genome.fa.s20.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  139  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45943771--45943888	46	2.6	46	81	7	127	31	20	21	27	1.98
45946373--45946681	127	2.4	128	83	6	380	24	17	20	37	1.94
45953643--45953672	16	1.9	16	93	6	53	33	23	0	43	1.54
45953871--45954949	50	21.5	50	96	0	1908	30	29	16	24	1.96
45962778--45963051	50	5.4	50	80	5	268	31	27	16	24	1.97
45969426--45969749	50	6.4	50	83	4	359	31	27	16	24	1.97
45969414--45969749	101	3.3	101	81	5	371	30	27	17	24	1.97
45969475--45969749	151	1.8	152	87	3	410	31	26	16	25	1.97
45970875--45970899	8	3.1	8	100	0	50	36	28	12	24	1.91
45971390--45971435	23	2.0	23	100	0	92	43	13	8	34	1.74
45979884--45980103	46	4.8	44	75	13	160	27	20	29	22	1.98
45979884--45980010	47	2.7	45	81	13	143	27	20	29	22	1.98
45987346--45987393	22	2.1	23	92	3	80	27	8	22	41	1.82
45987655--45987751	50	1.9	50	89	6	151	25	17	30	25	1.97
45994190--45994260	25	2.9	25	82	14	85	46	25	15	12	1.81
45996305--45997260	469	2.0	468	97	1	1824	41	20	6	31	1.78
45997884--45997990	38	2.8	38	91	1	178	30	22	15	30	1.95
46003885--46003937	20	2.6	21	79	14	65	16	35	33	13	1.88
46005866--46006175	49	6.5	49	73	11	168	23	29	19	28	1.98
46006010--46006177	48	3.6	47	81	3	212	24	27	18	29	1.98
46008531--46008788	31	8.3	31	79	1	257	29	14	8	47	1.74
46008645--46008757	15	7.3	15	64	20	54	31	15	5	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46009455--46009537	41	2.0	41	97	0	157	56	12	7	24	1.60
46010970--46011235	27	9.6	28	77	10	192	28	21	12	37	1.90
46010970--46011235	54	4.8	55	77	8	213	28	21	12	37	1.90
46010997--46011240	28	8.9	28	77	10	193	28	22	12	36	1.90
46011100--46011259	84	1.9	84	84	2	214	28	20	9	41	1.83
46020781--46020904	33	3.8	33	94	0	221	29	41	9	18	1.82
46032717--46032756	17	2.3	18	86	4	55	30	10	30	30	1.90
46041877--46041936	11	5.6	11	75	15	63	41	1	1	55	1.20
46041841--46041936	42	2.3	42	96	1	176	40	2	3	54	1.28
46044857--46044924	28	2.3	30	85	5	86	17	17	10	54	1.70
46050552--46050582	15	2.1	15	100	0	62	45	6	6	41	1.55
46051979--46052030	24	2.2	24	100	0	104	34	9	3	51	1.53
46056754--46056796	8	5.4	8	88	0	68	58	0	0	41	0.98
46056817--46056867	21	2.5	20	81	9	59	72	3	17	5	1.20
46065216--46065270	21	2.7	21	83	8	60	36	0	18	45	1.49
46065689--46065762	26	2.9	26	74	9	64	17	22	25	33	1.96
46069132--46069493	48	7.6	48	88	2	509	25	31	17	25	1.97
46069168--46069493	96	3.4	96	95	1	566	25	31	17	24	1.97
46072090--46072135	23	2.0	23	100	0	92	39	13	8	39	1.75
46082175--46082282	26	4.2	26	95	0	180	36	23	7	33	1.83
46094938--46095206	40	6.7	40	91	0	421	21	26	20	31	1.98
46106626--46106655	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46107106--46107203	27	3.5	28	90	2	135	26	13	28	31	1.94
46107134--46107216	27	3.0	27	87	5	96	30	12	25	32	1.92
46107106--46107217	28	4.0	27	83	6	98	28	12	25	33	1.92
46118724--46118802	40	2.0	40	94	0	140	37	26	15	20	1.92
46126075--46126160	40	2.2	39	82	2	100	26	15	26	31	1.95
46141217--46141329	43	2.7	41	79	8	120	29	26	15	29	1.96
46141217--46141340	42	2.9	42	73	11	110	30	26	13	29	1.94
46148235--46148486	40	6.2	40	82	9	303	23	22	28	26	1.99
46148239--46148476	83	2.9	83	93	0	404	23	22	29	25	1.99
46152680--46152792	27	4.2	27	85	7	133	36	22	23	17	1.95
46152680--46152794	54	2.1	54	87	3	160	36	22	23	17	1.95
46152882--46152952	28	2.6	27	84	4	81	30	11	22	35	1.89
46154394--46154503	26	4.2	26	92	2	168	36	25	4	33	1.76
46155762--46155791	12	2.4	13	94	5	53	16	0	10	73	1.09
46156927--46156973	19	2.4	20	85	7	69	68	0	0	31	0.90
46156928--46156982	19	2.8	19	83	8	67	67	0	0	32	0.91
