genome.fa.s20.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  110  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36388221--36388390	46	3.7	46	76	7	141	26	20	29	23	1.99
36389446--36389485	21	2.0	21	85	5	55	15	35	25	25	1.94
36394261--36394296	18	2.0	18	94	0	63	25	13	16	44	1.85
36400764--36400788	13	1.9	13	100	0	50	8	8	20	64	1.46
36401698--36401794	36	2.6	37	93	3	178	31	5	14	48	1.66
36401789--36401857	9	7.7	9	88	0	102	28	8	15	46	1.76
36402127--36402241	27	4.3	27	85	4	133	40	20	7	31	1.80
36402127--36402404	54	5.1	54	78	6	170	41	20	8	30	1.81
36402127--36402374	81	3.1	81	84	1	300	41	19	8	31	1.81
36402144--36402384	27	8.9	27	83	2	252	40	19	8	30	1.82
36402415--36402467	27	2.0	27	92	0	88	37	11	15	35	1.83
36402569--36402623	27	2.0	27	85	0	74	30	14	23	30	1.94
36402761--36402837	27	2.8	26	78	7	82	20	22	20	36	1.95
36402998--36403057	28	2.2	27	87	3	84	20	26	26	26	1.99
36403021--36403095	33	2.3	33	90	0	114	24	21	25	29	1.99
36410549--36410582	17	1.9	18	88	5	52	55	5	5	32	1.48
36429267--36429586	49	6.7	49	71	14	200	25	29	16	29	1.97
36429318--36429592	142	1.9	142	83	4	358	26	28	16	28	1.97
36434651--36434707	27	2.1	27	93	0	96	43	8	5	42	1.58
36434651--36434725	27	2.9	27	86	5	84	41	8	5	45	1.56
36435030--36435203	49	3.5	49	85	1	249	29	28	17	25	1.97
36435030--36435211	99	1.8	99	94	2	321	29	28	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36441769--36442097	47	6.9	47	95	0	532	32	7	30	29	1.86
36442216--36442294	37	2.1	37	90	0	122	24	18	31	25	1.98
36446993--36447081	5	16.8	5	73	19	65	15	6	1	76	1.05
36446988--36447081	6	16.0	6	74	14	63	15	6	1	76	1.04
36446992--36447081	11	8.4	11	69	21	66	15	6	1	76	1.04
36447012--36447081	17	3.8	19	74	14	58	15	5	1	77	1.03
36455272--36455448	49	3.6	47	75	11	178	23	30	19	26	1.98
36455219--36455446	98	2.3	96	82	5	262	23	30	19	26	1.98
36459401--36459642	116	2.1	116	94	0	423	33	25	12	28	1.93
36465728--36465851	47	2.8	44	83	6	151	27	17	27	27	1.98
36465728--36465863	44	3.0	44	78	13	143	27	16	27	27	1.97
36470010--36470097	40	2.2	40	89	4	133	25	26	23	25	2.00
36476088--36476121	3	11.3	3	100	0	68	32	0	0	67	0.91
36476802--36476850	21	2.3	22	79	10	57	28	36	0	34	1.58
36477116--36477175	15	4.1	15	76	8	70	46	30	0	23	1.52
36477298--36477381	38	2.2	39	89	2	125	16	0	33	50	1.46
36477400--36477594	41	4.8	41	84	5	225	19	21	21	37	1.94
36477400--36477635	41	5.8	41	82	5	178	21	19	20	37	1.94
36480793--36480916	44	2.8	45	83	11	148	28	19	29	22	1.98
36480798--36480979	46	4.0	44	75	16	136	28	17	29	25	1.98
36485099--36485125	13	2.1	13	100	0	54	14	25	37	22	1.93
36486339--36486601	40	6.6	39	86	4	278	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36486339--36486601	120	2.2	119	82	4	307	25	27	21	25	1.99
36486533--36486610	40	1.9	41	82	10	97	26	28	20	24	1.99
36494279--36494506	40	5.7	40	95	0	393	22	26	20	30	1.98
36497271--36497345	31	2.4	31	84	0	114	21	36	29	13	1.91
36499032--36499057	12	2.2	12	100	0	52	7	15	30	46	1.74
36499081--36499248	41	4.1	40	84	5	167	36	20	21	21	1.95
36499152--36499248	41	2.4	40	94	3	176	34	24	22	18	1.96
36500224--36500264	21	1.9	22	85	5	57	24	7	29	39	1.82
36501810--36501835	6	4.3	6	100	0	52	0	0	30	69	0.89
36504024--36504063	8	4.7	9	87	12	66	42	0	0	57	0.98
36504024--36504063	17	2.4	17	91	8	64	42	0	0	57	0.98
36505709--36506529	155	5.3	155	100	0	1642	35	13	13	37	1.83
36510643--36510764	61	2.0	61	100	0	244	29	18	16	36	1.92
36511017--36511142	63	2.0	63	96	0	234	29	7	6	56	1.53
36512711--36512758	21	2.3	21	100	0	96	22	18	58	0	1.39
36513060--36513191	44	3.0	43	86	4	185	30	19	21	28	1.98
