genome.fa.s20.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  136  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44828550--44828617	29	2.3	29	82	5	84	27	29	13	29	1.94
44828724--44828791	29	2.3	29	82	5	84	27	29	13	29	1.94
44828898--44828965	29	2.3	29	82	5	84	27	29	13	29	1.94
44829074--44829145	29	2.5	30	82	13	96	30	29	12	27	1.93
44828091--44829114	174	5.9	174	98	0	1976	31	24	13	30	1.94
44832535--44832575	20	2.0	20	85	0	55	26	7	21	43	1.79
44836757--44836795	6	6.5	6	81	0	51	76	0	7	15	0.99
44838424--44838448	13	1.9	13	100	0	50	8	32	36	24	1.84
44843439--44843494	21	2.7	20	83	5	67	25	23	37	14	1.92
44844622--44844882	46	5.5	47	76	14	168	25	31	16	26	1.96
44844662--44844881	46	4.7	47	82	9	245	24	33	15	25	1.95
44856580--44856695	28	4.2	28	84	4	130	37	20	24	18	1.94
44856580--44856695	56	2.1	55	85	3	153	37	20	24	18	1.94
44861506--44861662	79	2.0	79	98	0	305	28	18	18	35	1.94
44864474--44864610	68	2.0	68	100	0	274	39	8	18	32	1.82
44872476--44872567	45	2.0	45	100	0	184	34	6	19	39	1.78
44881211--44881365	43	3.7	42	81	6	170	30	30	16	22	1.96
44881243--44881365	41	2.9	43	85	3	169	31	28	16	23	1.96
44884489--44884572	26	3.2	26	96	0	150	36	25	4	33	1.77
44894522--44894630	37	2.9	37	90	0	164	26	33	18	22	1.97
44894925--44895001	22	3.4	22	69	22	68	29	28	11	29	1.92
44894964--44895032	31	2.2	31	94	0	120	30	31	10	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44894785--44895001	47	4.6	47	90	1	310	26	29	11	31	1.92
44894995--44895197	47	4.3	47	98	0	388	28	30	11	29	1.92
44894917--44895079	78	2.1	78	96	0	299	28	30	11	29	1.92
44894833--44895171	172	2.0	172	97	0	633	27	30	12	29	1.93
44894870--44895126	125	2.1	125	96	0	478	28	29	12	29	1.92
44921157--44921225	36	1.9	36	93	0	120	33	31	8	26	1.87
44922250--44922311	31	2.0	32	87	3	90	35	19	24	20	1.96
44923059--44923229	27	6.3	27	85	0	234	25	21	18	35	1.95
44923030--44923229	54	3.7	54	81	4	233	27	21	18	33	1.96
44929639--44929700	31	2.0	32	87	3	90	35	19	22	22	1.96
44930408--44930607	54	3.7	54	83	2	251	26	21	17	35	1.95
44930408--44930607	27	7.4	27	82	1	222	26	21	17	35	1.95
44945448--44945507	30	2.0	30	86	0	84	38	6	25	30	1.81
44952418--44952490	38	1.9	38	82	0	92	26	17	24	31	1.97
44952513--44952624	43	2.6	43	92	0	188	11	25	32	31	1.91
44957846--44958109	40	6.6	40	82	6	238	24	21	27	26	1.99
44957892--44958109	79	2.7	80	81	6	255	25	21	27	26	1.99
44957842--44958132	80	3.7	80	78	5	295	25	21	26	26	1.99
44966031--44966314	40	7.2	39	87	4	333	22	23	28	25	1.99
44966031--44966314	119	2.4	119	82	5	378	22	23	28	25	1.99
44966031--44966314	79	3.6	79	84	4	360	22	23	28	25	1.99
44969419--44969493	38	1.9	40	89	5	118	21	24	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44969535--44969775	43	5.6	43	92	0	392	12	25	31	31	1.92
44973230--44973453	40	5.7	40	83	6	253	25	21	27	25	1.99
44973230--44973453	79	2.8	80	79	7	251	25	21	27	25	1.99
44973316--44973476	80	2.0	78	82	7	191	27	20	26	25	1.99
44980602--44980744	41	3.5	41	82	1	162	27	27	12	32	1.93
44980600--44980759	82	2.0	82	80	5	180	27	26	12	33	1.92
44988449--44988533	28	3.1	27	82	1	98	36	18	25	18	1.94
44993315--44993537	119	1.9	120	83	6	292	25	27	23	24	2.00
44993294--44993537	40	6.1	40	83	6	282	25	27	22	24	2.00
45000539--45000648	54	2.0	54	94	0	193	25	15	6	52	1.66
45001422--45001696	40	6.6	40	76	15	238	25	27	22	24	2.00
45001526--45001627	51	2.0	51	96	0	186	27	25	20	26	1.99
45001450--45001694	130	1.9	132	82	6	311	25	27	21	25	1.99
45003509--45003534	12	2.2	12	100	0	52	50	19	15	15	1.79
45004227--45004674	27	16.7	26	77	7	186	37	23	10	28	1.87
