genome.fa.s20.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  176  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58463377--58463451	26	2.9	26	95	0	132	4	4	37	54	1.38
58463390--58463440	10	5.7	9	78	17	52	3	1	39	54	1.30
58463390--58463451	10	7.1	9	76	20	51	3	3	37	56	1.32
58464684--58464709	11	2.4	11	100	0	52	30	0	15	53	1.42
58472642--58472677	16	2.3	16	90	4	56	58	5	13	22	1.56
58474570--58474669	50	2.0	50	96	0	182	33	13	19	35	1.90
58474722--58474760	20	2.0	20	89	0	60	30	2	2	64	1.21
58482609--58482921	158	2.0	156	95	1	563	41	13	19	25	1.88
58484356--58484395	21	1.9	21	94	0	71	25	27	32	15	1.95
58484656--58485340	126	5.5	125	87	5	908	30	15	23	30	1.95
58484656--58485340	251	2.8	249	87	4	915	30	15	23	30	1.95
58485087--58485307	118	1.9	116	88	3	336	33	14	21	30	1.93
58488514--58488839	21	15.0	22	78	5	317	25	1	26	46	1.62
58488514--58488936	43	9.6	43	75	10	304	25	1	26	46	1.62
58488514--58488831	64	4.9	64	77	6	311	25	1	26	45	1.62
58488792--58488906	37	3.1	37	71	21	123	23	1	27	46	1.62
58488804--58488863	7	8.1	7	75	14	50	20	3	35	41	1.68
58488750--58488913	74	2.2	74	87	1	240	24	1	28	46	1.60
58488856--58488936	22	3.7	22	78	3	92	25	0	25	48	1.52
58488868--58488935	21	3.2	21	87	2	100	25	0	25	50	1.50
58490406--58490443	20	1.9	20	84	10	51	57	7	0	34	1.28
58491735--58491783	21	2.5	20	83	6	55	32	6	8	53	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58500847--58500878	16	2.0	16	93	0	55	21	12	28	37	1.90
58505232--58505423	28	6.8	27	76	9	154	20	10	5	62	1.48
58505232--58505395	87	1.9	85	81	7	197	20	10	6	62	1.49
58505240--58505423	56	3.2	55	81	7	199	21	11	5	61	1.49
58512665--58512708	22	2.0	22	82	8	54	38	0	2	59	1.10
58513045--58513096	16	3.2	16	94	0	95	26	0	34	38	1.57
58513312--58513366	15	3.4	16	80	16	53	50	1	0	47	1.11
58513332--58513366	18	2.0	17	88	5	52	54	0	0	45	0.99
58513452--58513486	18	2.0	17	88	5	52	54	0	0	45	0.99
58513347--58513537	61	3.2	60	67	20	155	48	5	2	43	1.38
58513310--58513593	120	2.4	120	90	2	446	48	4	1	44	1.34
58515677--58515729	27	2.0	27	85	7	72	37	9	11	41	1.73
58517660--58517708	25	2.0	25	84	8	64	48	0	4	46	1.20
58519354--58519532	43	4.2	43	89	0	234	29	30	17	22	1.97
58522838--58522885	23	2.0	24	84	8	62	27	6	8	58	1.51
58523444--58523521	7	11.0	7	83	1	66	34	44	0	20	1.52
58523433--58523523	21	4.2	21	81	9	94	37	42	0	19	1.52
58523467--58523544	21	3.7	21	85	1	84	39	38	0	21	1.54
58524215--58524251	7	5.1	7	87	6	56	45	29	0	24	1.53
58524208--58524256	14	3.3	15	82	8	64	48	28	0	22	1.50
58524735--58524774	21	1.9	21	89	0	62	37	37	0	25	1.56
58524911--58525066	41	3.8	41	87	0	222	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58525051--58525173	40	3.2	39	78	8	135	21	17	19	41	1.90
58526297--58526339	22	2.0	22	86	9	61	65	4	2	27	1.25
58536976--58537087	27	4.2	26	85	7	143	37	23	24	15	1.93
58536976--58537087	54	2.1	54	88	3	163	37	23	24	15	1.93
58538506--58538552	24	2.0	24	91	0	76	23	38	2	36	1.67
58540059--58540260	75	2.7	75	86	1	280	22	21	21	34	1.97
58540648--58540716	2	34.5	2	97	0	129	0	50	0	49	1.00
58542417--58542444	13	2.2	13	100	0	56	35	17	21	25	1.95
58546531--58546663	69	1.9	69	90	3	214	37	10	16	35	1.83
58547918--58548205	75	3.8	75	84	0	351	23	21	19	35	1.96
58547918--58548205	150	1.9	150	85	1	398	23	21	19	35	1.96
58550449--58550509	26	2.4	26	83	5	81	18	9	4	67	1.37
58550663--58550699	16	2.2	18	85	9	51	29	0	0	70	0.88
58551980--58552056	22	3.5	22	94	3	120	10	37	28	23	1.88
58556266--58556328	33	1.9	32	81	9	74	20	12	11	55	1.67
