genome.fa.s20.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  32  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9569844--9569906	22	2.9	22	90	2	101	26	3	46	23	1.68
9569853--9569910	7	8.1	7	73	3	53	22	3	48	25	1.66
9569936--9569964	14	2.1	14	100	0	58	20	0	31	48	1.50
9569931--9570048	21	5.5	21	69	10	78	22	0	33	44	1.54
9569950--9570019	28	2.5	28	86	6	88	22	0	32	44	1.53
9569967--9570048	36	2.3	36	84	0	110	23	0	35	41	1.55
9570283--9570625	67	5.0	67	93	3	544	52	9	10	27	1.67
9570755--9570798	18	2.4	18	88	7	63	22	38	0	38	1.55
9575005--9575038	17	1.9	18	94	5	61	35	11	29	23	1.90
9575041--9575513	236	2.0	236	100	0	946	35	5	9	49	1.59
9575584--9575725	43	3.3	43	92	0	230	24	17	30	26	1.97
9577378--9577406	15	1.9	15	100	0	58	44	0	13	41	1.44
9577376--9577418	15	3.2	13	78	18	52	37	0	13	48	1.43
9577431--9577478	20	2.5	20	86	10	64	25	6	2	66	1.26
9578025--9578061	19	1.9	19	100	0	74	43	29	10	16	1.82
9582599--9582648	10	5.0	10	90	9	84	20	8	2	70	1.23
9583308--9583341	18	1.9	18	94	5	61	26	11	5	55	1.58
9586728--9586766	21	1.9	20	84	5	51	53	10	5	30	1.56
9594689--9595064	188	2.0	188	100	0	752	20	19	22	36	1.95
9595079--9595107	12	2.5	12	94	5	51	72	0	0	27	0.85
9599822--9599859	19	2.0	19	100	0	76	42	10	15	31	1.81
9603540--9603578	20	1.9	20	84	5	51	7	23	15	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9607954--9608007	24	2.2	24	83	6	63	46	7	0	46	1.31
9608090--9608139	13	3.7	13	81	5	55	36	4	0	60	1.16
9608158--9608215	20	2.7	23	71	20	61	41	5	0	53	1.23
9608158--9608216	24	2.4	25	80	5	66	40	5	0	54	1.23
9608189--9608261	22	3.5	19	68	17	56	30	4	2	63	1.27
9608722--9608785	34	1.9	34	90	3	103	18	7	10	62	1.51
9608722--9608798	34	2.3	33	86	2	100	22	7	9	61	1.52
9612265--9612314	15	3.5	15	82	15	61	24	24	10	42	1.85
9620329--9620901	210	2.7	210	93	1	977	29	17	21	30	1.97
9622874--9622927	24	2.2	25	86	6	74	44	7	0	48	1.31
9623010--9623055	16	3.0	15	90	6	67	32	2	0	65	1.05
9622996--9623185	21	8.7	21	68	24	67	32	3	3	60	1.30
9623081--9623139	14	3.9	15	72	19	52	42	3	0	54	1.17
9623090--9623141	24	2.2	24	85	0	68	40	3	0	55	1.18
9623096--9623143	24	2.0	24	91	0	78	37	4	0	58	1.18
9623646--9623723	34	2.3	34	86	0	102	21	11	7	58	1.57
9625247--9625284	19	2.0	19	100	0	76	42	10	15	31	1.81
9629156--9629231	27	2.8	27	84	7	100	36	23	23	15	1.94
9635103--9635144	20	2.1	20	90	0	66	42	11	0	45	1.41
9643120--9643166	3	15.7	3	79	16	53	36	0	2	61	1.08
9644220--9644308	23	3.9	23	92	0	124	8	4	35	50	1.54
9651295--9651321	13	2.1	13	100	0	54	55	7	0	37	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9651306--9651339	9	3.9	9	88	7	52	58	5	2	32	1.37
9651306--9651339	17	2.0	17	94	0	59	58	5	2	32	1.37
9653754--9653798	6	7.5	6	87	0	63	80	0	6	13	0.91
9657886--9658207	161	2.0	161	100	0	644	24	16	19	40	1.91
9659319--9659345	13	2.1	13	100	0	54	55	7	0	37	1.28
9659330--9659363	9	3.9	9	88	7	52	58	5	2	32	1.37
9659330--9659363	17	2.0	17	94	0	59	58	5	2	32	1.37
9671072--9671164	46	2.0	46	87	0	132	20	22	15	41	1.89
9672857--9672904	11	4.2	11	79	10	51	62	2	0	35	1.07
9674483--9674540	30	1.9	30	85	0	80	15	29	34	20	1.94
9676725--9676763	12	3.4	11	86	10	51	82	2	12	2	0.89
9676731--9676757	6	4.5	6	100	0	54	85	0	14	0	0.61
9676725--9676763	11	3.5	11	86	6	51	82	2	12	2	0.89
9677986--9678040	28	2.0	27	82	3	65	45	16	7	30	1.74
9678002--9678197	18	10.3	18	68	11	106	41	14	9	33	1.79
9687787--9687839	27	1.9	28	84	3	72	0	32	3	64	1.12
