genome.fa.s20.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  46  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13866049--13866139	24	3.8	23	81	11	103	34	18	21	25	1.96
13872388--13872429	21	2.0	21	81	9	50	54	0	7	38	1.28
13875818--13875866	18	2.7	18	80	0	53	4	14	8	73	1.21
13875892--13875935	5	8.8	5	100	0	88	59	0	0	40	0.98
13881991--13882156	27	6.1	27	87	0	242	27	25	7	39	1.83
13881991--13882156	81	2.0	81	95	0	296	27	25	7	39	1.83
13881991--13882198	27	7.7	27	82	0	229	28	23	8	39	1.84
13882005--13882188	81	2.3	81	89	0	269	28	23	7	40	1.82
13882192--13882343	27	5.6	27	82	3	146	42	21	8	27	1.82
13882217--13882371	27	5.7	27	84	3	154	41	21	7	29	1.80
13882219--13882369	81	1.9	81	85	2	214	42	21	7	28	1.81
13882192--13882371	54	3.3	55	78	6	181	42	21	7	28	1.80
13882300--13882423	27	4.5	27	77	11	108	45	17	6	30	1.74
13882348--13882433	27	3.1	27	79	14	86	40	13	10	34	1.80
13882487--13882563	27	2.9	28	81	11	90	33	18	23	24	1.96
13883297--13883327	16	1.9	16	93	0	53	32	19	12	35	1.90
13883360--13883429	25	2.8	24	89	4	95	25	27	22	24	2.00
13883360--13883442	25	3.4	24	85	8	87	28	24	22	24	1.99
13883577--13883667	41	2.2	42	96	2	166	30	15	20	32	1.94
13883691--13883774	31	2.7	31	87	1	125	29	17	23	28	1.97
13885193--13885219	5	5.4	5	100	0	54	59	0	0	40	0.98
13889357--13889420	29	2.1	32	85	8	89	35	0	9	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13893756--13893844	46	2.0	45	88	4	135	29	25	12	32	1.92
13899658--13899765	44	2.4	44	87	3	144	29	23	13	33	1.93
13904125--13904164	21	1.9	21	89	0	62	15	30	25	30	1.95
13907340--13907376	6	6.2	6	100	0	74	32	0	32	35	1.58
13907575--13907633	31	1.9	30	83	10	75	30	15	5	49	1.66
13908896--13908955	28	2.1	30	87	6	88	26	3	11	58	1.49
13921716--13921756	1	41.0	1	95	0	73	97	0	2	0	0.17
13921788--13921824	14	2.6	14	91	0	65	91	0	8	0	0.41
13921788--13921827	16	2.7	16	85	14	59	90	0	10	0	0.47
13929889--13930020	65	2.0	65	98	0	255	23	24	22	29	1.99
13930727--13930792	22	3.0	22	95	0	114	39	19	15	25	1.91
13938008--13938045	17	2.3	17	86	4	51	63	5	23	7	1.42
13945540--13945723	67	2.8	64	76	8	185	29	16	29	23	1.96
13950347--13950411	30	2.2	30	97	0	121	40	23	9	27	1.85
13954475--13954500	13	2.0	13	100	0	52	23	0	0	76	0.78
13956340--13956384	20	2.3	20	81	14	58	26	15	28	28	1.96
13958890--13958936	23	2.0	23	95	0	85	27	8	19	44	1.79
13961037--13961165	65	2.0	65	98	0	249	34	22	14	28	1.94
13961478--13961516	14	2.8	14	100	0	78	58	12	7	20	1.58
13966354--13966409	20	2.8	20	91	2	85	58	0	3	37	1.15
13968836--13968892	24	2.4	24	79	5	71	49	3	3	43	1.36
13968900--13968950	23	2.1	25	82	10	61	45	9	0	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13971949--13971992	19	2.3	19	84	4	52	50	6	4	38	1.50
13973760--13973893	35	3.7	36	79	10	148	34	23	10	31	1.89
13973756--13973893	75	1.9	74	86	6	199	34	23	10	31	1.89
13975424--13975479	21	2.7	21	73	26	57	46	5	1	46	1.36
13980808--13980834	13	2.1	13	100	0	54	51	18	7	22	1.70
13982344--13982426	42	2.0	41	92	2	139	21	6	14	57	1.58
13983647--13983783	37	3.5	39	76	10	136	35	22	16	25	1.95
13987903--13987980	40	2.0	40	87	5	113	37	32	14	16	1.89
13994008--13994047	21	1.9	21	84	0	53	37	0	17	45	1.49
13994365--13994579	25	8.7	25	74	10	167	17	26	21	34	1.96
13994365--13994579	73	2.9	73	78	9	179	17	26	21	34	1.96
14001814--14001854	21	2.0	21	90	0	64	26	41	7	24	1.81
14004451--14004487	12	3.1	12	88	0	56	45	18	27	8	1.77
14012137--14012263	64	2.0	64	92	3	211	30	18	15	35	1.92
14012453--14012540	45	2.0	45	86	4	124	32	18	20	28	1.96
14012554--14012664	45	2.5	45	93	0	186	29	19	22	27	1.98