58557455--58557542	38	2.2	40	84	4	108	47	5	2	44	1.39
58559055--58559484	213	2.0	210	89	2	655	31	31	10	26	1.90
58565727--58565760	16	2.1	17	89	10	54	29	0	5	64	1.17
58566387--58566456	23	3.0	23	83	6	79	24	11	21	42	1.85
58567100--58567133	3	11.3	3	93	0	59	32	0	2	64	1.08
58567370--58567399	7	4.3	7	100	0	60	33	0	0	66	0.92
58569203--58569231	14	2.0	15	93	6	51	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58569390--58569426	18	2.1	18	100	0	74	43	0	0	56	0.99
58571583--58571615	17	2.0	17	94	5	59	36	15	0	48	1.45
58571890--58572133	46	5.3	46	83	3	285	20	23	14	41	1.89
58571890--58572133	93	2.6	92	83	3	312	20	23	14	41	1.89
58573931--58573980	21	2.5	20	84	9	75	46	4	0	50	1.20
58574078--58574149	29	2.5	27	72	18	65	45	4	0	50	1.21
58576012--58576050	11	3.6	11	80	19	55	76	5	17	0	0.96
58576003--58576050	15	2.9	17	87	9	64	77	4	18	0	0.93
58576009--58576058	21	2.4	21	96	0	91	78	4	18	0	0.91
58576003--58576055	21	2.3	24	78	18	76	79	3	16	0	0.88
58583842--58583884	18	2.4	18	92	0	68	20	20	11	46	1.82
58585907--58585945	17	2.4	16	87	8	53	15	20	0	64	1.30
58585934--58585967	17	2.0	18	88	11	54	11	17	0	70	1.16
58587023--58587056	17	2.0	17	94	0	59	61	0	5	32	1.20
58587028--58587061	17	2.1	17	88	5	52	61	0	2	35	1.11
58611650--58611676	7	3.9	7	100	0	54	74	0	14	11	1.08
58616058--58616107	27	2.0	26	84	11	68	40	0	2	58	1.10
58616055--58616118	26	2.5	25	78	9	67	43	0	1	54	1.09
58616045--58616115	25	2.7	26	78	10	81	40	0	1	57	1.07
58616417--58616479	4	15.5	4	72	21	51	74	0	23	1	0.90
58616422--58616472	9	5.6	9	76	19	52	74	0	23	1	0.92
58616417--58616479	19	3.1	19	75	20	56	74	0	23	1	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58616629--58616748	60	2.0	61	91	1	197	35	0	10	55	1.34
58616635--58616743	33	3.5	32	68	15	93	38	0	8	53	1.31
58618939--58618984	24	1.9	24	95	0	83	15	17	15	52	1.76
58619032--58619083	22	2.4	22	93	0	86	15	34	25	25	1.95
58621454--58621522	24	2.9	24	80	0	66	18	40	1	39	1.60
58625543--58625586	19	2.2	21	88	8	65	40	2	0	56	1.11
58626469--58626527	27	2.1	27	84	12	75	33	11	3	50	1.56
58633957--58634043	29	3.0	29	94	0	147	21	27	29	20	1.98
58635438--58635547	42	2.6	42	91	0	175	25	23	17	33	1.96
58642963--58643071	42	2.5	42	77	12	114	31	24	13	30	1.94
58644709--58644926	46	4.7	46	94	0	391	32	27	18	21	1.97
58647376--58647519	49	2.9	48	83	4	189	25	20	27	26	1.99
58653645--58653681	15	2.5	15	86	0	56	27	0	0	72	0.84
58657154--58657345	96	2.0	96	98	0	375	39	13	22	24	1.90
58659874--58659936	22	2.9	21	86	6	81	33	19	15	31	1.93
58662393--58662422	15	2.0	15	93	0	51	73	10	6	10	1.25
58663625--58663664	20	2.0	20	85	0	53	7	25	22	45	1.78
58666464--58666506	11	4.0	11	79	14	54	51	2	0	46	1.13
58666532--58666593	20	3.3	19	73	13	56	30	0	4	64	1.14
58667535--58667572	20	2.0	20	89	5	60	55	2	0	42	1.14
58667874--58667913	6	6.5	6	88	5	62	42	57	0	0	0.98
58667873--58667914	13	3.3	13	90	6	68	40	59	0	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58669565--58669595	6	5.2	6	100	0	62	32	0	35	32	1.58
58674483--58674517	18	1.9	18	94	0	61	65	2	0	31	1.07
58676506--58676739	117	2.0	117	91	1	380	34	18	11	35	1.87
58678577--58678606	13	2.3	13	100	0	60	46	0	13	40	1.43
58681186--58681214	8	3.6	8	100	0	58	37	0	0	62	0.96
58681237--58681272	5	7.4	5	93	6	65	41	0	0	58	0.98
58681961--58682073	5	22.8	5	98	1	219	40	0	0	59	0.97
58681237--58682761	801	1.9	801	97	0	2908	42	5	17	33	1.73
58683701--58683753	21	2.5	21	93	0	88	15	26	24	33	1.95
58683683--58683765	21	3.9	21	80	3	76	14	21	25	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186