genome.fa.s20.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  116  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38428034--38428154	44	2.8	44	89	0	188	29	33	17	19	1.95
38428130--38428295	48	3.5	48	84	4	187	23	27	20	28	1.99
38430624--38430675	27	2.0	26	84	3	68	34	21	26	17	1.95
38431276--38431329	27	2.0	27	85	3	74	35	20	22	22	1.96
38431330--38431529	27	7.4	27	86	2	249	26	20	18	35	1.95
38431330--38431529	81	2.5	81	85	1	276	26	20	18	35	1.95
38434279--38434354	24	3.2	24	92	0	134	31	21	13	34	1.91
38437519--38437636	60	2.0	59	89	1	182	24	24	29	21	1.99
38438422--38438598	46	3.7	49	78	11	179	24	28	20	27	1.99
38449139--38449177	21	1.9	21	85	15	55	51	15	2	30	1.57
38452045--38452255	46	4.5	48	79	4	198	24	27	20	27	1.99
38452047--38452210	48	3.5	46	79	7	159	25	26	20	27	1.99
38452045--38452255	94	2.2	93	81	5	237	24	27	20	27	1.99
38455134--38455207	25	2.8	26	76	19	73	58	5	1	35	1.30
38456034--38456472	227	1.9	227	97	0	833	29	15	10	44	1.79
38459658--38459712	27	2.2	26	84	12	71	29	23	1	45	1.63
38460169--38460204	18	2.1	18	89	5	56	33	25	0	41	1.55
38461395--38461431	16	2.4	15	82	8	56	64	0	0	35	0.94
38462015--38462084	21	3.2	21	64	18	52	24	11	24	40	1.88
38462010--38462097	45	2.0	45	95	0	158	26	11	25	37	1.89
38466226--38466289	31	2.1	31	93	0	110	32	26	10	29	1.90
38470530--38470554	12	2.1	12	100	0	50	16	8	16	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38470869--38470902	17	2.0	17	100	0	68	35	5	41	17	1.74
38471245--38471510	47	5.7	45	76	9	214	27	21	29	21	1.98
38471243--38471510	94	2.9	93	80	8	314	27	20	29	22	1.98
38475768--38475934	43	3.9	42	82	4	201	31	24	15	28	1.96
38495721--38495855	40	3.4	40	81	0	117	33	17	5	43	1.71
38495782--38495873	40	2.3	40	80	0	103	33	19	4	42	1.71
38495797--38495883	40	2.2	40	78	0	93	34	18	3	43	1.67
38497131--38497187	17	3.4	16	76	7	51	47	1	0	50	1.11
38499159--38499266	46	2.3	46	80	3	128	25	19	25	29	1.98
38499180--38499283	46	2.3	46	81	6	122	31	19	22	26	1.97
38509164--38509201	19	2.0	20	85	15	53	36	0	23	39	1.55
38518886--38519051	39	4.3	39	88	0	233	22	24	19	33	1.97
38525161--38525212	27	2.0	26	84	3	68	17	26	21	34	1.95
38530981--38531074	39	2.4	38	91	3	152	24	24	26	24	2.00
38535915--38535939	13	1.9	13	100	0	50	20	0	24	56	1.43
38546109--38546162	23	2.3	23	87	0	72	22	22	18	37	1.95
38552464--38552519	23	2.4	23	90	0	85	19	14	21	44	1.86
38556095--38556203	56	1.9	56	85	3	148	25	15	26	32	1.96
38557893--38558064	93	1.8	93	96	0	317	27	29	21	20	1.98
38557886--38558061	46	3.8	46	79	12	216	28	29	21	20	1.98
38565924--38566099	27	6.5	27	83	3	192	30	27	14	27	1.95
38565943--38566098	82	1.9	81	86	3	224	29	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38566579--38566604	12	2.2	12	100	0	52	42	0	7	50	1.31
38568781--38569092	46	6.7	46	80	12	388	29	27	20	22	1.98
38568786--38569046	93	2.8	93	98	0	504	29	28	20	22	1.98
38568832--38569000	47	3.6	47	80	13	231	28	27	20	23	1.98
38572974--38573195	119	1.9	120	83	6	299	25	27	22	24	2.00
38572953--38573196	40	6.1	40	83	6	282	25	27	22	24	2.00
38593098--38593132	17	2.0	17	88	5	52	25	37	20	17	1.94
38599873--38599933	29	2.1	29	84	0	77	18	29	6	45	1.74
38603661--38603716	28	2.0	28	82	0	67	28	26	23	21	1.99
38605772--38605882	27	4.1	27	82	5	127	38	20	23	17	1.93
38605772--38605882	54	2.1	53	84	1	141	38	20	23	17	1.93
38607291--38607392	24	4.3	24	91	1	143	24	40	1	33	1.67
38619265--38619431	79	2.1	79	97	1	316	34	26	12	26	1.92
38619590--38619853	40	6.6	40	85	5	284	25	28	21	25	1.99
38625638--38625818	48	3.9	47	78	5	172	34	23	13	28	1.93
38625642--38625820	91	1.9	95	82	5	231	34	23	13	29	1.93
