genome.fa.s20.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  65  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20435690--20435771	28	2.9	28	94	0	137	23	20	36	19	1.95
20441526--20441558	17	1.9	18	88	11	52	51	27	0	21	1.48
20445523--20445564	22	1.9	22	90	0	66	38	23	4	33	1.76
20449152--20449184	17	1.9	18	88	11	52	51	27	0	21	1.48
20449590--20449645	27	2.1	27	96	0	103	41	14	7	37	1.73
20460351--20460384	15	2.3	15	89	0	50	17	14	11	55	1.68
20468549--20468850	152	2.0	153	90	3	475	31	8	13	46	1.74
20470500--20470657	78	2.0	77	87	1	226	37	12	13	36	1.83
20470865--20471022	83	1.9	85	85	5	223	28	13	14	43	1.83
20474370--20474395	13	2.0	13	100	0	52	38	0	15	46	1.46
20475991--20476081	47	1.9	47	95	0	164	27	9	14	48	1.75
20477339--20477424	31	2.8	31	94	1	156	24	26	17	31	1.97
20477642--20477712	26	2.8	26	89	4	101	29	22	22	25	1.99
20479595--20479731	45	3.1	45	89	4	199	25	23	25	25	2.00
20483165--20483197	16	2.1	16	94	0	57	24	6	24	45	1.75
20486169--20486209	21	2.0	21	90	0	64	17	7	0	75	1.02
20493259--20493305	16	2.9	17	76	20	55	34	31	8	25	1.86
20494196--20494234	15	2.6	16	92	8	64	46	5	0	48	1.24
20495199--20495283	43	2.0	43	97	0	161	37	18	10	32	1.85
20497959--20498038	38	2.1	38	86	6	110	26	30	18	25	1.98
20498210--20498630	47	9.0	47	100	0	842	29	27	8	33	1.87
20510593--20510646	21	2.5	21	81	3	63	18	37	31	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20518086--20518138	24	2.2	24	96	0	97	54	18	5	20	1.64
20521155--20521198	21	2.1	21	100	0	88	38	22	13	25	1.91
20521600--20521701	50	2.0	50	96	0	186	25	20	16	37	1.93
20524730--20524891	43	3.8	42	77	9	159	30	25	14	29	1.95
20527519--20527743	47	4.8	49	74	16	190	27	19	29	23	1.98
20527519--20527743	94	2.4	93	88	3	326	27	19	29	23	1.98
20529946--20530210	40	6.7	40	89	4	349	25	28	21	24	1.99
20529946--20530210	119	2.2	121	85	3	367	25	28	21	24	1.99
20561801--20561827	8	3.4	8	100	0	54	25	0	0	74	0.83
20562982--20563102	43	2.8	42	85	6	163	23	17	24	33	1.96
20562977--20563143	43	3.9	43	78	6	151	28	14	23	32	1.94
20572719--20572802	42	2.0	42	100	0	168	30	14	9	45	1.77
20584434--20584541	15	7.2	15	69	12	87	25	23	7	43	1.79
20584424--20584547	30	4.1	30	95	1	212	25	25	6	42	1.78
20589116--20589239	30	4.1	30	91	1	194	26	23	6	43	1.78
20589126--20589233	15	7.2	15	69	12	78	26	21	7	44	1.78
20596490--20596560	34	2.1	34	97	0	133	26	22	12	38	1.90
20599098--20599158	31	2.0	31	90	0	95	49	8	8	34	1.62
20600408--20600434	2	13.5	2	100	0	54	51	0	0	48	1.00
20600876--20601020	74	2.0	74	81	2	175	44	2	7	44	1.46
20600993--20601834	420	2.0	420	99	0	1675	39	9	12	38	1.75
20602059--20602111	15	3.5	15	85	10	72	47	0	5	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20602184--20602223	4	10.0	4	100	0	80	75	0	25	0	0.81
20613674--20613704	4	7.8	4	92	0	53	25	3	0	70	1.02
20640358--20640528	44	3.9	44	76	4	159	30	18	20	29	1.97
20640358--20640765	45	8.9	45	72	9	236	31	16	22	29	1.96
20640583--20640765	96	1.9	96	83	0	240	29	16	25	28	1.97
20640583--20640805	96	2.3	96	81	1	232	29	17	23	29	1.97
20642677--20642707	4	7.8	4	92	0	53	25	3	0	70	1.02
20648105--20648155	26	2.0	26	100	0	102	35	29	7	27	1.85
20649560--20649605	16	2.9	16	87	12	69	8	21	17	52	1.71
20654503--20654580	23	3.2	24	76	8	79	35	16	23	24	1.95
20654503--20654580	24	3.3	23	77	12	77	35	16	23	24	1.95
20661100--20661222	66	1.9	66	81	5	151	25	25	26	23	2.00
20662224--20662329	24	4.3	23	78	10	88	32	17	26	23	1.97
20670118--20670148	3	10.3	3	100	0	62	67	0	0	32	0.91
20681293--20681448	43	3.6	42	76	14	140	30	25	18	25	1.98
20681290--20681451	86	1.9	85	82	11	206	32	24	17	25	1.97
