genome.fa.s20.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  51  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15582559--15582622	19	3.4	18	87	8	85	7	7	0	84	0.78
15582560--15582603	13	3.3	13	84	12	54	9	6	0	84	0.79
15588026--15588056	14	2.2	14	100	0	62	70	0	16	12	1.16
15588249--15588295	22	2.2	21	84	3	58	36	21	8	34	1.84
15588268--15588318	19	2.9	16	78	18	57	35	17	9	37	1.83
15588266--15588308	19	2.1	21	91	8	72	34	18	9	37	1.83
15599484--15599533	20	2.5	20	80	9	57	38	2	18	42	1.61
15611814--15611864	24	2.1	24	88	0	75	39	29	25	5	1.79
15612314--15612393	40	2.0	40	97	0	151	20	22	16	41	1.90
15614342--15614857	258	2.0	258	100	0	1032	34	13	23	28	1.93
15622632--15622754	43	2.9	43	82	9	153	29	29	17	23	1.97
15633768--15633806	19	2.1	18	85	4	51	51	15	23	10	1.73
15637703--15637763	31	2.0	30	96	0	104	37	22	21	16	1.92
15658075--15658143	35	2.0	34	88	0	93	43	14	20	20	1.86
15662269--15662309	20	2.0	20	85	0	55	31	9	12	46	1.74
15664129--15664228	47	2.2	46	89	8	159	43	7	40	9	1.63
15664777--15664914	69	2.0	69	97	0	258	21	18	15	44	1.86
15673239--15673371	67	2.0	67	98	0	257	27	10	12	49	1.73
15674983--15675130	43	3.5	42	78	9	138	32	15	20	31	1.94
15680274--15680302	14	2.0	15	93	6	51	31	0	20	48	1.50
15681377--15681475	43	2.3	43	83	0	126	29	15	22	33	1.94
15681378--15681564	99	1.9	99	84	4	252	27	17	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15686153--15686273	43	2.8	43	82	1	154	29	14	23	31	1.95
15690975--15691054	35	2.3	35	82	0	88	26	22	22	28	1.99
15697216--15697296	41	2.0	40	85	7	110	23	8	11	56	1.61
15702887--15703069	79	2.3	81	82	7	223	24	21	27	25	1.99
15702887--15703069	40	4.6	40	83	6	221	24	21	27	25	1.99
15702938--15703102	79	2.1	79	83	6	201	26	20	27	26	1.99
15708773--15708803	13	2.4	13	94	0	53	38	0	3	58	1.15
15710328--15710359	5	6.6	5	92	7	57	18	0	0	81	0.70
15711505--15711707	40	5.1	40	85	4	252	22	22	28	27	1.99
15717886--15718041	42	3.7	42	79	11	158	24	17	27	30	1.98
15720759--15720877	25	4.8	25	84	0	130	26	21	21	29	1.99
15720759--15720877	50	2.4	50	85	2	150	26	21	21	29	1.99
15730749--15731089	119	2.9	119	90	1	506	31	19	16	32	1.94
15740383--15740494	43	2.6	43	94	0	188	31	31	25	11	1.91
15740492--15740840	38	9.1	38	87	1	482	31	25	21	22	1.98
15747914--15747966	26	2.0	27	85	7	74	24	15	22	37	1.92
15749450--15749505	26	2.2	26	93	0	94	35	25	8	30	1.86
15750931--15750994	32	2.0	32	93	0	110	18	32	14	34	1.91
15755453--15755557	55	2.0	51	90	7	165	18	33	10	38	1.85
15755669--15755828	26	6.2	26	93	0	275	36	25	6	31	1.81
15756283--15756329	16	2.9	16	81	12	60	65	2	0	31	1.04
15760725--15760918	47	4.1	48	86	6	231	34	10	28	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15760729--15760915	94	2.0	93	86	4	259	34	10	28	26	1.90
15761125--15761233	37	2.9	37	93	0	182	23	18	31	26	1.97
15763756--15763794	18	2.1	19	90	4	62	48	5	5	41	1.47
15764872--15764896	13	1.9	13	100	0	50	40	0	4	56	1.18
15764907--15764949	14	3.0	14	86	3	50	27	0	2	69	1.00
15766146--15766186	3	14.0	3	84	5	57	65	0	0	34	0.93
15766221--15766268	20	2.3	21	86	10	64	56	4	4	35	1.38
15766144--15766277	15	9.1	15	68	19	52	58	2	2	35	1.29
15766387--15766448	15	3.9	15	74	12	61	45	8	1	45	1.42
15766389--15766470	33	2.5	33	89	0	128	46	7	2	43	1.44
15767131--15767178	22	2.2	22	100	0	96	22	14	22	39	1.91
15777438--15777615	27	6.6	27	83	3	205	26	15	28	29	1.96
15777439--15777594	82	1.9	81	88	3	233	26	15	28	29	1.96
15777435--15777615	82	2.2	81	83	2	229	27	15	27	29	1.96
15785589--15785766	27	6.6	27	83	3	205	26	15	28	29	1.96
15785590--15785745	82	1.9	81	88	3	233	26	15	28	29	1.96