36513160--36513218	27	2.1	28	90	3	93	32	22	18	27	1.97
36513097--36513301	113	1.8	114	82	3	270	26	21	22	29	1.99
36513188--36513443	87	3.0	87	80	5	322	25	21	22	29	1.99
36513060--36513348	157	1.8	157	83	4	386	28	20	22	29	1.98
36513191--36513443	43	5.9	43	84	3	285	25	22	22	29	1.99
36513384--36513506	63	2.0	63	86	3	176	23	22	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36513447--36513636	43	4.4	43	82	4	206	22	21	24	31	1.98
36513337--36513539	106	1.9	106	100	0	406	25	22	22	30	1.99
36513453--36513638	85	2.2	85	88	0	273	22	20	24	32	1.98
36513269--36513631	191	1.9	194	86	1	516	25	21	23	29	1.99
36513063--36513636	236	2.4	236	81	6	626	25	21	22	29	1.99
36515005--36515043	20	2.0	20	100	0	78	41	5	15	38	1.69
36520132--36520256	29	4.3	29	80	8	114	25	30	16	28	1.96
36520133--36520256	58	2.2	58	81	8	146	25	29	16	28	1.96
36520157--36520262	29	3.7	29	84	5	117	26	27	16	29	1.97
36520157--36520269	58	1.9	58	80	7	131	29	25	15	29	1.96
36527468--36527532	28	2.3	28	94	0	112	33	27	7	30	1.85
36527638--36527727	28	3.2	27	85	7	119	20	24	23	32	1.98
36527638--36527752	55	2.1	56	83	8	146	19	24	21	34	1.96
36528181--36528221	18	2.3	18	86	0	55	24	2	4	68	1.22
36528817--36528850	10	3.3	10	84	8	50	29	8	8	52	1.62
36528879--36528930	25	2.1	25	96	0	95	32	25	17	25	1.97
36540303--36540367	28	2.3	28	94	0	112	33	27	7	30	1.85
36540473--36540562	28	3.2	27	85	7	119	20	24	23	32	1.98
36540473--36540587	55	2.1	56	83	8	146	19	24	21	34	1.96
36541016--36541056	18	2.3	18	86	0	55	24	2	4	68	1.22
36542120--36542253	29	4.7	29	75	12	118	26	28	14	29	1.96
36542109--36542253	58	2.5	57	84	6	186	26	28	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36557351--36557531	47	3.9	46	76	11	165	28	18	27	25	1.98
36557353--36557483	44	2.9	44	80	10	149	28	19	26	25	1.98
36564555--36564580	3	8.7	3	100	0	52	30	0	0	69	0.89
36565575--36565608	15	2.3	15	89	0	50	47	32	0	20	1.51
36565860--36566054	41	4.8	41	84	3	232	20	21	22	36	1.95
36566667--36566706	15	2.7	15	88	0	53	10	5	20	65	1.42
36569256--36569386	44	3.0	44	85	8	169	28	19	30	21	1.98
36569259--36569420	44	3.5	44	81	12	159	29	19	29	22	1.98
36571765--36571834	31	2.3	31	97	0	131	15	35	34	14	1.88
36574721--36574759	20	2.0	20	100	0	78	41	5	15	38	1.69
36575827--36575876	18	2.8	18	100	0	100	16	38	30	16	1.90
36579851--36580003	29	5.4	28	82	6	173	27	30	15	27	1.96
36588844--36589071	114	2.0	114	99	0	447	32	15	22	29	1.95
36597477--36597600	39	3.2	39	83	0	158	28	28	19	24	1.98
36605295--36605337	22	2.0	22	90	0	68	23	27	13	34	1.93
36611654--36611721	34	2.0	34	88	0	100	39	25	7	27	1.82
36613617--36613758	43	3.1	45	75	15	132	28	19	29	23	1.98
36613502--36613760	47	5.7	46	74	14	166	28	19	28	23	1.98
36621071--36621238	46	3.6	46	75	9	153	29	19	27	22	1.98
36621115--36621337	47	4.8	47	77	11	172	28	18	29	23	1.98
36622910--36623030	60	2.0	60	93	0	206	31	14	5	48	1.67
36625668--36625731	31	2.1	31	96	0	119	32	21	7	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36626584--36626716	46	2.9	47	80	5	128	33	24	20	22	1.97
36629112--36629152	19	2.2	19	100	0	82	41	12	4	41	1.64
36629112--36629163	19	2.8	19	88	5	54	40	9	7	42	1.66
36631388--36631559	67	2.6	66	80	10	165	33	17	27	21	1.96
36643729--36644025	39	7.5	39	82	4	303	30	26	20	22	1.98
36643729--36644025	78	3.8	78	83	2	371	30	26	20	22	1.98
36658321--36658354	17	2.0	17	100	0	68	23	29	23	23	1.99
36661590--36661616	10	2.7	10	100	0	54	81	0	11	7	0.87
36671081--36671105	7	3.6	7	100	0	50	68	0	0	32	0.90
36671762--36671801	20	2.0	20	90	0	62	40	32	5	22	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186