genome.fa.s5.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  10  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2773911--2773957	18	2.6	18	82	0	67	31	0	2	65	1.04
2774112--2774159	24	1.9	24	83	8	60	33	2	12	52	1.51
2774373--2774412	3	13.3	3	100	0	80	67	0	0	32	0.91
2781243--2781272	14	2.1	14	100	0	60	33	6	23	36	1.81
2781597--2781636	6	6.7	6	100	0	80	67	0	0	32	0.91
2787431--2787455	2	12.5	2	100	0	50	48	0	0	52	1.00
2789619--2789671	27	2.0	26	82	10	63	24	24	22	28	2.00
2793793--2793882	44	2.0	44	89	0	135	22	2	21	54	1.56
2793869--2793980	47	2.4	47	83	5	129	20	5	17	56	1.61
2799640--2799701	22	2.8	21	78	9	70	56	1	0	41	1.09
2799650--2799714	28	2.2	31	78	15	75	55	3	0	41	1.15
2799666--2799721	30	1.9	30	85	7	80	55	5	0	39	1.23
2808448--2808518	30	2.4	31	86	6	94	30	4	4	60	1.35
2810758--2810806	24	2.0	24	88	4	71	30	0	0	69	0.89
2812262--2812442	51	3.5	51	88	3	274	31	25	13	29	1.94
2819476--2819656	51	3.5	51	92	0	308	32	24	13	29	1.94
2820807--2820980	87	2.0	87	86	2	242	41	13	10	34	1.79
2823486--2823586	19	5.2	20	74	9	66	64	0	5	28	1.23
2823486--2823520	11	3.3	11	92	4	54	74	0	5	20	1.02
2823459--2823539	10	8.2	10	76	12	60	67	1	2	28	1.11
2823474--2823559	9	8.9	10	72	12	54	62	1	3	32	1.19
2823467--2823546	9	8.6	9	80	11	65	67	1	3	27	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2823449--2823633	28	6.4	29	68	13	114	62	1	5	30	1.24
2823469--2823635	57	2.9	58	77	6	155	64	1	5	28	1.23
2824313--2824353	22	1.9	22	90	5	66	43	4	0	51	1.23
2828582--2828618	19	1.9	19	88	0	56	64	0	0	35	0.94
2829322--2829380	31	1.9	31	85	0	82	35	27	13	23	1.92
2829678--2830035	175	2.0	177	82	9	433	32	10	15	41	1.81
2837763--2838193	58	7.4	58	81	5	435	32	23	6	37	1.80
2837705--2838193	29	16.8	29	73	15	221	33	23	6	37	1.80
2837744--2838214	116	4.1	115	81	8	481	33	23	6	36	1.80
2837944--2838242	58	5.2	58	82	8	183	31	24	7	36	1.84
2843641--2843692	19	2.8	18	74	8	50	65	1	3	28	1.21
2857555--2857600	19	2.4	19	82	10	58	71	2	0	26	0.97
2859285--2859345	30	2.0	30	96	0	113	27	13	14	44	1.83
2860591--2860652	31	2.0	31	90	0	97	41	11	12	33	1.79
2867706--2867790	39	2.1	42	82	6	104	55	3	1	40	1.25
2869406--2869446	20	2.0	20	90	0	64	68	21	2	7	1.26
2869406--2869461	20	2.8	20	83	5	60	69	19	1	8	1.24
2869419--2869484	32	2.1	31	94	2	114	71	16	4	7	1.26
2869419--2869494	32	2.4	32	88	4	109	71	17	3	7	1.26
2869480--2869558	21	4.0	20	82	12	76	68	18	6	6	1.33
2869438--2869558	61	2.0	63	81	6	149	68	18	5	7	1.34
2870929--2870977	18	2.8	17	81	6	62	16	40	2	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2871272--2871301	12	2.5	12	94	0	51	23	10	33	33	1.88
2872797--2872832	17	2.2	17	90	5	56	69	0	0	30	0.89
2876200--2876263	6	10.7	6	98	0	101	0	56	15	28	1.40
2878775--2878816	18	2.3	19	84	12	52	54	0	2	42	1.13
2878864--2878889	12	2.2	12	100	0	52	76	0	0	23	0.78
2888492--2888578	39	2.2	41	87	8	126	55	4	2	37	1.33
2888678--2888706	6	4.8	6	100	0	58	65	0	0	34	0.93
2888952--2888993	6	6.7	6	86	10	57	33	4	0	61	1.17
2896692--2896722	14	2.2	14	100	0	62	0	12	0	87	0.55
2904127--2904503	141	2.7	141	83	4	474	34	19	9	36	1.84
2904993--2905054	33	2.0	32	84	9	83	40	12	3	43	1.59
2907082--2907131	22	2.3	22	96	0	91	44	8	18	30	1.78
2912190--2912341	76	2.0	76	87	2	216	37	9	10	42	1.71
2917427--2917743	158	2.0	158	86	0	445	23	24	23	28	1.99
2920842--2920893	26	2.1	26	82	7	63	53	3	0	42	1.19
2922669--2922731	31	2.0	31	90	6	101	34	6	7	50	1.57
