genome.fa.s5.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  22  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5849775--5849799	7	3.6	7	100	0	50	48	28	0	24	1.52
5853921--5853974	28	1.9	28	88	0	81	24	29	12	33	1.92
5856471--5856500	14	2.1	15	93	6	53	23	23	6	46	1.75
5857728--5857766	20	2.0	19	90	5	60	23	30	2	43	1.67
5860633--5860699	34	2.0	34	85	5	91	47	13	19	19	1.82
5872674--5872719	22	2.0	23	87	4	67	6	21	4	67	1.32
5879670--5879722	26	2.0	26	100	0	106	26	3	11	58	1.49
5879673--5879730	26	2.3	26	90	3	91	24	5	10	60	1.49
5883333--5883636	145	2.1	145	85	4	409	38	7	23	30	1.83
5883339--5883716	145	2.6	144	79	6	406	37	7	24	31	1.82
5883651--5883891	30	8.1	31	79	7	225	34	3	25	36	1.74
5883651--5883914	59	4.5	59	78	6	241	33	4	25	36	1.75
5883647--5883891	89	2.8	89	83	0	285	33	3	26	35	1.74
5883688--5883914	30	7.7	29	79	8	136	33	4	25	37	1.76
5885711--5886030	30	10.8	30	80	9	248	33	5	25	35	1.78
5885759--5886030	30	9.2	30	82	6	268	34	4	25	36	1.77
5885759--5886000	59	4.1	60	80	5	269	34	3	25	36	1.74
5885762--5886001	89	2.7	90	85	3	317	34	4	25	36	1.75
5885770--5886030	59	4.4	59	78	5	267	35	4	24	35	1.77
5887065--5887107	22	1.9	23	90	4	70	39	0	4	55	1.20
5887120--5887175	19	2.8	20	86	8	78	41	7	0	51	1.29
5887857--5887910	18	3.1	18	76	13	58	46	3	1	48	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5896728--5896794	33	2.0	34	85	5	91	40	2	4	52	1.37
5899268--5899318	24	2.1	24	88	0	75	27	25	23	23	2.00
5900029--5900080	21	2.5	21	75	12	52	25	11	28	34	1.91
5905346--5905373	12	2.3	12	100	0	56	32	25	7	35	1.83
5906398--5906429	5	6.4	5	92	0	55	21	21	34	21	1.97
5909663--5909703	20	2.0	22	85	9	59	58	2	2	36	1.24
5909649--5909703	22	2.5	22	77	14	60	58	3	1	36	1.26
5909867--5909928	20	3.1	19	79	11	61	37	0	1	61	1.06
5909882--5909940	23	2.8	21	84	7	66	33	0	0	66	0.92
5913254--5913291	5	7.6	5	82	11	51	76	0	0	23	0.79
5915086--5915218	70	2.0	66	82	5	158	33	10	12	44	1.76
5918261--5918320	20	3.1	20	85	9	79	45	0	5	50	1.23
5920158--5920261	53	2.0	52	83	9	131	37	4	25	32	1.77
5920153--5920454	58	5.3	56	76	14	255	36	3	27	32	1.73
5920209--5920359	29	5.2	29	71	19	109	34	3	29	32	1.74
5920423--5920631	59	3.6	59	88	2	280	37	3	20	39	1.69
5920429--5920631	88	2.3	89	79	5	200	37	3	20	38	1.69
5920423--5920631	29	7.2	30	76	7	198	37	3	20	39	1.69
5921846--5921889	16	3.0	15	78	18	56	45	2	2	50	1.27
5922518--5922607	6	15.3	6	70	13	62	55	0	2	42	1.12
5922518--5922599	17	4.6	18	82	10	105	54	0	2	42	1.13
5922518--5922599	37	2.3	35	89	4	119	54	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5922875--5923557	92	7.4	92	93	2	1120	35	17	13	33	1.89
5923202--5923554	52	7.5	50	67	25	184	35	17	13	33	1.89
5923555--5924022	101	4.6	101	90	3	715	12	25	21	40	1.88
5923558--5924022	205	2.3	202	90	2	734	11	26	21	40	1.87
5925302--5925347	16	2.7	17	83	12	51	4	10	6	78	1.08
5931530--5931811	58	4.8	57	80	10	295	39	3	26	31	1.72
5931569--5931779	29	7.2	29	68	20	129	38	2	26	32	1.71
5931705--5931796	29	3.2	29	68	17	82	39	2	26	32	1.68
5931525--5931806	116	2.4	116	81	5	327	38	3	26	31	1.72
5931736--5931967	30	7.9	29	75	12	147	37	1	23	37	1.65
5931802--5931923	59	2.1	58	89	1	181	38	1	18	40	1.61
5932547--5932576	8	3.8	8	100	0	60	0	36	0	63	0.95
5933177--5933220	16	3.0	15	78	18	56	45	0	2	52	1.13
5933850--5933939	6	15.3	6	67	13	53	55	1	2	41	1.19
5933850--5933931	17	4.6	17	80	10	92	54	1	2	41	1.21
