genome.fa.s20.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  183  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60572158--60572202	21	2.1	21	84	8	56	37	35	4	22	1.74
60572170--60572209	21	1.9	21	89	0	62	42	27	5	25	1.75
60572636--60572777	21	6.7	21	72	13	71	40	36	1	21	1.62
60572651--60572684	14	2.4	14	85	0	50	52	29	0	17	1.45
60573072--60573500	155	2.6	158	86	7	571	30	18	20	29	1.97
60573433--60573524	39	2.3	40	83	1	123	26	21	17	34	1.95
60575429--60575746	47	6.8	46	75	8	268	29	17	28	23	1.97
60575483--60575746	94	2.8	94	87	3	381	29	18	28	23	1.97
60576856--60576894	21	1.9	20	84	5	51	12	35	28	23	1.91
60589363--60589395	17	1.9	17	100	0	66	24	9	12	54	1.66
60593143--60593407	47	5.6	47	76	11	170	31	18	27	23	1.97
60612244--60612273	14	2.2	13	94	5	51	33	0	13	53	1.40
60620269--60620298	14	2.2	13	94	5	51	33	0	13	53	1.40
60621954--60622080	63	2.0	63	81	3	148	22	16	29	31	1.96
60622687--60622723	5	7.6	5	88	11	51	16	0	0	83	0.64
60624950--60625003	27	2.0	27	88	0	81	27	25	11	35	1.90
60627375--60627533	42	3.6	42	72	12	131	26	20	26	26	1.99
60635604--60635654	17	3.0	17	88	5	68	27	41	15	15	1.88
60638808--60639226	207	2.0	207	95	0	759	31	17	19	31	1.95
60641864--60642083	50	4.6	47	75	12	157	26	17	30	25	1.97
60641869--60642083	96	2.3	95	82	9	244	26	17	31	25	1.97
60641733--60642083	46	7.4	48	71	11	194	27	17	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60648702--60648734	15	2.1	16	88	5	50	18	3	6	72	1.18
60648882--60648944	33	1.9	33	87	12	94	52	7	0	39	1.31
60649002--60649063	32	1.9	32	83	6	81	50	3	1	45	1.27
60657038--60657088	25	2.0	25	100	0	102	33	31	3	31	1.76
60659560--60659647	45	2.0	45	88	0	131	36	21	14	27	1.93
60662783--60662823	17	2.6	16	78	21	50	56	14	0	29	1.39
60669871--60670131	55	4.7	55	66	19	146	20	24	32	23	1.98
60669833--60670168	168	2.0	168	100	0	672	21	23	30	25	1.99
60670707--60670738	14	2.4	13	90	10	55	62	12	6	18	1.50
60673153--60673212	24	2.5	24	86	0	84	40	10	21	28	1.85
60674026--60674065	21	2.0	21	85	14	57	62	2	0	35	1.09
60674037--60674091	26	2.1	26	83	12	69	58	1	1	38	1.20
60675171--60675227	26	2.2	26	84	6	71	21	12	0	66	1.23
60675112--60675272	85	1.9	86	94	2	288	19	16	1	61	1.43
60675178--60675235	26	2.1	28	90	6	93	17	15	0	67	1.24
60675114--60675297	85	2.2	84	85	8	255	19	17	2	60	1.46
60675689--60675740	24	2.2	24	89	0	77	55	9	1	32	1.43
60677659--60677710	24	2.2	24	89	0	77	55	9	1	32	1.43
60683822--60683860	6	6.5	6	93	0	69	66	15	2	15	1.36
60684999--60685090	43	2.1	43	86	4	123	27	11	26	34	1.91
60694006--60694039	18	1.9	18	94	5	61	32	0	5	61	1.20
60696943--60697003	13	4.7	13	72	0	59	36	3	26	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60696942--60697004	26	2.4	26	81	0	81	36	4	25	33	1.77
60697223--60697303	33	2.7	30	76	16	78	50	1	1	46	1.17
60697297--60697367	12	6.2	12	71	22	55	43	0	2	53	1.15
60699395--60699434	20	2.0	20	85	14	55	32	0	17	50	1.47
60699680--60699751	25	2.8	26	79	12	78	20	26	19	33	1.97
60707101--60707133	5	6.6	5	100	0	66	18	0	0	81	0.68
60721693--60721736	21	2.1	21	100	0	88	22	4	22	50	1.67
60725546--60725894	187	1.9	187	96	0	653	31	18	16	33	1.93
60726577--60726628	15	3.2	15	73	19	50	44	0	1	53	1.11
60726661--60726697	16	2.3	16	86	13	58	40	0	0	59	0.97
60726709--60726764	22	2.6	22	83	5	62	51	0	0	48	1.00
60732743--60732827	44	1.9	44	100	0	170	31	16	15	36	1.90
60740285--60740355	35	2.0	36	97	2	135	40	0	33	25	1.56
60745069--60745172	50	2.1	49	81	11	126	44	0	13	41	1.50
60749445--60749553	54	2.0	54	96	0	200	33	11	17	37	1.86