15785586--15785766	82	2.2	81	83	2	229	27	15	27	29	1.96
15789959--15789997	3	13.0	3	88	0	60	0	28	0	71	0.86
15797646--15798113	3	153.7	3	74	6	334	28	5	2	63	1.32
15798044--15798089	23	2.0	23	86	4	65	30	6	2	60	1.34
15798211--15798245	15	2.3	15	95	0	61	25	5	2	65	1.28
15798416--15798451	18	2.0	18	88	0	54	38	11	0	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15803190--15803237	21	2.3	21	85	3	62	10	37	16	35	1.83
15803202--15803246	21	2.2	21	88	4	65	13	37	15	33	1.86
15807225--15807402	92	1.9	92	100	0	356	32	27	15	25	1.95
15808978--15809024	24	2.0	24	87	8	69	55	6	6	31	1.51
15809084--15809164	19	4.4	19	70	16	71	55	2	2	39	1.26
15809222--15809251	9	3.3	9	90	0	51	66	3	0	30	1.07
15810436--15810477	14	2.8	15	78	10	50	14	4	45	35	1.66
15811167--15811576	73	5.2	73	70	17	234	38	20	14	27	1.91
15811112--15811558	159	2.8	159	94	0	788	36	20	14	28	1.92
15811575--15811719	73	2.0	73	87	8	213	32	24	16	26	1.96
15811642--15811809	90	1.9	90	81	2	203	30	18	13	37	1.90
15811234--15811828	249	2.4	243	74	9	554	36	19	14	29	1.91
15824517--15824560	22	2.0	22	86	8	63	52	6	6	34	1.55
15824620--15824700	19	4.4	19	70	16	71	55	2	2	39	1.26
15824758--15824787	9	3.3	9	90	0	51	66	3	0	30	1.07
15825731--15825772	14	2.8	15	78	10	50	14	4	45	35	1.66
15827777--15827909	46	2.9	46	82	1	149	32	25	20	21	1.98
15827777--15827954	47	3.8	46	81	5	198	32	25	19	22	1.97
15834618--15834717	50	2.0	50	96	0	182	36	26	4	34	1.75
15838298--15838488	47	3.9	47	80	5	177	24	16	28	30	1.97
15841650--15841688	20	2.0	20	94	0	69	48	0	2	48	1.15
15841776--15841831	14	4.0	14	81	4	51	35	14	10	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15841771--15841826	28	2.0	28	82	6	69	37	16	8	37	1.80
15842517--15842566	21	2.5	19	81	18	57	46	2	2	50	1.24
15846230--15846270	21	2.0	21	90	0	64	19	29	21	29	1.98
15856600--15856630	13	2.4	13	94	0	53	9	16	19	54	1.68
15861573--15861598	2	13.0	2	100	0	52	50	50	0	0	1.00
15862335--15862425	45	2.0	45	97	0	173	39	7	15	37	1.76
15863247--15863329	38	2.2	38	89	4	123	30	14	19	36	1.91
15868459--15868732	49	5.7	49	78	10	260	29	27	18	25	1.98
15868529--15868601	22	3.4	22	67	24	64	31	32	16	19	1.94
15868526--15868614	43	2.1	43	97	0	169	30	32	16	20	1.95
15868569--15868732	50	3.3	49	81	4	186	29	28	18	23	1.98
15868457--15868733	93	2.9	95	76	12	249	29	27	18	25	1.98
15871521--15871569	25	1.9	25	83	4	62	30	0	4	65	1.11
15871546--15871586	19	2.1	20	86	4	57	26	2	4	65	1.25
15873329--15873357	10	3.0	10	95	5	51	51	0	10	37	1.36
15873555--15873676	37	3.3	36	82	2	136	16	15	29	38	1.90
15879543--15879648	50	2.1	52	82	3	126	31	26	13	29	1.94
15886772--15886817	23	2.0	23	84	12	60	45	10	6	36	1.65
15886779--15886823	23	2.0	23	82	8	56	40	13	8	37	1.76
15889136--15889277	69	2.1	69	93	0	239	19	28	11	40	1.87
15891508--15891614	23	5.0	22	71	17	55	55	9	8	27	1.60
15892477--15892520	23	1.9	23	85	0	61	15	6	6	70	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15904068--15904114	24	2.0	24	83	8	60	38	0	23	38	1.55
15905825--15905854	16	1.9	16	93	6	53	40	0	3	56	1.16
15905842--15905880	16	2.5	15	84	8	51	58	2	0	38	1.12
15905896--15905928	9	3.6	9	95	4	57	45	0	0	54	0.99
15912808--15912877	24	2.9	24	79	14	81	21	24	20	34	1.97
15914371--15914598	126	1.8	126	90	1	368	39	16	16	27	1.90
15915118--15915159	18	2.3	18	84	8	50	59	11	4	23	1.51
15915178--15915339	3	54.7	3	70	12	77	63	2	2	31	1.20
15915254--15915335	36	2.3	35	81	8	94	63	2	3	30	1.24
15915299--15915341	16	2.8	16	82	3	52	65	4	0	30	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186