38630588--38630621	18	1.9	18	88	5	52	38	20	0	41	1.53
38632112--38632292	48	3.9	47	77	7	165	34	23	13	28	1.93
38637038--38637299	54	4.9	54	84	3	312	35	16	23	23	1.95
38642516--38642959	47	9.4	47	92	1	699	33	9	29	28	1.88
38642516--38642959	237	1.9	235	91	0	726	33	9	29	28	1.88
38643078--38643156	37	2.1	37	88	4	115	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38647154--38647307	75	2.1	75	94	0	272	37	1	25	35	1.64
38661526--38661648	46	2.7	46	90	0	192	33	30	17	18	1.95
38664389--38664428	15	2.7	15	84	0	53	60	20	12	7	1.56
38667110--38667152	22	2.0	21	82	17	52	51	25	4	18	1.66
38670271--38670318	21	2.2	22	77	3	53	25	25	18	31	1.98
38671911--38671948	19	2.0	19	100	0	76	31	10	26	31	1.90
38673385--38673425	18	2.2	20	82	8	50	24	9	19	46	1.80
38675747--38675794	24	2.0	24	84	8	62	45	10	0	43	1.38
38675884--38675919	16	2.2	16	95	0	63	30	2	0	66	1.06
38675875--38676017	15	10.1	14	67	15	71	34	2	3	58	1.29
38680745--38680964	47	4.7	48	76	9	213	29	18	28	23	1.98
38680740--38680914	94	1.9	94	91	0	287	29	17	28	24	1.97
38681846--38681872	12	2.2	12	100	0	54	25	0	25	48	1.52
38681770--38681934	88	1.9	88	98	0	321	29	21	26	22	1.99
38693785--38693935	76	2.0	76	98	0	293	29	13	9	47	1.74
38694687--38694948	39	6.7	40	86	7	310	24	26	22	26	2.00
38710313--38710354	21	2.0	20	86	13	59	21	47	9	21	1.79
38710460--38710518	25	2.4	23	78	13	64	35	1	1	61	1.16
38715451--38715482	16	2.0	16	93	0	55	37	9	0	53	1.34
38730660--38730694	18	1.9	18	88	0	52	51	5	5	37	1.50
38744730--38745123	27	14.5	27	96	1	689	30	28	14	26	1.95
38752290--38752530	121	2.0	121	99	0	473	26	22	11	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38753213--38753528	28	11.6	27	94	3	535	31	29	14	25	1.95
38753213--38753528	55	5.8	55	97	0	580	31	29	14	25	1.95
38755570--38755625	3	18.7	3	96	0	103	32	0	32	35	1.58
38757485--38757707	79	2.8	78	82	9	256	24	26	22	26	2.00
38757485--38757707	39	5.7	40	85	8	257	24	26	22	26	2.00
38765475--38765697	39	5.7	40	82	8	230	25	26	21	26	2.00
38773194--38773324	40	3.3	39	91	4	199	28	27	19	25	1.98
38773194--38773376	80	2.3	81	81	9	207	26	27	20	25	1.99
38780810--38780938	39	3.3	39	92	0	204	30	20	26	23	1.98
38784065--38784323	132	2.0	132	95	0	464	21	20	28	29	1.98
38784364--38784589	27	8.4	27	81	1	229	34	17	20	27	1.95
38784364--38784589	80	2.8	81	80	6	244	34	17	20	27	1.95
38784365--38784569	107	1.9	107	84	2	277	35	18	20	26	1.95
38784733--38784784	27	1.9	27	84	0	68	17	19	21	42	1.89
38784934--38785059	61	2.1	60	82	4	146	23	22	26	26	2.00
38785691--38785734	21	2.1	21	84	16	56	52	15	6	25	1.68
38803720--38803780	30	2.0	30	93	6	106	37	16	32	13	1.87
38806527--38806611	43	2.0	43	95	0	152	24	24	23	27	2.00
38808356--38808385	15	2.0	15	93	0	51	50	33	13	3	1.58
38808657--38808851	65	3.0	65	95	4	342	27	16	16	38	1.90
38811337--38812273	28	33.5	28	99	0	1777	35	24	10	28	1.90
38819275--38819511	124	1.9	123	95	0	429	34	11	15	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38820300--38820375	37	2.1	37	97	0	143	42	7	18	31	1.79
38821312--38821518	53	3.8	53	78	3	216	38	18	23	19	1.93
38821984--38822054	32	2.2	32	92	0	115	38	9	32	19	1.85
38830372--38830457	34	2.5	34	84	0	100	20	25	24	29	1.99
38830403--38830476	34	2.2	34	92	4	123	24	24	22	28	2.00
38843747--38843832	27	3.2	26	85	6	118	38	15	24	22	1.92
38854817--38855040	40	5.6	40	81	6	256	26	26	22	24	2.00
38854817--38855040	83	2.8	80	83	4	272	26	26	22	24	2.00
38857671--38857706	18	2.0	18	94	0	63	11	30	33	25	1.90
38857672--38857714	18	2.4	18	88	0	59	13	32	30	23	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186