20686705--20686751	4	10.8	4	82	17	58	27	0	0	72	0.85
20686705--20686751	18	2.6	17	87	9	67	27	0	0	72	0.85
20696381--20696452	5	14.0	5	81	18	78	77	1	0	20	0.84
20696369--20696449	20	4.3	19	77	16	87	75	2	0	22	0.92
20696369--20696454	28	3.1	28	75	19	90	74	2	0	23	0.93
20699810--20699888	39	2.0	39	97	0	149	36	6	27	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20708207--20708366	38	4.2	38	83	4	180	21	20	25	32	1.97
20708359--20708483	45	2.8	45	88	2	189	19	23	29	28	1.98
20708362--20708526	45	3.7	45	83	4	140	22	23	29	24	1.99
20713421--20713555	43	3.1	44	83	6	184	24	17	29	28	1.97
20713438--20713555	45	2.7	43	84	6	166	26	17	28	27	1.98
20713825--20714060	38	6.2	38	91	2	323	22	22	25	30	1.99
20714053--20714176	45	2.8	45	88	2	187	20	22	28	28	1.99
20715538--20715594	30	1.9	30	85	0	78	26	26	26	21	1.99
20719414--20719986	286	2.0	286	100	0	1146	33	20	12	32	1.90
20733335--20733389	29	1.9	28	88	3	83	32	25	20	21	1.97
20734918--20734979	27	2.3	27	91	0	97	37	9	24	29	1.87
20735173--20735246	27	2.7	27	76	0	76	43	10	24	21	1.84
20736733--20737003	46	5.8	47	72	14	170	25	18	30	25	1.97
20743823--20743894	35	2.1	35	100	0	144	27	11	19	41	1.85
20744055--20744111	30	1.9	30	88	0	87	33	15	24	26	1.95
20744456--20744769	46	6.6	48	73	13	142	27	18	30	24	1.98
20747764--20747815	11	4.8	10	77	15	50	15	1	3	78	0.98
20747759--20747825	28	2.3	30	84	5	84	16	7	4	71	1.25
20766023--20766448	67	6.4	67	75	6	339	36	15	22	25	1.94
20766019--20766455	134	3.3	134	80	5	404	36	15	22	25	1.94
20766474--20766581	54	2.0	54	80	3	119	35	12	25	26	1.91
20768440--20768548	28	4.0	27	85	8	141	26	14	26	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20768412--20768538	56	2.2	57	86	6	170	26	14	27	30	1.95
20772411--20772440	15	1.9	16	93	6	53	36	0	20	43	1.52
20774015--20774044	15	2.0	15	93	0	51	30	23	33	13	1.93
20774020--20774051	15	2.1	15	94	0	55	31	28	28	12	1.93
20786179--20786311	40	3.3	40	86	4	180	24	27	24	24	2.00
20794546--20794597	23	2.3	23	100	0	104	34	28	9	26	1.88
20802846--20802911	21	3.3	21	64	20	59	25	42	6	25	1.78
20802842--20802921	39	2.1	39	100	0	160	30	37	5	27	1.78
20814842--20814893	24	2.2	24	82	0	59	25	25	3	46	1.70
20816258--20816314	28	2.0	30	82	6	73	36	8	5	49	1.57
20816412--20816475	29	2.2	28	81	10	67	42	4	7	45	1.54
20817111--20817168	29	2.0	29	100	0	116	24	0	27	48	1.51
20820308--20820693	196	2.0	195	96	0	718	23	19	18	39	1.92
20826010--20826116	54	2.0	54	81	3	126	48	30	1	18	1.59
20826241--20826288	7	6.7	7	80	4	51	22	2	27	47	1.62
20826241--20826291	15	3.5	15	81	2	59	21	1	29	47	1.62
20826574--20826603	16	1.9	16	93	6	53	20	0	40	40	1.52
20826649--20826686	7	5.3	7	90	3	58	15	0	55	28	1.41
20826789--20826832	16	2.6	17	82	7	54	52	2	2	43	1.26
20826963--20826994	15	2.1	16	94	5	57	25	0	0	75	0.81
20827120--20827551	116	3.7	115	81	4	519	27	13	26	32	1.94
20830337--20830515	52	3.4	52	95	0	331	49	17	1	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20830427--20830509	9	9.4	9	75	7	64	49	19	1	30	1.56
20830337--20830590	61	4.5	60	76	13	220	47	17	1	33	1.59
20830332--20830566	52	4.3	52	89	4	326	48	17	1	32	1.57
20832364--20832389	12	2.2	12	100	0	52	34	7	26	30	1.85
20835705--20835737	13	2.5	13	95	0	57	36	3	6	54	1.41
20836118--20836157	21	1.9	21	89	0	62	30	17	50	2	1.59
20836540--20836653	43	2.7	43	78	0	138	32	25	16	25	1.96
20840742--20841264	132	4.0	131	81	4	525	31	24	17	26	1.97
20840742--20841147	198	2.1	197	79	6	419	31	25	17	25	1.97
20840741--20841275	66	8.1	66	73	4	380	31	25	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186