genome.fa.s20.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  166  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55286409--55286536	28	4.5	28	85	2	157	34	25	11	28	1.91
55286409--55286536	29	4.5	29	86	2	154	34	25	11	28	1.91
55286408--55286536	57	2.3	57	83	2	170	34	25	11	28	1.91
55293977--55294075	28	3.5	28	88	1	135	32	25	13	29	1.93
55295795--55295866	27	2.6	27	93	2	117	31	26	12	29	1.93
55295794--55295892	27	3.5	28	86	2	110	31	28	13	27	1.94
55300927--55300983	13	4.3	13	79	16	64	84	0	7	8	0.79
55300924--55300985	15	3.6	17	77	18	67	83	0	6	9	0.79
55300925--55300985	26	2.3	27	88	5	88	83	0	6	9	0.80
55301636--55301727	46	2.0	46	97	0	175	35	15	28	20	1.93
55301907--55302270	44	8.3	43	71	12	247	32	17	24	25	1.97
55301907--55302320	88	4.7	87	71	11	274	32	17	24	26	1.97
55301921--55302321	132	3.0	132	94	0	694	30	17	24	27	1.97
55302390--55302896	205	2.5	205	91	0	834	32	18	20	29	1.96
55303522--55303581	17	3.5	17	74	21	63	33	1	0	65	1.03
55303523--55303581	16	3.5	16	76	23	59	33	1	0	64	1.04
55303558--55303607	26	1.9	26	83	0	64	36	4	0	60	1.16
55307300--55307373	16	4.7	15	70	20	53	58	2	5	33	1.35
55307506--55307657	16	9.5	15	67	23	62	59	1	3	34	1.24
55307517--55307598	14	6.2	13	72	14	53	60	2	3	32	1.27
55307607--55307666	21	2.9	20	80	7	66	63	1	3	31	1.20
55307639--55307688	20	2.4	21	83	9	68	64	2	2	32	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55309715--55309756	5	8.2	5	91	2	57	38	0	23	38	1.55
55310175--55310391	45	5.0	45	80	7	241	20	16	19	43	1.88
55310174--55310349	84	2.1	84	89	2	273	21	15	18	44	1.86
55310174--55310391	84	2.6	81	81	12	210	20	16	19	44	1.87
55310378--55310437	6	10.0	6	75	7	59	18	18	16	46	1.84
55311485--55311583	27	3.7	26	85	6	135	33	23	25	18	1.97
55313204--55313311	26	4.2	26	93	0	189	36	24	7	32	1.83
55313810--55313848	18	2.1	19	85	4	53	46	0	23	30	1.53
55315271--55315309	20	2.0	20	85	10	53	33	0	0	66	0.92
55317964--55318009	24	1.9	24	90	0	74	73	2	0	23	0.94
55318006--55318107	30	3.4	29	77	5	105	28	23	4	43	1.74
55318188--55318327	70	2.0	70	98	0	271	20	33	19	27	1.96
55318415--55318457	14	2.8	15	76	16	52	67	11	6	13	1.41
55319023--55319169	74	2.0	74	95	0	267	32	19	17	30	1.95
55319281--55319341	17	3.8	17	78	18	60	36	6	3	54	1.43
55319729--55319850	61	2.0	61	95	0	217	31	18	18	31	1.95
55331731--55331761	14	2.2	14	94	0	53	29	9	9	51	1.66
55331672--55332237	87	6.7	86	78	10	518	29	16	18	35	1.93
55331681--55332237	172	3.3	170	80	9	580	29	16	18	35	1.93
55331672--55332166	259	1.9	255	83	7	642	29	15	18	35	1.92
55332019--55332282	80	3.4	74	80	7	264	32	16	17	33	1.93
55332000--55332282	75	3.7	73	78	10	275	31	15	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55332511--55332627	30	4.0	29	81	6	128	30	23	0	44	1.60
55333136--55333284	74	2.0	74	100	0	298	18	8	29	44	1.78
55333723--55333783	17	3.8	17	78	18	60	36	6	3	54	1.43
55333868--55333900	17	2.0	17	94	5	59	39	6	0	54	1.25
55334877--55334908	16	2.0	16	93	0	55	34	18	0	46	1.49
55335111--55335252	50	2.8	50	78	4	151	29	25	19	26	1.98
55335600--55335646	19	2.3	20	79	17	53	48	14	2	34	1.56
55337950--55338050	9	11.1	9	71	18	50	41	0	1	55	1.18
55337971--55338036	32	2.2	29	83	8	78	37	0	1	60	1.06
55338017--55338053	19	2.0	19	89	5	58	43	0	0	56	0.99
55337991--55338072	34	2.4	33	80	9	85	40	0	3	56	1.17
55340744--55340794	19	2.9	17	81	13	59	37	9	17	35	1.83
55340754--55340796	19	2.1	21	91	8	72	37	9	18	34	1.83
55342913--55342963	7	7.9	7	80	12	56	84	0	15	0	0.63
55342915--55342962	13	3.8	13	86	2	62	83	0	16	0	0.65
55342914--55342965	18	2.8	19	91	5	81	84	0	15	0	0.62
