	1.88
37725779--37725821	21	2.0	21	100	0	86	9	18	23	48	1.76
37733081--37733141	30	2.0	30	83	0	77	31	22	8	37	1.84
37736806--37737096	27	10.7	27	83	5	347	26	12	21	40	1.88
37736807--37737077	136	2.0	136	89	4	413	25	12	21	40	1.87
37737029--37737108	27	3.0	27	81	9	83	27	13	20	38	1.90
37737434--37737483	18	2.8	18	90	0	73	28	24	8	40	1.83
37738617--37738646	15	2.0	15	100	0	60	26	26	6	40	1.81
37742033--37742157	59	2.1	59	93	0	214	34	7	21	36	1.81
37745785--37746321	266	2.0	267	98	0	1040	35	15	16	32	1.90
37750184--37750218	17	2.0	18	88	5	54	17	31	34	17	1.93
37750334--37750481	27	5.5	27	84	0	170	27	12	20	39	1.88
37750334--37750502	27	6.3	26	83	1	131	28	12	20	38	1.89
37753969--37754244	107	2.6	108	81	1	302	25	13	20	40	1.89
37753969--37754244	27	10.3	27	84	0	284	25	13	20	40	1.89
37753967--37754241	134	2.0	135	85	1	363	25	12	20	41	1.88
37754569--37754618	18	2.8	18	84	0	64	28	16	10	46	1.78
37754842--37754872	16	1.9	16	93	0	53	16	9	6	67	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37756834--37756858	13	1.9	13	100	0	50	0	40	4	56	1.18
37757716--37758033	27	11.8	27	83	3	363	24	13	21	40	1.89
37757716--37758017	80	3.8	80	88	5	421	24	12	21	40	1.88
37761456--37761653	27	7.3	27	90	1	272	27	14	17	40	1.88
37761991--37762057	18	3.7	18	76	4	55	28	16	10	44	1.80
37764899--37764953	23	2.4	23	78	3	58	23	18	16	41	1.89
37771373--37771591	45	5.0	44	88	6	311	23	21	30	24	1.99
37771372--37771591	88	2.5	88	90	5	338	24	21	30	24	1.99
37774025--37774194	93	1.8	92	89	3	270	22	21	27	28	1.99
37774032--37774202	46	3.7	45	74	14	161	23	20	26	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186