46157013--46157116	21	5.4	20	70	18	69	61	1	4	31	1.28
46157014--46157117	9	11.1	9	71	18	52	61	1	4	31	1.28
46157086--46157139	19	2.8	20	80	5	65	64	0	3	31	1.11
46157081--46157141	20	3.1	20	78	4	70	63	0	4	31	1.15
46161381--46161491	53	2.1	53	94	0	195	28	14	18	38	1.90
46164541--46164587	20	2.3	20	100	0	94	38	4	19	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46166945--46166998	28	1.9	28	92	0	90	25	29	24	20	1.99
46166957--46167075	29	4.1	29	75	1	96	31	26	19	22	1.98
46168958--46169074	43	2.8	42	80	2	117	33	24	16	25	1.96
46169099--46169136	20	1.9	20	88	0	58	23	26	21	28	1.99
46169052--46169180	64	2.0	64	96	0	240	29	27	17	25	1.98
46176734--46176809	22	3.7	21	75	15	59	39	17	7	35	1.78
46176770--46176857	19	4.8	19	88	8	146	37	14	11	36	1.83
46177204--46177403	45	4.5	45	87	1	267	25	29	14	31	1.95
46177221--46177386	89	1.9	89	92	0	278	26	30	14	28	1.95
46177417--46177647	78	3.0	78	89	2	356	25	22	17	34	1.96
46177328--46177977	344	1.9	348	88	2	995	25	23	17	33	1.96
46177771--46177977	78	2.7	77	90	3	308	25	24	17	32	1.97
46188524--46188750	38	5.9	38	84	5	217	22	23	24	29	1.99
46190495--46190532	19	2.0	20	85	15	53	39	23	0	36	1.55
46190762--46190932	93	1.8	93	91	2	281	29	29	20	21	1.98
46190757--46190929	46	3.7	47	79	10	203	30	28	20	21	1.98
46190807--46190948	46	3.1	45	74	18	132	28	28	19	23	1.98
46194542--46194599	22	2.6	22	84	7	73	43	17	3	36	1.66
46194555--46194614	19	2.9	20	85	9	68	40	16	6	36	1.75
46194581--46194623	19	2.4	19	80	7	54	41	11	11	34	1.78
46196639--46196672	11	2.8	12	86	13	52	0	23	0	76	0.79
46196758--46196803	3	15.7	3	82	13	60	60	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46196758--46196803	13	3.9	12	83	13	60	60	2	0	36	1.09
46196758--46196803	16	3.1	15	82	14	60	60	2	0	36	1.09
46197392--46197433	11	3.8	11	81	9	50	42	23	0	33	1.55
46197450--46197476	13	2.1	13	100	0	54	48	7	7	37	1.59
46198032--46198090	30	1.9	31	86	3	84	49	3	20	27	1.65
46198344--46198368	8	3.1	8	100	0	50	24	0	0	76	0.80
46199609--46199650	18	2.3	18	95	0	75	40	11	19	28	1.87
46206152--46206361	40	5.3	39	89	4	242	25	21	27	25	1.99
46206099--46206361	120	2.2	120	82	4	309	25	21	27	25	1.99
46206100--46206396	80	3.7	80	81	6	230	26	21	27	24	1.99
46214100--46214309	40	5.3	39	89	4	242	25	21	27	25	1.99
46214047--46214309	120	2.2	120	82	4	309	25	21	27	25	1.99
46214048--46214344	80	3.7	80	81	6	230	26	21	27	24	1.99
46217093--46217120	6	4.7	6	100	0	56	17	14	0	67	1.22
46227066--46227117	16	3.2	16	75	20	54	23	1	1	73	1.04
46228653--46228718	22	3.3	22	68	24	63	36	6	13	43	1.69
46228651--46228729	38	2.1	38	97	0	149	36	8	11	43	1.72
46232259--46232387	49	2.6	49	83	2	161	23	29	20	27	1.99
46235216--46235366	52	2.9	51	74	14	130	29	15	23	30	1.96
46236163--46236237	20	3.8	20	87	0	105	21	34	32	12	1.90
46242671--46243294	312	2.0	311	96	0	1140	36	11	19	33	1.87
46255698--46255795	28	3.5	28	79	8	92	27	30	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46255871--46255907	19	2.0	18	89	5	56	21	37	13	27	1.91
46255880--46255916	19	1.9	19	88	0	56	21	35	13	29	1.92
46257877--46258011	35	3.7	37	77	10	143	31	13	22	33	1.92
46259446--46260085	320	2.0	320	100	0	1280	24	32	10	33	1.88
46263216--46263313	28	3.5	28	79	8	92	27	30	14	27	1.95
46263389--46263425	19	2.0	18	89	5	56	21	37	13	27	1.91
46263398--46263434	19	1.9	19	88	0	56	21	35	13	29	1.92
46265735--46266028	35	8.4	34	75	10	202	35	31	4	29	1.76
46265801--46266028	70	3.2	70	78	2	242	34	30	4	30	1.77
46273081--46273139	26	2.3	25	80	8	66	28	20	0	50	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186