14012377--14013052	223	3.0	221	81	8	684	29	19	21	29	1.97
14012854--14012964	45	2.5	45	80	10	131	32	18	21	27	1.97
14012595--14013033	134	3.3	133	80	5	528	29	18	22	29	1.97
14012911--14013104	88	2.2	88	87	1	273	27	20	19	32	1.97
14015293--14015570	124	2.2	124	83	4	337	25	16	20	37	1.94
14016108--14016216	43	2.6	42	78	8	121	33	24	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14016105--14016259	42	3.7	41	77	8	150	32	23	13	30	1.93
14017971--14018035	29	2.3	29	86	7	89	40	24	15	20	1.91
14017985--14018262	29	9.9	29	78	6	198	37	20	16	25	1.93
14017971--14018211	86	2.8	86	80	5	247	38	21	15	24	1.92
14017981--14018218	29	8.3	28	79	4	206	37	21	15	26	1.92
14017981--14018214	57	4.1	57	80	1	243	37	21	15	25	1.93
14018199--14018262	26	2.5	26	84	0	83	32	23	18	25	1.97
14024160--14024299	40	3.4	40	74	7	120	30	14	24	30	1.94
14024160--14024317	84	1.9	80	82	7	192	29	14	23	32	1.94
14056498--14056532	15	2.3	15	100	0	70	74	0	0	25	0.82
14062104--14062269	43	3.9	42	80	9	167	33	24	14	28	1.94
14078763--14079025	39	6.7	40	85	6	299	24	22	26	26	2.00
14078764--14079058	78	3.7	79	80	8	228	25	21	27	25	1.99
14084578--14084850	27	10.1	27	85	1	269	35	18	19	26	1.95
14084588--14084870	81	3.5	80	79	7	297	34	17	21	26	1.95
14085017--14085082	27	2.5	26	80	9	71	18	24	24	33	1.97
14085120--14085269	32	4.7	32	81	11	166	19	21	23	36	1.95
14085286--14085327	22	1.9	22	85	0	57	23	19	11	45	1.83
14090374--14090420	21	2.2	22	92	3	78	21	19	38	21	1.94
14092750--14092782	17	2.0	17	88	5	50	21	0	18	60	1.36
14093102--14093131	4	7.2	4	96	3	51	73	0	0	26	0.84
14114778--14114821	14	3.1	15	90	6	65	65	4	29	0	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14119480--14119643	29	5.6	29	78	9	165	37	13	26	21	1.91
14119459--14119643	58	3.2	57	81	9	205	38	12	26	22	1.90
14119590--14119656	29	2.3	30	76	2	73	37	17	25	19	1.94
14129314--14129361	24	2.0	24	84	8	62	47	14	2	35	1.56
14135072--14135126	22	2.5	22	96	0	101	10	3	25	60	1.47
14136236--14136285	24	2.1	24	100	0	100	20	20	22	38	1.94
14144734--14144774	17	2.6	15	82	14	55	17	7	2	73	1.17
14146372--14146404	13	2.5	13	95	0	57	27	0	39	33	1.57
14152611--14152651	14	2.8	15	85	10	50	31	9	2	56	1.45
14152627--14152669	15	2.9	15	85	0	50	25	13	2	58	1.48
14162259--14162297	11	3.5	11	78	0	51	58	20	12	7	1.58
14162261--14162308	21	2.2	22	92	3	80	62	22	8	6	1.46
14169229--14169266	13	2.7	14	84	12	51	52	0	7	39	1.31
14176455--14176622	50	3.2	50	77	13	135	25	27	19	28	1.98
14178262--14178297	18	1.9	19	88	5	56	27	41	13	16	1.87
14179007--14179086	40	2.0	40	95	0	142	15	20	15	50	1.79
14183081--14183125	20	2.2	20	88	0	72	51	13	6	28	1.66
14183200--14183256	21	2.8	21	94	2	98	45	14	14	26	1.82
14187446--14187485	21	1.9	21	84	0	53	55	0	5	40	1.22
14188659--14188705	21	2.2	22	92	3	78	21	38	19	21	1.94
14192028--14192351	59	5.5	59	100	0	648	39	11	14	34	1.83
14192873--14192905	15	2.1	16	94	5	59	0	15	0	84	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14195276--14195309	18	1.9	17	94	5	59	88	0	11	0	0.52
14196470--14196497	3	9.3	3	100	0	56	32	0	0	67	0.91
14197717--14197790	11	7.0	11	71	17	50	56	5	2	35	1.36
14197718--14197797	18	4.6	18	72	17	60	57	6	2	33	1.37
14199273--14199427	3	50.7	3	67	13	57	27	7	5	59	1.47
14199238--14199303	23	3.0	21	78	12	69	28	6	6	59	1.46
14200104--14200264	80	2.0	80	100	0	322	27	11	12	49	1.74
14205202--14205247	2	23.0	2	100	0	92	50	0	50	0	1.00
14205970--14206004	17	2.1	17	100	0	70	37	22	11	28	1.89
14207381--14207428	15	3.1	15	81	6	51	79	8	2	10	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186