45004227--45004617	161	2.4	161	82	5	443	38	22	9	29	1.86
45004227--45004662	54	8.1	54	79	6	431	38	22	10	29	1.87
45004655--45004726	27	2.7	27	73	0	72	40	26	6	26	1.81
45004227--45004727	81	6.2	80	79	4	472	37	23	9	29	1.87
45004734--45004852	27	4.4	27	78	0	121	36	18	20	24	1.94
45004711--45004824	54	2.1	54	83	0	138	40	18	16	24	1.91
45004741--45004852	54	2.1	54	87	0	161	36	19	19	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45005280--45005344	22	3.0	22	80	8	78	20	26	23	30	1.98
45005503--45005609	27	4.0	26	84	8	108	19	23	20	36	1.95
45005503--45005602	53	1.9	53	83	2	130	20	24	20	36	1.95
45005727--45005819	6	15.3	6	71	18	68	19	19	13	47	1.82
45005730--45005799	25	2.8	25	84	0	95	18	21	14	45	1.84
45009396--45009456	30	2.0	30	83	0	77	31	22	8	37	1.84
45019604--45019838	84	2.8	85	83	3	296	25	19	24	30	1.98
45019607--45019838	43	5.5	42	71	13	163	26	18	24	30	1.98
45033426--45033661	59	4.0	59	98	0	454	25	15	18	40	1.90
45034885--45034942	27	2.2	26	78	6	71	34	18	8	37	1.82
45034898--45034969	27	2.7	27	86	0	90	29	18	13	38	1.89
45035333--45035382	18	2.8	18	84	0	64	24	20	12	44	1.85
45036306--45036410	27	3.8	27	80	10	106	35	21	23	19	1.96
45056741--45056835	27	3.5	26	81	8	109	41	20	22	16	1.91
45056741--45056853	27	4.1	27	80	6	86	39	20	22	17	1.92
45062851--45062964	43	2.7	42	83	1	138	29	16	27	26	1.97
45066858--45066882	13	1.9	13	100	0	50	32	0	20	48	1.50
45071413--45071455	23	1.9	22	90	4	68	13	6	27	51	1.67
45096352--45096437	28	3.0	28	81	6	102	23	30	18	27	1.98
45096352--45096465	56	2.0	57	84	5	151	26	28	16	28	1.97
45101147--45101199	16	3.3	16	81	0	70	9	18	18	52	1.72
45107535--45107559	7	3.6	7	100	0	50	24	76	0	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45113639--45114164	262	2.0	262	100	0	1052	31	15	16	36	1.90
45114903--45114955	16	3.3	16	76	7	54	30	3	24	41	1.72
45124098--45124219	46	2.6	47	84	5	147	26	22	14	36	1.93
45126069--45126121	14	3.7	14	87	5	79	41	5	15	37	1.70
45128372--45128626	55	4.8	54	80	9	278	36	17	25	21	1.95
45128379--45128579	108	1.8	110	90	4	327	34	17	25	22	1.96
45131276--45131326	24	2.1	24	85	0	66	25	19	33	21	1.97
45131288--45131337	24	2.1	24	96	0	91	28	20	26	26	1.99
45133930--45133966	18	2.1	18	100	0	74	21	16	10	51	1.74
45135381--45135433	24	2.2	24	86	0	79	35	3	37	22	1.72
45136863--45136971	27	4.1	27	90	1	157	15	24	21	38	1.92
45145535--45145679	40	3.7	40	81	10	172	24	27	23	24	2.00
45151591--45151691	24	4.2	24	90	0	157	34	1	42	20	1.64
45153560--45153660	24	4.2	24	90	0	157	34	1	42	20	1.64
45155092--45155196	27	3.9	27	83	5	124	17	23	21	37	1.94
45155092--45155200	54	2.0	53	85	5	148	16	23	21	38	1.93
45159261--45159516	55	4.8	54	77	10	226	35	16	24	23	1.94
45159269--45159469	108	1.8	110	84	2	280	33	16	24	24	1.96
45164353--45164466	50	2.3	50	81	3	140	28	20	28	22	1.98
45167176--45167281	33	3.5	30	79	8	101	42	25	18	13	1.87
45171448--45171566	29	4.2	29	78	2	125	26	30	13	29	1.94
45171454--45171562	58	1.9	57	84	5	148	24	32	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45171634--45171671	19	2.1	19	90	5	60	18	36	15	28	1.92
45172920--45172952	16	2.1	16	100	0	66	12	6	33	48	1.65
45174040--45174066	9	3.0	9	100	0	54	22	55	22	0	1.44
45177423--45177455	16	2.1	16	94	0	57	15	6	30	48	1.69
45182910--45183152	135	1.8	135	99	0	477	36	20	10	32	1.87
45192063--45192093	14	2.2	14	94	0	53	38	29	16	16	1.90
45197860--45197912	20	2.7	20	84	0	70	33	5	7	52	1.53
45199376--45199400	12	2.1	12	100	0	50	16	8	16	60	1.58
45202177--45202206	13	2.2	14	94	5	53	70	23	0	6	1.11
45203012--45203050	15	2.6	14	84	11	51	46	2	0	51	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186