genome.fa.s20.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  111  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36672480--36672515	18	1.9	18	88	5	54	44	0	0	55	0.99
36675181--36675283	24	4.2	24	72	14	68	16	20	24	38	1.92
36675523--36675600	38	2.1	38	97	0	147	20	14	23	42	1.88
36676568--36676683	43	2.7	42	81	6	135	30	18	20	30	1.97
36676531--36676689	43	3.7	43	74	9	128	29	19	21	29	1.98
36679565--36679617	22	2.4	22	90	0	88	37	1	9	50	1.46
36680234--36680271	5	7.6	5	100	0	76	21	0	0	78	0.74
36680494--36680550	23	2.4	24	85	14	82	63	0	5	31	1.17
36685968--36686000	14	2.4	14	100	0	66	54	0	18	27	1.44
36687093--36687195	24	4.2	24	74	14	77	16	24	22	36	1.94
36691437--36691544	26	4.2	26	92	0	189	35	25	6	33	1.81
36698005--36698079	26	2.9	26	97	0	141	37	28	4	30	1.75
36703689--36703753	34	1.9	33	87	12	96	50	0	6	43	1.27
36703687--36703753	36	1.9	34	90	6	107	50	0	5	43	1.26
36705672--36705843	90	1.9	90	98	0	335	30	11	26	30	1.92
36713977--36714019	22	2.0	22	90	0	68	25	27	23	23	2.00
36715234--36715411	27	6.6	27	84	3	205	29	28	15	26	1.96
36715255--36715410	82	1.9	81	88	3	233	29	28	15	26	1.96
36723429--36723606	27	6.6	27	84	3	205	29	28	15	26	1.96
36723450--36723605	82	1.9	81	88	3	233	29	28	15	26	1.96
36727419--36727596	27	6.6	27	84	3	205	29	28	15	26	1.96
36727440--36727595	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36730186--36730291	47	2.2	48	86	1	142	50	9	27	13	1.72
36738327--36738386	27	2.3	26	85	2	75	36	16	21	25	1.94
36739128--36739245	27	4.4	27	83	1	139	27	20	17	34	1.95
36744077--36744130	27	2.0	27	85	3	74	35	20	22	22	1.96
36744132--36744275	27	5.3	27	81	6	157	25	18	18	37	1.93
36744135--36744276	54	2.6	54	87	3	198	25	19	17	38	1.93
36745428--36745478	26	2.0	26	96	0	93	35	0	13	50	1.42
36752747--36752815	15	4.6	15	83	0	84	11	17	13	57	1.64
36752738--36752825	30	3.0	30	81	8	99	10	17	15	56	1.66
36764227--36764783	287	1.9	287	93	2	958	29	14	20	35	1.92
36765604--36765780	89	2.0	89	92	2	293	33	14	25	27	1.94
36765753--36765902	67	2.2	67	83	8	180	33	17	28	21	1.96
36771982--36772029	24	2.0	24	100	0	96	37	20	12	29	1.90
36775001--36775062	29	2.1	29	96	0	115	51	14	24	9	1.72
36775932--36775969	20	1.9	20	88	0	58	52	2	2	42	1.29
36787739--36787780	20	2.1	20	86	8	59	42	4	4	47	1.45
36788160--36788225	15	4.3	15	73	17	55	43	0	3	53	1.16
36788244--36788280	16	2.3	16	86	13	58	40	0	0	59	0.97
36788292--36788347	22	2.6	22	83	5	62	51	0	0	48	1.00
36795455--36795548	46	2.0	46	100	0	188	14	13	12	58	1.64
36795467--36795563	46	2.1	45	84	7	124	17	12	12	57	1.64
36797658--36797692	17	2.1	17	100	0	70	17	28	5	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36801173--36801764	311	1.9	310	81	5	723	38	13	15	33	1.86
36803975--36804260	43	6.7	44	74	11	218	34	24	16	24	1.95
36803977--36804260	129	2.2	129	95	0	523	34	24	16	24	1.95
36805639--36805819	90	2.0	91	86	6	251	39	11	23	25	1.88
36807381--36807424	6	7.2	6	79	5	52	45	13	20	20	1.85
36807402--36807514	45	2.5	45	83	0	145	42	15	17	23	1.88
36808502--36808535	17	2.1	16	94	5	59	0	23	2	73	0.97
36809071--36809112	20	2.2	19	87	12	59	57	4	0	38	1.20
36810653--36810736	12	7.1	12	70	23	54	42	3	3	50	1.37
36810698--36810736	11	3.5	11	89	6	60	46	0	2	51	1.14
36814712--36814739	4	7.0	4	100	0	56	75	0	0	25	0.81
36817417--36817475	29	2.0	30	96	3	111	13	27	13	45	1.81
36824371--36824438	33	2.1	33	100	0	136	25	11	23	39	1.88
36825149--36825205	28	2.0	28	93	0	96	40	12	19	28	1.87
36835726--36835750	11	2.3	11	100	0	50	92	8	0	0	0.40
36844924--36844954	3	10.3	3	92	0	53	64	0	3	32	1.09