5933850--5933901	20	2.8	19	88	8	72	59	1	1	36	1.19
5933850--5933931	37	2.3	35	87	4	110	54	1	2	41	1.21
5935132--5935231	30	3.3	30	75	8	105	21	21	17	41	1.91
5935091--5935321	30	7.8	27	70	13	79	22	21	16	40	1.91
5935128--5935321	60	3.2	63	74	15	144	23	20	16	40	1.91
5935875--5936423	62	9.2	62	78	12	519	27	22	17	33	1.96
5936141--5936362	111	2.0	111	91	2	365	27	22	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5937316--5937407	30	3.1	30	82	3	96	60	4	7	27	1.43
5939613--5939659	20	2.3	20	88	0	76	34	25	29	10	1.90
5939835--5940527	83	8.3	83	93	1	1097	52	4	5	37	1.44
5939958--5940179	45	5.2	43	61	24	96	53	5	5	36	1.47
5940658--5940715	28	2.1	29	83	6	75	43	10	0	46	1.38
5943397--5943453	19	2.9	19	84	5	69	38	0	8	52	1.33
5943382--5943459	20	3.8	20	76	13	70	38	1	7	52	1.38
5943404--5943467	19	3.3	20	80	8	53	35	1	7	54	1.39
5944176--5944206	9	3.4	9	95	0	53	61	3	0	35	1.12
5947817--5947875	29	2.1	28	84	9	75	47	0	0	52	1.00
5952173--5952496	29	11.1	28	67	22	136	33	2	32	32	1.70
5952133--5952509	58	6.4	57	85	7	472	32	2	32	32	1.72
5952133--5952509	117	3.2	114	85	7	499	32	2	32	32	1.72
5952133--5952509	175	2.1	176	89	4	593	32	2	32	32	1.72
5954453--5954519	35	1.9	35	87	6	100	52	2	1	43	1.25
5954453--5954540	6	15.0	6	71	13	67	50	2	2	45	1.27
5954471--5954554	41	2.0	42	86	2	116	52	3	3	40	1.36
5959378--5959405	10	2.8	10	100	0	56	28	21	32	17	1.96
5962030--5962072	21	2.0	22	86	8	63	37	4	0	58	1.19
5963000--5963121	59	2.1	59	100	0	244	26	24	24	24	2.00
5963915--5963973	26	2.3	26	82	5	75	28	1	5	64	1.24
5967633--5967662	14	2.1	14	93	0	51	20	6	3	70	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5976343--5976438	3	30.7	3	83	10	88	26	1	3	69	1.09
5976327--5976432	9	12.9	8	70	21	69	23	2	2	70	1.14
5976319--5976433	12	10.2	11	74	16	85	25	2	2	69	1.14
5978033--5978063	10	3.1	10	100	0	62	9	9	9	70	1.33
5980003--5980048	25	1.9	23	86	8	65	34	4	4	56	1.39
5989295--5989372	27	2.9	27	77	11	79	20	16	21	41	1.91
5989283--5989339	14	4.2	13	73	8	51	22	17	22	36	1.94
5989283--5989365	20	4.1	20	76	13	80	20	16	22	39	1.92
5989336--5989374	20	2.0	20	89	0	60	17	17	20	43	1.88
5992116--5992163	12	4.1	12	81	13	55	25	4	0	70	1.04
5992116--5992158	22	2.0	22	90	0	68	23	4	0	72	1.04
5993707--5993744	14	2.7	14	88	8	51	23	2	7	65	1.32
6002013--6002095	18	4.5	17	75	15	60	39	36	6	18	1.75
6002092--6002125	17	2.0	17	94	0	59	38	47	2	11	1.55
6002293--6002330	2	20.0	2	89	10	62	50	0	0	50	1.00
6002855--6002956	46	2.1	49	82	10	122	32	6	3	56	1.44
6003795--6003840	24	2.0	24	83	8	60	19	13	4	63	1.46
6008263--6008309	3	16.7	3	87	12	73	72	0	27	0	0.85
6008266--6008314	6	9.2	5	93	6	55	73	0	26	0	0.83
6008349--6008391	5	8.8	5	82	12	54	76	0	20	2	0.89
6008261--6008434	90	1.9	91	86	11	248	60	8	24	6	1.49
6008354--6008406	15	3.6	14	78	14	54	75	0	22	1	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6009265--6009310	23	2.0	23	87	8	67	76	0	23	0	0.79
6010289--6010339	25	2.0	25	85	7	68	58	1	3	35	1.28
6014103--6014136	18	1.9	18	88	5	52	29	0	5	64	1.17
6014665--6014690	4	6.5	4	100	0	52	23	0	0	76	0.78
6015017--6015049	13	2.5	13	95	5	57	60	0	0	39	0.97
6015016--6015050	14	2.5	15	86	13	56	62	0	0	37	0.95
6020846--6020876	7	4.4	7	100	0	62	61	12	12	12	1.58
6021003--6021340	30	11.4	29	83	4	372	38	1	23	36	1.66
6021016--6021340	59	5.5	59	80	5	343	37	1	24	36	1.66
6021018--6021338	89	3.6	89	83	2	385	38	1	23	36	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120