Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  186  of  186  ( 22216 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61657307--61657337
16
1.9
16
100
0
62
83
0
0
16
0.64
61665443--61666406
39
24.6
40
97
1
931
23
28
23
25
2.00
61665443--61666406
78
12.3
78
98
1
1790
23
28
23
25
2.00
61665443--61666406
117
8.2
117
98
1
1790
23
28
23
25
2.00
61671680--61671995
158
2.0
158
100
0
632
22
31
21
25
1.98
61672431--61672526
48
2.0
48
97
0
183
26
22
26
25
2.00
61674355--61674538
39
4.7
40
83
7
207
25
28
21
24
1.99
61682924--61683014
46
2.0
46
91
0
146
27
30
7
34
1.85
61683033--61683324
47
6.2
47
95
2
496
24
26
13
35
1.92
61692254--61692290
19
1.9
19
94
0
65
16
24
27
32
1.96
61704336--61704554
20
10.9
20
70
0
87
18
18
21
41
1.91
61704339--61704535
60
3.3
60
81
0
232
18
18
21
41
1.91
61708867--61708977
55
2.0
55
98
0
213
36
13
23
26
1.92
61715780--61715899
48
2.6
46
85
2
150
29
23
12
35
1.91
61721725--61721843
48
2.5
47
81
4
141
28
21
14
36
1.92
61725463--61725508
24
2.0
23
83
12
58
30
17
8
43
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186

The End!