genome.fa.s20.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  144  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47561150--47561238	46	2.0	46	86	2	126	46	33	1	19	1.57
47561150--47561289	23	6.1	22	72	12	93	46	31	2	19	1.64
47570874--47570962	46	2.0	46	86	2	126	46	33	1	19	1.57
47570874--47571013	23	6.1	22	72	12	93	46	31	2	19	1.64
47577253--47577338	43	2.0	43	90	0	136	29	31	16	23	1.96
47597029--47597179	27	5.6	27	82	4	178	27	15	27	29	1.96
47597030--47597179	82	1.8	81	88	4	230	26	15	28	30	1.96
47600710--47600782	23	3.2	22	73	19	53	36	8	0	54	1.30
47601424--47601453	3	10.0	3	92	0	51	63	0	0	36	0.95
47601570--47601608	20	2.0	20	85	10	53	56	0	0	43	0.99
47601602--47601672	19	3.8	18	76	12	63	23	2	2	70	1.14
47601648--47601704	20	2.7	20	81	8	60	29	3	1	64	1.20
47602662--47602704	12	3.5	12	81	6	50	44	0	0	55	0.99
47602656--47602704	25	2.0	25	91	0	80	44	0	0	55	0.99
47604938--47605073	71	1.9	71	90	0	218	27	16	16	38	1.91
47604952--47605098	71	2.1	71	79	5	154	26	18	17	37	1.93
47606112--47606228	42	2.8	43	74	8	123	23	28	26	21	1.99
47607719--47607840	43	2.8	44	75	7	126	33	24	15	26	1.95
47615905--47616150	50	4.9	50	73	10	180	27	17	24	30	1.97
47615961--47616144	100	1.8	101	85	3	264	27	19	24	28	1.99
47624779--47625074	50	5.9	49	75	11	215	25	16	24	33	1.96
47624828--47625009	101	1.8	100	86	4	267	26	16	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47629566--47630290	363	2.0	363	98	0	1396	35	8	21	33	1.85
47631229--47631579	40	8.6	40	74	12	257	23	20	25	30	1.99
47631382--47631579	40	5.0	40	90	1	301	22	21	26	29	1.99
47631229--47631579	80	4.3	80	76	10	361	23	20	25	30	1.99
47638164--47638374	40	5.3	40	81	3	239	25	26	22	25	2.00
47638461--47638644	40	4.6	40	81	5	219	25	25	23	26	2.00
47638184--47638723	270	2.0	270	98	0	1044	29	25	18	26	1.98
47645508--47645610	52	2.0	52	96	0	188	41	23	2	32	1.69
47645842--47646025	40	4.6	40	81	5	219	25	26	23	25	2.00
47645806--47646025	80	2.8	78	84	5	248	25	26	22	24	2.00
47658136--47658248	33	3.4	32	85	7	138	37	12	23	27	1.90
47658241--47658357	31	3.8	31	91	0	180	28	18	26	26	1.98
47658454--47658518	27	2.4	27	92	0	103	38	13	26	21	1.91
47658568--47658646	34	2.4	34	85	6	90	30	11	26	31	1.91
47659680--47659721	21	2.0	21	100	0	84	38	4	23	33	1.76
47665138--47665415	40	6.9	40	94	2	445	27	20	25	25	1.99
47666409--47666513	53	2.0	53	88	0	156	27	19	22	30	1.98
47670894--47671105	40	5.3	40	86	4	234	25	21	27	25	1.99
47670961--47671138	79	2.2	80	81	2	198	24	21	28	24	1.99
47674911--47675043	66	2.0	66	91	2	214	18	13	27	39	1.89
47674977--47675229	140	1.8	140	90	1	409	23	16	26	33	1.95
47679084--47679293	40	5.3	39	89	4	242	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47679031--47679293	120	2.2	120	82	4	309	25	21	27	25	1.99
47679032--47679328	80	3.7	80	81	6	230	26	21	27	24	1.99
47683184--47683369	40	4.7	40	88	5	227	25	22	26	25	2.00
47683237--47683402	80	2.1	79	82	7	194	27	19	25	26	1.99
47686317--47686365	25	2.0	25	83	0	62	38	22	12	26	1.89
47695419--47695651	27	8.7	27	82	5	206	39	22	8	29	1.84
47695427--47695596	54	3.2	54	85	4	236	40	20	8	31	1.82
47695419--47695576	81	2.0	80	92	1	262	40	21	6	31	1.80
47695427--47695667	54	4.5	54	79	3	227	39	21	9	30	1.84
47695697--47695751	27	2.0	27	89	0	83	36	20	23	20	1.95
47696297--47696348	27	2.0	26	88	3	77	17	25	21	36	1.94
47696280--47696431	67	2.3	67	96	2	279	18	29	22	29	1.97
47696363--47696415	27	2.0	27	88	0	79	20	26	18	33	1.96
47698921--47698977	6	9.3	6	75	17	55	49	15	17	17	1.81
47699096--47699155	27	2.3	26	85	2	75	35	20	23	21	1.96
47699498--47699955	27	17.0	27	84	4	505	25	20	17	36	1.95
