genome.fa.s20.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  165  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54916415--54916483	35	2.0	35	83	11	88	37	1	4	56	1.28
54926133--54926173	18	2.3	18	87	4	57	51	2	0	46	1.14
54926145--54926183	18	2.2	17	90	4	60	38	2	0	58	1.12
54926256--54926294	19	2.1	19	85	4	53	66	5	5	23	1.32
54926331--54926365	18	2.1	17	89	10	54	60	5	0	34	1.21
54931620--54931748	50	2.6	50	87	0	186	28	19	24	27	1.98
54931620--54931772	50	3.1	49	84	3	155	26	20	23	29	1.99
54934394--54934654	95	2.8	94	83	7	309	27	19	29	24	1.98
54934394--54934666	47	5.8	46	74	8	212	26	19	29	24	1.98
54937922--54938071	50	3.0	49	87	1	203	26	21	26	26	1.99
54940761--54940868	22	4.9	22	80	4	119	25	24	22	28	1.99
54940746--54940868	45	2.8	44	78	5	122	25	22	21	30	1.98
54949894--54949962	35	2.0	35	97	0	129	27	5	37	28	1.80
54954665--54954719	25	2.2	26	78	21	64	40	5	0	54	1.23
54968137--54968276	39	3.6	39	90	0	208	39	25	23	12	1.89
54972281--54972451	93	1.8	93	96	0	315	28	28	21	21	1.99
54972276--54972448	46	3.7	46	78	13	210	28	27	21	21	1.99
54977321--54977425	40	2.6	41	79	8	117	23	23	28	23	2.00
54984580--54984657	33	2.3	35	91	8	135	33	19	20	26	1.96
54985303--54985448	40	3.7	40	83	7	172	23	21	27	26	1.99
54985303--54985481	80	2.2	80	80	6	186	25	21	26	26	1.99
54988127--54988277	37	4.1	37	92	0	221	27	30	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54988444--54988713	47	5.7	47	91	0	432	26	28	12	32	1.92
54988481--54988556	24	3.3	22	66	28	59	26	30	13	30	1.94
54988622--54988697	22	3.3	22	67	22	66	25	30	13	31	1.93
55005166--55005214	23	2.1	23	96	0	89	44	16	6	32	1.72
55005596--55005654	29	2.0	29	90	0	91	28	5	13	52	1.61
55008414--55008452	16	2.4	16	95	0	69	38	23	0	38	1.55
55015906--55015963	30	1.9	30	92	0	98	31	29	6	32	1.84
55019947--55019986	21	2.0	20	90	5	62	42	22	0	35	1.54
55049020--55049122	40	2.6	40	84	3	127	27	15	23	33	1.95
55053855--55053912	30	2.0	29	83	10	73	32	18	3	44	1.67
55057018--55057065	22	2.2	22	96	0	87	29	10	14	45	1.78
55059219--55059294	34	2.2	34	80	0	80	22	23	23	30	1.99
55074314--55074394	34	2.4	34	81	2	92	29	22	19	28	1.98
55079823--55080005	41	4.5	40	89	2	134	35	18	22	22	1.96
55079846--55080024	41	4.4	41	92	0	279	37	18	22	21	1.94
55080098--55080141	21	2.0	22	91	4	72	18	0	38	43	1.50
55080130--55080156	7	3.9	7	100	0	54	14	0	55	29	1.40
55080378--55080421	21	2.1	21	91	0	70	29	2	34	34	1.70
55082726--55082755	14	2.2	13	94	5	51	50	0	13	36	1.42
55082826--55083200	183	2.0	183	95	0	669	27	15	14	42	1.86
55083396--55083424	15	1.9	15	100	0	58	24	6	20	48	1.74
55083735--55083862	65	2.0	65	95	0	229	30	21	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55084465--55084520	15	3.8	15	77	20	64	46	1	0	51	1.11
55084624--55084690	9	7.6	9	74	3	55	49	13	2	34	1.57
55084658--55084775	17	6.4	17	67	18	65	48	9	1	40	1.45
55084593--55084751	87	1.8	87	87	0	237	47	11	2	38	1.54
55090002--55090030	14	2.1	14	93	6	51	34	0	6	58	1.25
55090442--55090500	21	2.8	21	92	0	91	27	18	54	0	1.44
55090857--55090950	43	2.2	43	82	3	109	22	23	27	26	1.99
55090880--55090967	43	2.1	42	91	2	140	23	27	20	28	1.99
55098310--55098343	10	3.4	10	100	0	68	41	20	8	29	1.82
55098899--55098982	40	2.1	40	82	10	100	34	25	14	26	1.94
55099794--55099835	22	1.9	22	100	0	84	47	14	4	33	1.65
55103499--55103552	28	2.0	28	88	3	83	44	7	0	48	1.31
55110397--55110447	25	2.0	25	92	0	84	29	25	13	31	1.94
55112367--55112396	14	2.1	14	100	0	60	40	6	0	53	1.27
55112559--55113059	102	5.0	101	85	6	587	29	1	14	53	1.49
55113023--55113057	15	2.3	15	86	13	54	28	0	5	65	1.15