2922675--2922743	31	2.2	31	87	5	95	34	5	10	49	1.61
2923749--2923791	18	2.4	18	80	7	52	46	0	2	51	1.13
2936857--2936958	49	2.1	49	83	8	129	31	3	1	62	1.24
2942866--2942931	29	2.4	27	84	5	78	62	3	1	33	1.20
2942912--2942995	31	2.7	31	74	7	91	57	4	3	34	1.37
2943420--2943444	10	2.5	10	100	0	50	24	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2945182--2945221	9	4.7	9	87	6	57	65	0	0	35	0.93
2945696--2945733	15	2.6	15	87	4	51	36	2	2	57	1.26
2945890--2945929	16	2.5	15	88	12	53	37	0	7	55	1.29
2946722--2946793	25	2.9	25	76	12	76	33	1	1	63	1.11
2947326--2947360	5	7.0	5	100	0	70	20	0	0	80	0.72
2947357--2947414	30	2.0	30	86	3	82	36	0	6	56	1.26
2958827--2958874	15	3.3	14	77	8	51	27	6	0	66	1.15
2961065--2961089	12	2.1	12	100	0	50	40	0	0	60	0.97
2962105--2962149	20	2.2	21	88	4	65	62	13	0	24	1.31
2962827--2962866	21	2.0	21	85	5	55	65	2	2	30	1.19
2968219--2968257	9	4.3	9	90	0	60	46	5	10	38	1.60
2968219--2968257	18	2.2	18	100	0	78	46	5	10	38	1.60
2968343--2968378	18	2.0	19	89	10	58	52	5	0	41	1.24
2968341--2968383	17	2.5	17	85	10	61	53	4	0	41	1.21
2972040--2972083	16	2.8	17	80	13	58	68	2	2	27	1.14
2974449--2974489	15	2.9	15	78	10	50	53	4	0	41	1.22
2975997--2976038	20	2.2	19	86	4	57	35	2	4	57	1.33
2976043--2976110	29	2.3	29	87	0	91	35	20	2	41	1.68
2976358--2976422	30	2.2	30	91	5	105	46	1	0	52	1.10
2978187--2978256	36	1.9	36	91	0	113	32	17	24	25	1.96
2989876--2989970	49	1.9	50	82	6	122	36	1	3	58	1.21
2990251--2990275	11	2.3	11	100	0	50	72	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2990702--2990744	18	2.4	19	76	11	54	69	0	4	25	1.07
3000457--3000497	16	2.5	17	84	7	50	60	9	12	17	1.57
3007133--3007316	89	2.1	88	86	10	250	37	17	11	33	1.86
3007571--3007763	89	2.2	87	81	6	192	32	8	15	43	1.77
3007962--3008006	23	2.0	23	95	0	81	26	31	8	33	1.87
3009934--3009960	13	2.1	13	100	0	54	37	40	0	22	1.54
3010334--3010362	3	9.7	3	100	0	58	65	0	0	34	0.93
3012726--3012775	20	2.5	21	81	15	61	68	4	6	22	1.29
3015204--3015590	200	1.9	202	85	7	538	28	10	20	41	1.85
3015812--3015836	5	5.0	5	100	0	50	0	60	0	40	0.97
3030290--3030334	20	2.2	21	80	8	56	64	4	2	28	1.25
3030299--3030359	20	3.2	20	79	6	63	55	11	1	31	1.45
3030320--3030369	18	2.8	18	81	6	57	50	12	0	38	1.40
3030606--3030644	15	2.6	15	100	0	78	20	33	12	33	1.91
3044195--3044567	201	1.9	195	85	6	522	26	26	19	27	1.99
3050289--3050380	40	2.3	39	83	7	114	41	0	6	52	1.27
3054967--3055002	2	18.5	2	94	5	65	47	0	0	52	1.00
3057738--3057871	67	2.0	67	97	0	250	31	4	16	47	1.66
3057742--3057849	33	3.2	33	69	21	107	30	5	17	46	1.71
3058633--3058687	28	2.0	28	88	0	83	34	18	25	21	1.96
3059353--3059399	23	2.0	23	100	0	94	48	0	25	25	1.51
3065767--3065815	3	16.3	3	91	0	80	32	4	0	63	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3074078--3074115	19	2.0	19	94	0	67	31	18	10	39	1.85
3080357--3080394	20	1.9	20	94	0	67	26	31	10	31	1.90
3080600--3080637	20	1.9	20	94	0	67	34	26	7	31	1.85
3081710--3081753	22	2.0	22	86	0	61	31	2	2	63	1.19
3081723--3081786	6	11.3	6	74	11	55	35	1	1	60	1.15
3081721--3081789	5	12.6	5	74	17	57	39	1	1	57	1.16
3081734--3081804	11	6.4	11	76	12	56	42	1	1	54	1.17
3081710--3081780	17	4.2	17	80	5	72	33	2	2	60	1.26
3081720--3081788	11	6.2	11	75	11	61	40	1	1	56	1.17
3081826--3081895	37	1.9	37	88	8	108	40	31	14	14	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120