36847830--36847879	24	2.1	24	100	0	100	20	14	16	50	1.78
36849557--36849594	12	3.4	11	86	13	51	31	2	2	63	1.22
36849540--36849590	3	17.3	3	79	4	59	29	3	3	62	1.31
36854462--36854502	19	2.2	19	100	0	82	43	21	4	29	1.73
36857874--36857933	28	2.1	28	90	0	93	40	16	25	18	1.91
36861577--36861676	44	2.2	45	85	5	132	31	18	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36861577--36861799	45	4.8	45	75	12	141	36	15	17	30	1.91
36879845--36879918	29	2.5	29	77	12	71	71	8	4	16	1.25
36879963--36880022	11	5.5	11	73	13	52	70	0	6	23	1.11
36884097--36884157	30	2.0	30	87	0	86	24	36	26	13	1.92
36891274--36891403	27	4.8	27	78	5	102	21	24	16	37	1.93
36891290--36891406	54	2.2	54	84	3	155	22	26	15	35	1.94
36891476--36891601	45	2.8	45	87	2	128	24	22	13	39	1.90
36907477--36907852	205	1.8	205	89	1	592	28	20	18	31	1.96
36925651--36925738	21	4.1	22	77	10	92	36	25	22	15	1.94
36925656--36925736	44	1.9	41	82	7	99	34	27	22	16	1.95
36925929--36926023	28	3.6	24	81	13	93	46	33	4	15	1.66
36925943--36926026	28	3.0	28	91	1	132	46	30	3	19	1.66
36928602--36928664	7	8.9	7	77	16	58	61	1	1	34	1.15
36928617--36928671	21	2.8	19	82	12	67	65	0	0	34	0.93
36938993--36939018	12	2.2	12	100	0	52	7	15	30	46	1.74
36939067--36939302	41	5.8	41	92	1	386	34	21	24	19	1.96
36939067--36939302	81	2.9	81	92	0	400	34	21	24	19	1.96
36939067--36939302	122	1.9	122	93	1	402	34	21	24	19	1.96
36939047--36939321	41	6.8	40	86	5	347	36	21	23	18	1.95
36940065--36940102	19	2.0	20	94	5	69	65	2	5	26	1.27
36940299--36940335	6	6.2	6	93	0	65	0	51	0	48	1.00
36940980--36941032	7	7.6	7	100	0	106	60	0	13	26	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36940979--36941039	14	4.4	14	93	0	86	63	0	11	24	1.27
36941261--36941294	17	2.0	17	88	0	50	52	14	11	20	1.73
36952562--36952617	29	1.9	29	85	7	78	39	8	16	35	1.80
36954973--36955071	41	2.9	31	69	27	74	43	12	13	31	1.80
36954978--36955059	41	2.0	41	97	0	155	47	13	12	26	1.78
36961965--36961991	7	3.9	7	100	0	54	88	0	0	11	0.50
36962149--36962181	6	5.7	6	96	3	59	84	0	0	15	0.61
36966138--36966199	28	2.1	28	91	5	97	41	1	6	50	1.38
36966838--36966873	18	2.1	18	89	5	56	41	0	25	33	1.55
36966884--36966908	3	8.3	3	100	0	50	36	0	0	64	0.94
36967331--36967435	42	2.5	42	80	0	147	20	21	26	31	1.98
36967342--36967418	21	3.7	21	85	0	109	19	22	29	28	1.98
36968227--36968256	3	10.0	3	100	0	60	66	0	0	33	0.92
36969138--36969195	27	2.1	27	87	6	82	25	29	13	31	1.94
36969361--36969446	45	1.9	45	85	0	118	24	24	13	37	1.92
36969662--36969719	27	2.1	27	87	6	82	25	29	13	31	1.94
36969885--36969970	45	1.9	45	85	0	118	24	24	13	37	1.92
36968969--36970016	524	2.0	524	99	0	2087	24	26	12	35	1.92
36980422--36980481	21	2.9	21	94	0	102	13	23	16	46	1.82
36984774--36984868	18	5.2	18	71	9	66	38	11	8	41	1.72
36984999--36985049	6	8.5	6	86	0	75	47	15	19	17	1.83
36984999--36985051	18	2.9	18	97	0	97	45	16	20	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36986321--36986572	129	2.0	128	79	7	278	41	7	5	44	1.57
36987526--36987564	17	2.5	15	88	12	60	46	0	33	20	1.51
36989119--36989278	26	6.2	26	92	0	266	34	7	23	35	1.83
36989119--36989278	52	3.1	52	100	0	320	34	7	23	35	1.83
36990876--36990964	27	3.3	27	87	1	124	16	23	24	34	1.95
36993594--36993689	42	2.3	42	85	5	122	29	27	20	22	1.99
36994941--36994988	20	2.5	20	86	10	64	66	2	6	25	1.26
36994983--36995044	27	2.3	26	78	8	70	51	11	0	37	1.38
37002577--37002624	20	2.5	20	86	3	62	64	2	6	27	1.28
37002619--37002680	27	2.3	26	78	8	70	51	11	0	37	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186