9688151--9688219	35	2.1	31	84	10	84	47	4	0	47	1.21
9691175--9691208	16	2.1	17	88	5	52	17	20	14	47	1.83
9693608--9693635	7	4.0	7	100	0	56	71	0	0	28	0.86
9708831--9708899	17	4.1	16	74	23	54	47	1	2	47	1.25
9711470--9711512	20	2.2	20	86	0	59	9	16	23	51	1.73
9712549--9712594	22	2.1	22	100	0	92	41	21	6	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9713841--9713947	32	3.6	33	67	26	103	42	6	3	47	1.47
9713871--9713914	23	2.0	22	86	4	61	36	9	0	54	1.32
9713843--9713969	55	2.3	55	100	0	254	40	7	3	48	1.46
9713926--9713969	23	2.0	22	86	4	61	36	9	0	54	1.32
9715328--9715379	24	2.2	24	89	0	77	55	9	1	32	1.43
9716804--9716855	24	2.2	24	89	0	77	55	9	1	32	1.43
9718867--9718918	24	2.2	24	89	0	77	55	9	1	32	1.43
9720568--9720619	24	2.2	24	89	0	77	55	9	1	32	1.43
9732950--9732994	23	2.0	23	82	8	56	37	8	13	40	1.76
9734615--9734648	11	2.9	12	86	8	52	61	11	2	23	1.43
9735096--9735146	20	2.5	20	78	15	59	66	1	3	27	1.20
9737574--9737685	56	2.0	56	100	0	224	33	16	35	14	1.88
9756314--9756352	16	2.4	17	86	4	53	38	0	0	61	0.96
9756927--9756984	23	2.6	23	80	2	64	48	0	1	50	1.11
9764038--9764088	23	2.2	23	100	0	102	35	11	17	35	1.87
9766572--9766776	69	3.0	68	78	4	216	39	7	20	32	1.81
9766866--9766975	51	2.2	51	81	6	125	46	7	17	29	1.74
9767112--9767184	36	2.0	36	100	0	146	41	0	10	47	1.39
9776508--9776563	18	3.3	18	68	25	50	58	1	0	39	1.08
9782349--9782382	12	2.8	12	90	0	50	67	0	0	32	0.91
9784304--9784346	22	2.0	22	85	0	59	67	2	2	27	1.15
9790338--9790381	20	2.3	19	81	14	54	75	4	6	13	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9800632--9800657	7	3.7	7	100	0	52	15	11	0	73	1.11
9802836--9802868	14	2.4	14	100	0	66	12	0	24	63	1.28
9810108--9810313	108	1.9	108	92	4	344	32	12	24	30	1.92
9810109--9810338	108	2.1	108	88	3	338	33	13	24	28	1.93
9810422--9810484	29	2.2	29	94	0	108	15	9	26	47	1.76
9813899--9813971	36	2.0	36	100	0	146	52	10	19	17	1.74
9816918--9816980	6	10.5	6	85	0	81	76	3	1	19	1.01
9818638--9818753	5	23.2	5	67	18	55	72	1	5	20	1.13
9822560--9822601	12	3.4	12	80	12	50	71	2	2	23	1.10
9829735--9829817	33	2.5	33	84	1	105	25	26	33	14	1.94
9840039--9840092	20	2.6	21	82	11	67	35	0	7	57	1.27
9840078--9840126	3	17.3	3	76	19	52	28	2	0	69	1.00
9840082--9840120	11	3.5	11	92	0	69	28	2	0	69	1.02
9840078--9840119	19	2.2	19	87	8	59	26	2	0	71	0.98
9842273--9842385	23	4.8	22	71	20	86	15	28	22	33	1.95
9842273--9842390	48	2.5	48	75	15	120	17	27	21	33	1.96
9856746--9856778	17	1.9	17	88	11	50	36	3	0	60	1.12
9863137--9863177	21	2.0	21	85	0	55	26	0	4	68	1.10
9864744--9864795	21	2.6	19	74	14	52	69	0	7	23	1.14
9872079--9872105	12	2.2	12	100	0	54	62	14	0	22	1.31
9872492--9872524	3	11.0	3	93	0	57	63	0	3	33	1.10
9872481--9872524	15	2.9	15	89	0	61	59	4	4	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9872583--9872621	15	2.8	13	85	14	60	64	0	5	30	1.15
9874438--9874470	15	2.2	15	94	0	57	69	3	6	21	1.24
9874461--9874668	77	2.7	77	95	3	364	31	23	17	28	1.97
9874616--9874869	89	2.9	86	87	4	330	36	20	17	25	1.94
9874768--9874802	13	2.6	14	86	9	54	65	2	11	20	1.37
9874785--9875242	75	6.2	72	81	7	501	34	20	17	28	1.95
9874823--9875230	146	2.8	146	84	6	538	32	21	16	29	1.96
9887048--9887139	27	3.2	28	80	9	98	53	5	6	34	1.50
9887511--9887556	21	2.2	21	88	7	67	60	4	2	32	1.28
9892480--9892512	17	1.9	17	93	0	57	21	6	0	72	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186