genome.fa.s20.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  152  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50394004--50394153	72	2.1	73	85	6	198	11	35	5	48	1.62
50394710--50394743	3	11.3	3	100	0	68	32	0	0	67	0.91
50397256--50397286	15	2.0	16	93	6	55	51	3	6	38	1.44
50400039--50400099	14	4.6	14	78	12	65	52	0	3	44	1.17
50400034--50400084	25	1.9	26	88	11	77	52	0	3	43	1.19
50400074--50400099	7	3.7	7	100	0	52	57	0	0	42	0.98
50400087--50400158	21	3.6	19	67	20	56	63	0	2	33	1.08
50400082--50400135	23	2.3	23	81	18	67	66	0	0	33	0.92
50400389--50400450	10	5.8	10	74	18	54	64	0	3	32	1.09
50400382--50400484	24	5.0	19	73	24	68	62	0	4	32	1.23
50400463--50400551	25	3.6	25	76	15	80	50	0	5	43	1.25
50400503--50400557	25	2.1	26	80	12	60	45	0	9	45	1.35
50402065--50402205	43	3.3	42	84	5	165	25	14	29	30	1.95
50402540--50402655	40	2.9	40	79	8	119	43	29	12	13	1.82
50407818--50407844	3	9.0	3	100	0	54	33	0	0	66	0.92
50410261--50410407	43	3.5	41	76	12	129	27	18	25	28	1.98
50410261--50410378	41	2.8	43	80	11	136	26	17	25	30	1.97
50414129--50414182	15	3.7	15	82	2	65	59	18	14	7	1.58
50416468--50416494	12	2.2	12	100	0	54	51	7	0	40	1.30
50416947--50417044	27	3.5	28	90	2	135	26	13	28	31	1.94
50416975--50417057	27	3.0	27	87	5	96	30	12	25	32	1.92
50429923--50430014	40	2.3	40	92	3	150	27	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50431167--50431594	85	5.0	85	87	0	606	26	23	20	29	1.98
50431167--50431594	169	2.5	170	89	0	633	26	23	20	29	1.98
50431206--50431714	127	4.0	127	75	6	472	27	23	19	28	1.99
50431577--50431734	85	1.9	85	87	0	235	29	24	18	27	1.98
50434462--50434495	17	2.0	17	94	0	59	26	29	8	35	1.87
50437743--50437774	12	2.6	13	90	9	50	50	25	6	18	1.70
50438298--50438830	85	6.3	85	91	0	834	26	23	20	30	1.98
50438298--50438833	254	2.1	255	92	0	894	26	22	20	30	1.98
50457233--50457301	27	2.6	27	88	0	93	37	10	21	30	1.87
50458246--50458282	18	2.1	18	100	0	74	21	24	5	48	1.71
50463595--50463621	13	2.1	13	100	0	54	14	33	37	14	1.88
50463980--50464004	12	2.1	12	100	0	50	24	8	8	60	1.52
50472342--50472413	36	2.0	36	94	0	126	15	0	31	52	1.43
50474319--50474387	24	2.9	24	82	2	86	39	18	20	21	1.93
50476951--50476990	20	2.0	20	85	5	53	47	10	7	35	1.65
50480254--50480359	55	1.9	55	83	11	137	18	23	34	22	1.96
50484921--50484962	18	2.6	16	79	17	50	21	33	0	45	1.52
50484923--50484959	18	2.1	18	90	5	58	21	27	0	51	1.48
50502310--50502424	55	2.1	56	83	8	146	34	21	24	19	1.96
50502335--50502424	27	3.2	27	85	7	119	32	23	24	20	1.98
50502530--50502597	28	2.4	28	92	4	111	30	7	27	33	1.84
50509551--50509589	19	2.1	19	90	0	60	28	5	30	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50525429--50525543	46	2.5	45	86	6	144	26	29	16	27	1.97
50527958--50528068	20	5.4	20	71	14	66	34	17	21	27	1.95
50527992--50528071	41	2.0	41	82	5	99	38	18	16	26	1.92
50529124--50529545	95	4.5	93	75	11	313	39	16	15	28	1.89
50529124--50529512	188	2.1	188	80	4	426	39	16	15	28	1.88
50541028--50541196	90	1.9	91	81	1	205	26	21	28	24	1.99
50546357--50546392	17	2.1	17	100	0	72	36	27	11	25	1.90
50549307--50549441	53	2.5	53	80	2	144	18	20	20	40	1.92
50559248--50559303	11	5.5	11	71	16	57	35	12	19	32	1.89
50559237--50559303	20	3.3	20	93	0	116	34	11	20	32	1.90
50559352--50559452	24	4.3	24	89	5	163	28	17	22	30	1.97
50559354--50559448	23	4.1	23	90	4	156	28	18	21	31	1.97
50559356--50559446	45	2.0	47	93	4	159	25	19	21	32	1.97
50559663--50559723	31	2.0	31	90	0	95	31	16	27	24	1.96
50569559--50569625	20	3.3	20	89	0	107	34	11	19	34	1.88
50569677--50569771	45	2.1	47	92	4	158	27	20	21	31	1.97