55343914--55344656	84	8.9	84	91	3	1161	30	22	22	24	1.99
55348388--55348457	33	2.1	33	86	0	95	24	4	24	47	1.70
55361404--55361486	42	2.0	42	97	0	157	34	16	16	31	1.92
55364180--55364252	35	2.1	35	97	0	137	56	10	16	16	1.67
55376005--55376103	28	3.5	29	91	5	150	39	13	0	47	1.42
55376137--55376220	27	3.1	27	91	1	134	25	29	27	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55376710--55376770	19	3.3	19	77	9	63	49	0	8	42	1.32
55377269--55377325	27	2.2	26	90	3	87	17	26	29	26	1.97
55377368--55377468	29	3.5	29	90	6	161	49	0	11	38	1.40
55381893--55381917	2	12.5	2	100	0	50	48	0	0	52	1.00
55383220--55383923	88	7.9	88	90	2	1038	29	18	25	26	1.98
55383265--55383922	43	14.9	45	64	13	215	29	18	25	27	1.98
55386043--55386099	16	3.6	16	90	0	78	29	0	35	35	1.58
55386070--55386112	16	2.7	16	85	0	59	37	2	32	27	1.70
55386043--55386112	32	2.2	32	84	0	86	31	1	32	34	1.67
55386345--55386379	18	2.0	17	88	5	52	54	0	0	45	0.99
55386360--55386547	61	3.1	61	70	14	199	48	6	1	42	1.39
55386444--55386495	15	3.6	15	80	12	56	53	1	0	44	1.11
55386328--55386620	120	2.4	121	94	1	509	49	5	2	42	1.38
55386617--55386848	91	2.5	92	84	4	276	48	5	2	44	1.37
55386661--55386721	28	2.2	28	85	5	81	50	3	0	45	1.17
55386668--55386811	47	3.1	46	65	23	113	49	4	1	44	1.32
55386636--55386841	91	2.3	91	91	0	331	47	4	2	45	1.37
55386661--55386803	44	3.2	43	68	16	119	48	4	1	46	1.30
55386686--55386824	47	3.0	47	68	17	137	49	5	1	43	1.33
55394931--55394963	15	2.2	15	94	0	57	0	27	0	72	0.85
55399524--55399712	101	1.9	101	100	0	378	26	15	16	41	1.88
55399937--55399981	24	1.9	23	81	4	54	13	11	13	62	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55401559--55401631	21	3.6	21	68	7	69	42	0	26	31	1.56
55411221--55411262	17	2.4	18	92	4	68	26	23	9	40	1.85
55419003--55419083	36	2.2	37	78	14	87	48	1	12	38	1.49
55419610--55419656	23	2.0	24	87	4	69	38	17	6	38	1.75
55419633--55419687	19	2.7	21	83	11	87	36	14	9	40	1.78
55419610--55419675	23	3.0	21	75	20	55	37	16	6	39	1.74
55421524--55421803	46	6.6	44	80	16	317	28	22	14	35	1.93
55421613--55421767	36	4.0	36	79	15	175	28	20	14	36	1.92
55421567--55421803	82	2.9	82	96	0	429	28	21	13	35	1.92
55424991--55425029	19	2.1	19	100	0	78	35	25	7	30	1.84
55427463--55427590	43	3.0	42	84	2	157	32	25	17	25	1.97
55436209--55436354	37	4.0	37	93	1	242	24	21	16	36	1.94
55436318--55436586	46	5.6	46	84	10	340	28	22	14	34	1.93
55436361--55436580	52	4.3	52	85	8	299	27	22	14	35	1.93
55436318--55436586	98	2.7	98	93	0	457	28	22	14	34	1.93
55439141--55439178	15	2.5	15	100	0	76	15	42	31	10	1.81
55442253--55442304	21	2.5	21	80	0	68	40	26	5	26	1.79
55442697--55442733	10	3.5	11	85	14	51	56	0	2	40	1.13
55461362--55461397	17	2.2	17	95	5	65	11	5	33	50	1.61
55461515--55461572	27	2.1	27	87	6	82	10	5	13	70	1.31
55462916--55462959	10	4.5	10	77	5	54	63	0	2	34	1.07
55463296--55463334	21	1.9	21	89	5	62	33	0	2	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55463295--55463338	20	2.3	19	81	14	54	34	0	2	63	1.07
55466504--55466555	26	2.0	26	100	0	104	53	15	11	19	1.71
55467004--55467045	18	2.3	18	83	0	57	7	33	11	47	1.68
55467248--55467273	5	5.2	5	100	0	52	19	0	0	80	0.71
55470202--55470345	43	3.5	40	78	12	123	41	21	15	20	1.90
55470280--55470366	43	2.0	43	93	0	147	42	21	17	18	1.89
55470312--55470422	56	2.0	56	85	3	152	41	23	14	20	1.89
55471199--55471250	16	3.2	16	94	0	86	28	0	36	34	1.58
55471231--55471325	45	2.1	44	88	1	136	34	5	27	32	1.79
55471463--55471517	25	2.2	25	84	9	69	52	1	0	45	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186