47699498--47699955	81	5.7	81	84	3	589	25	20	17	36	1.95
47699940--47700281	27	12.7	27	76	9	139	32	9	20	37	1.85
47699940--47700124	81	2.3	80	80	3	192	34	9	19	36	1.84
47699992--47700317	81	4.0	81	84	1	332	33	9	19	37	1.84
47700048--47700307	27	9.6	27	84	0	304	31	8	20	39	1.83
47701239--47701299	30	2.1	30	90	3	97	29	34	3	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47702461--47702520	27	2.3	26	85	2	75	35	20	23	21	1.96
47702855--47703314	27	17.0	27	88	0	587	24	20	18	36	1.95
47703342--47703647	27	11.3	27	83	1	283	30	9	20	39	1.84
47704579--47704640	30	2.1	30	100	0	124	27	37	3	32	1.73
47705804--47705863	27	2.3	26	88	2	84	36	20	21	21	1.95
47705902--47705953	27	2.0	26	84	3	68	34	21	26	17	1.95
47705831--47705972	67	2.1	68	86	5	196	30	21	28	19	1.97
47706228--47706648	27	15.9	27	84	5	439	24	19	18	37	1.94
47706202--47706648	81	5.6	81	80	6	502	24	19	18	36	1.94
47706502--47706541	19	2.1	19	85	0	53	22	22	17	37	1.94
47706416--47706599	100	1.8	100	94	0	323	25	20	17	35	1.95
47706416--47706620	100	2.0	100	90	1	322	25	20	17	36	1.94
47706694--47707008	27	11.7	27	85	0	337	30	8	20	40	1.83
47708635--47708686	27	2.0	26	84	3	68	34	21	26	17	1.95
47708931--47709398	27	17.3	27	86	2	500	24	20	18	36	1.95
47708935--47709396	81	5.7	81	87	0	606	24	20	18	36	1.95
47709381--47709721	27	12.6	27	78	9	142	32	9	20	37	1.85
47709351--47709721	81	4.6	81	80	7	315	31	10	20	37	1.86
47709417--47709721	27	11.3	27	84	4	310	31	9	20	38	1.85
47716249--47716369	38	3.1	38	89	2	161	21	21	23	33	1.98
47723271--47723647	48	7.9	48	94	0	646	35	6	27	30	1.82
47723788--47723890	37	2.8	37	90	0	170	23	20	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47726276--47726317	20	2.1	20	90	0	66	35	30	2	30	1.71
47726405--47726526	43	2.9	42	81	7	140	27	26	18	28	1.98
47731304--47731340	17	2.2	17	95	0	65	43	27	10	18	1.83
47741369--47741535	47	3.6	44	79	10	158	21	30	19	28	1.98
47741314--47741583	94	2.9	90	79	10	303	22	29	20	28	1.98
47742532--47742563	13	2.5	13	100	0	64	56	18	0	25	1.42
47744183--47744313	33	4.2	33	70	15	107	29	20	13	35	1.91
47744982--47745022	20	2.0	22	85	9	59	29	19	0	51	1.47
47749571--47749833	47	5.6	45	78	7	231	22	29	18	29	1.97
47763705--47763877	46	3.7	46	75	13	192	30	27	20	21	1.98
47764301--47764360	30	2.0	30	90	0	93	30	25	8	36	1.85
47781508--47781637	47	2.7	49	84	5	158	22	28	20	28	1.99
47781506--47781780	45	5.9	47	71	11	158	22	28	19	29	1.98
47793273--47793300	12	2.3	12	100	0	56	32	32	17	17	1.94
47799723--47799795	36	2.0	36	97	0	137	35	16	19	28	1.93
47806272--47806401	47	2.7	49	83	5	158	21	29	20	28	1.98
47806370--47806539	94	1.8	92	83	5	225	24	29	17	28	1.97
47814537--47814600	30	2.2	29	83	5	76	25	9	29	35	1.87
47814936--47815288	48	7.5	47	71	10	197	27	18	28	25	1.98
47814985--47815286	94	3.2	95	79	10	273	27	19	27	25	1.99
47817678--47817764	37	2.4	37	90	3	122	26	32	18	22	1.97
47817905--47818290	48	8.0	48	90	3	607	31	26	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47817905--47818290	96	4.0	96	97	0	709	31	26	6	35	1.81
47820795--47820830	14	2.6	14	86	0	54	25	13	30	30	1.94
47823846--47823881	18	2.0	18	94	0	63	41	11	22	25	1.86
47834638--47834666	15	1.9	15	100	0	58	37	13	6	41	1.72
47838232--47838263	15	2.1	15	94	0	55	28	18	6	46	1.73
47838912--47838952	21	2.0	21	90	4	66	29	0	21	48	1.50
47839528--47839630	54	1.9	54	84	4	136	33	10	18	36	1.85
47842960--47843028	29	2.4	29	87	0	102	39	30	14	15	1.88
47853347--47853388	9	4.9	9	85	8	52	23	35	0	40	1.55
47853778--47853845	35	1.9	35	96	0	127	32	23	22	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186