60755817--60755859	22	2.0	22	86	9	61	16	13	16	53	1.73
60758682--60758748	30	2.2	31	78	7	75	23	23	10	41	1.85
60758734--60758808	30	2.5	29	87	8	107	26	29	13	30	1.94
60768275--60768358	28	3.0	28	87	1	123	46	29	3	20	1.67
60769035--60769128	48	2.0	48	95	0	170	29	17	8	44	1.78
60771355--60771386	15	2.0	17	88	11	50	25	0	31	43	1.55
60775301--60775466	30	5.5	30	83	0	206	22	25	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60775301--60775491	90	2.1	89	87	0	265	24	26	10	38	1.88
60787719--60787767	20	2.7	18	77	22	57	51	6	0	42	1.27
60789257--60789287	16	1.9	16	93	0	53	67	6	12	12	1.40
60789637--60789698	10	6.1	10	83	12	74	22	8	3	66	1.33
60790587--60790618	12	2.7	12	95	0	55	25	12	0	62	1.30
60799669--60799737	24	2.9	23	77	18	61	46	0	2	50	1.16
60799879--60799966	3	30.0	3	70	13	58	36	4	1	57	1.26
60800242--60800288	13	3.5	14	80	5	53	76	2	8	12	1.09
60801668--60801736	24	2.9	23	77	18	61	46	0	2	50	1.16
60801878--60801965	3	30.0	3	70	13	58	36	4	1	57	1.26
60802241--60802287	13	3.5	14	80	5	53	76	2	8	12	1.09
60803359--60803383	12	2.1	12	100	0	50	16	24	20	40	1.91
60803361--60803473	45	2.5	45	91	2	174	21	18	19	40	1.91
60803355--60803482	45	2.6	48	77	16	129	21	17	18	42	1.90
60811646--60811691	20	2.2	21	84	3	58	50	0	0	50	1.00
60811633--60811685	24	2.3	23	87	9	72	49	0	1	49	1.12
60811644--60811718	27	3.0	25	73	21	68	52	1	0	46	1.09
60811842--60811898	20	2.8	20	79	15	62	42	3	1	52	1.28
60812626--60812668	22	2.0	22	85	0	59	55	4	13	25	1.58
60812906--60812991	42	2.0	42	100	0	172	36	0	23	40	1.55
60813063--60813130	21	3.3	21	68	15	61	32	8	20	38	1.84
60813047--60813130	40	2.1	39	84	8	107	32	7	21	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60815118--60815161	10	4.5	10	81	13	56	59	0	0	40	0.98
60815125--60815184	21	2.8	20	80	9	66	61	1	1	35	1.16
60815148--60815192	22	2.1	21	83	4	54	68	2	2	26	1.12
60815748--60815798	18	2.9	17	80	16	59	23	1	0	74	0.92
60835266--60835295	5	6.0	5	96	0	51	76	0	20	3	0.92
60835360--60835392	17	2.0	17	88	5	50	33	6	39	21	1.78
60835704--60835734	2	16.0	2	93	6	55	48	0	0	51	1.00
60835936--60836000	30	2.1	32	88	5	98	47	4	1	46	1.32
60838382--60838423	15	2.7	16	82	14	52	45	0	2	52	1.13
60838373--60838414	15	2.9	15	82	10	52	47	0	0	52	1.00
60838568--60838658	45	2.0	44	85	2	119	35	28	5	30	1.80
60838639--60838706	16	4.2	16	94	0	118	35	36	0	27	1.58
60839260--60839306	20	2.4	19	86	10	60	34	6	0	59	1.23
60839899--60839945	23	2.0	23	100	0	94	40	21	17	21	1.91
60860247--60860362	43	2.7	42	84	4	135	20	18	29	31	1.97
60860332--60860431	51	2.0	51	81	0	119	22	17	28	33	1.96
60862886--60862933	25	1.9	25	83	8	62	18	2	4	75	1.07
60866437--60866474	6	6.3	6	88	11	60	15	0	2	81	0.80
60867950--60867983	14	2.4	14	95	0	59	38	29	5	26	1.80
60876684--60876756	33	2.3	32	81	6	96	28	21	27	21	1.99
60884303--60884332	16	1.9	15	93	6	51	73	10	0	16	1.09
60884940--60885279	87	3.9	87	99	0	671	35	15	12	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60889630--60889656	11	2.5	11	100	0	54	40	18	18	22	1.91
60892853--60892877	12	2.1	12	100	0	50	68	8	8	16	1.38
60895396--60895436	21	2.0	21	90	0	64	19	29	21	29	1.98
60903765--60903827	29	2.2	29	82	0	81	34	19	23	22	1.96
60903773--60903841	29	2.4	29	80	0	84	28	18	30	21	1.97
60906110--60906188	39	2.0	40	95	2	142	24	15	10	50	1.74
60910258--60910303	18	2.8	18	84	15	64	0	30	41	28	1.56
60923068--60923120	25	2.1	26	82	3	63	32	1	3	62	1.24
60927869--60927987	58	2.1	58	93	0	202	44	21	16	17	1.87
60933639--60933682	21	2.2	20	87	4	61	63	0	6	29	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186