55113024--55113057	16	2.2	15	94	5	59	26	0	5	67	1.13
55115263--55115434	74	2.4	72	86	8	235	28	7	12	51	1.67
55118742--55118790	25	2.0	25	95	0	89	24	30	6	38	1.80
55121331--55121409	39	2.0	39	95	0	140	34	8	10	46	1.69
55124772--55124807	18	2.0	18	100	0	72	22	22	27	27	1.99
55124792--55124833	21	2.0	21	100	0	84	19	33	23	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55124722--55124879	40	4.0	40	73	23	161	27	29	20	22	1.99
55140759--55140864	44	2.4	42	76	7	104	29	16	24	29	1.97
55151813--55151940	43	3.0	43	77	11	136	24	18	27	29	1.98
55151828--55151935	44	2.5	44	76	16	116	25	20	26	27	1.99
55161935--55161974	21	2.0	20	85	14	55	30	22	12	35	1.91
55164298--55164336	18	2.2	18	86	9	53	61	0	7	30	1.24
55173542--55173584	21	2.0	21	100	0	86	32	0	23	44	1.54
55175240--55175381	41	3.5	40	76	11	137	33	31	14	20	1.92
55177348--55177500	43	3.5	43	87	0	207	22	16	32	28	1.96
55177572--55177657	31	2.7	31	85	3	100	58	20	6	13	1.59
55177892--55177936	21	2.1	21	84	8	56	4	46	17	31	1.68
55181064--55181109	23	2.0	23	95	0	83	34	19	26	19	1.96
55183472--55183735	9	30.0	9	70	13	115	36	0	16	46	1.51
55183539--55183703	79	2.1	79	91	0	267	36	0	13	49	1.48
55183618--55183751	52	2.6	52	95	0	232	35	0	14	50	1.44
55183539--55183728	79	2.4	79	86	5	235	36	0	14	48	1.48
55186668--55186923	115	2.2	115	86	2	345	26	22	17	32	1.96
55186881--55186963	39	2.1	39	90	0	130	25	18	15	40	1.89
55186783--55187071	154	1.9	154	82	4	368	26	20	19	33	1.96
55187373--55187466	21	4.1	21	66	17	53	44	35	2	18	1.61
55187363--55187425	28	2.2	28	86	10	85	42	36	3	17	1.65
55187408--55187490	14	6.0	14	71	18	57	46	31	0	21	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55187953--55187993	21	1.9	22	90	5	66	21	0	31	46	1.52
55188287--55188376	40	2.2	40	80	5	101	22	18	22	36	1.95
55188315--55188435	61	2.0	61	83	1	154	22	18	19	40	1.91
55188377--55188485	41	2.6	42	86	2	150	22	15	18	43	1.88
55201936--55201990	27	2.0	27	89	0	83	16	25	23	34	1.95
55204132--55204304	94	1.8	94	87	2	258	23	27	19	30	1.98
55204080--55204301	47	4.7	47	73	14	167	23	27	18	30	1.98
55206938--55207014	41	1.9	40	89	2	118	35	25	19	19	1.95
55207386--55207489	45	2.3	45	77	0	100	18	19	14	48	1.82
55208084--55208110	13	2.1	13	100	0	54	37	18	14	29	1.91
55214636--55214771	43	3.2	42	80	6	148	25	15	26	32	1.95
55225416--55225521	21	5.1	21	64	8	65	19	26	16	36	1.94
55225387--55225618	41	5.7	41	88	0	313	21	29	15	34	1.94
55236704--55236847	39	3.7	39	88	1	200	26	27	22	23	1.99
55244528--55244561	17	2.0	17	88	11	52	70	2	11	14	1.27
55250368--55250429	31	2.0	31	93	0	106	16	22	22	38	1.92
55256108--55256149	16	2.6	16	85	7	50	38	14	2	45	1.58
55256363--55256540	50	3.6	49	74	10	171	30	24	17	26	1.97
55256354--55256543	101	1.9	101	87	0	281	31	23	18	26	1.98
55264009--55264048	21	1.9	21	84	0	53	47	5	15	32	1.66
55265892--55266043	10	16.1	10	64	21	51	60	1	4	32	1.28
55265953--55266004	21	2.3	24	80	9	65	65	1	0	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55266077--55266134	21	2.9	20	80	7	55	60	1	1	36	1.17
55267814--55268380	87	6.5	87	98	0	1062	30	26	16	26	1.97
55268327--55268464	44	3.1	44	87	2	186	26	26	16	30	1.97
55270443--55270532	43	2.1	41	87	4	126	28	32	25	13	1.93
55270504--55270587	38	2.2	38	85	4	116	32	26	20	21	1.98
55275703--55275766	32	2.0	32	90	0	101	23	26	15	34	1.95
55280510--55280539	15	2.0	15	93	0	51	23	26	23	26	2.00
55282192--55282234	19	2.4	19	88	7	63	37	13	11	37	1.82
55282200--55282236	19	1.9	19	100	0	74	37	10	16	35	1.83
55282200--55282245	19	2.2	22	88	11	71	39	8	17	34	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186