50569677--50569771	23	4.1	23	91	5	156	27	20	21	31	1.97
50575193--50575429	119	2.0	119	94	0	420	30	11	28	29	1.92
50576024--50576370	174	2.0	174	97	0	649	31	14	27	26	1.95
50579756--50579803	25	1.9	25	91	0	78	35	25	14	25	1.94
50579790--50579827	18	2.1	18	100	0	76	23	21	15	39	1.92
50579869--50579924	11	5.5	11	71	16	57	35	12	19	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50579858--50579924	20	3.3	20	93	0	116	34	11	20	32	1.90
50579974--50580093	45	2.6	47	93	5	217	28	20	20	30	1.97
50579976--50580093	23	5.1	23	94	4	211	27	20	21	30	1.98
50580311--50580371	31	2.0	31	93	0	104	32	16	26	24	1.96
50591010--50591044	15	2.4	15	90	4	54	80	2	0	17	0.84
50594100--50594272	46	3.7	46	76	10	181	30	26	20	22	1.98
50594105--50594273	93	1.8	93	89	0	266	30	27	20	22	1.98
50602231--50602318	43	2.0	43	100	0	176	23	29	20	26	1.99
50609563--50609603	14	3.1	14	79	10	50	73	2	4	19	1.13
50629611--50629788	27	6.6	27	84	3	205	29	28	15	26	1.96
50629632--50629787	82	1.9	81	88	3	233	29	28	15	26	1.96
50634213--50634251	19	2.1	19	90	0	60	30	7	12	48	1.69
50634187--50634315	54	2.4	54	85	2	170	34	6	16	41	1.75
50634519--50634572	20	2.7	20	82	0	63	24	20	18	37	1.94
50634519--50634588	30	2.3	30	85	9	90	21	20	18	40	1.92
50634519--50634583	20	3.2	20	71	16	53	23	21	16	38	1.93
50637131--50637169	15	2.4	15	87	12	51	66	2	20	10	1.33
50643310--50643807	251	2.0	251	99	0	978	41	17	17	22	1.90
50644119--50644227	55	2.0	55	98	0	209	46	11	12	29	1.76
50644717--50644799	35	2.5	32	82	11	87	71	2	19	7	1.21
50647417--50647464	15	3.3	15	73	5	53	31	0	25	43	1.55
50647411--50647470	29	2.1	29	90	0	93	30	0	28	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50648447--50648491	14	3.3	14	78	6	56	48	15	0	35	1.45
50649286--50649311	8	3.2	8	100	0	52	38	0	38	23	1.55
50651498--50651526	13	2.2	13	100	0	58	62	10	0	27	1.28
50655679--50655856	27	6.6	26	82	6	178	26	15	28	29	1.96
50655680--50655835	82	1.9	81	86	3	224	26	16	28	28	1.97
50655676--50655856	82	2.2	81	82	2	220	27	16	27	29	1.97
50662554--50662692	47	3.0	47	96	0	251	30	10	30	27	1.91
50663041--50664081	47	22.1	47	96	1	1814	30	8	31	29	1.87
50666937--50666987	21	2.4	21	83	6	68	35	7	35	21	1.83
50668633--50668711	37	2.1	37	86	4	106	26	30	17	25	1.97
50668830--50668997	47	3.6	47	87	0	246	27	32	8	31	1.87
50671546--50671577	14	2.2	15	94	5	57	62	0	37	0	0.95
50675154--50675181	7	4.0	7	100	0	56	14	0	57	28	1.38
50677104--50677279	50	3.5	49	82	3	199	30	26	17	25	1.97
50677104--50677287	101	1.8	99	83	4	244	29	27	17	25	1.98
50684231--50684459	40	5.8	40	85	9	256	24	23	27	25	2.00
50684230--50684451	78	2.8	78	85	5	279	24	23	26	25	2.00
50687380--50687902	262	2.0	262	98	0	1010	30	22	17	29	1.96
50696343--50696440	28	3.5	28	94	1	162	31	28	13	26	1.94
50700647--50700754	37	2.9	37	94	0	180	25	32	19	22	1.97
50700917--50701149	47	5.0	47	90	0	340	25	29	12	32	1.93
50701069--50701150	25	3.4	25	65	21	75	29	29	9	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50733151--50733188	14	2.9	13	81	11	51	57	10	13	18	1.63
50733546--50733572	13	2.1	13	100	0	54	14	37	33	14	1.88
50746706--50746967	68	4.0	64	77	10	219	30	16	28	25	1.96
50746760--50746940	67	2.7	64	83	6	202	32	16	28	23	1.96
50752576--50752634	30	1.9	31	86	3	84	37	8	23	30	1.85
50752965--50753090	48	2.6	48	87	0	180	27	17	30	24	1.97
50756200--50756248	11	4.7	11	80	12	59	32	18	12	36	1.88
50772565--50772797	40	5.8	41	87	6	305	24	21	28	24	1.99
50772565--50772797	82	2.9	81	88	2	326	24	21	28	24	1.99
50772565--50772797	122	1.9	122	88	1	351	24	21	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186