genome.fa.s5.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  111  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32892741--32892796	28	2.0	28	82	6	69	39	1	3	55	1.28
32894701--32894725	4	6.2	4	100	0	50	24	0	24	52	1.48
32900719--32900813	31	3.2	28	76	13	84	38	12	10	37	1.78
32909791--32909838	24	1.9	26	84	16	66	18	10	6	64	1.45
32914066--32914137	37	1.9	38	82	2	92	52	1	1	44	1.18
32922119--32922158	21	1.9	21	84	0	53	45	27	2	25	1.66
32940775--32940860	43	2.0	42	84	4	111	51	19	0	29	1.48
32941081--32941118	18	2.0	20	85	10	53	7	0	15	76	1.01
32946489--32946546	29	2.0	29	86	0	80	34	15	10	39	1.81
32957874--32957941	31	2.2	32	81	5	84	29	13	16	41	1.86
32961820--32961863	14	2.8	16	80	16	56	52	0	0	47	1.00
32963233--32963300	31	2.2	32	89	2	102	32	1	4	61	1.24
32963737--32963783	22	2.2	22	85	11	62	31	0	0	68	0.90
32963799--32963858	23	2.5	23	82	17	70	35	0	1	63	1.05
32963799--32963848	21	2.2	23	86	10	68	36	0	2	62	1.07
32968337--32968393	16	3.6	16	73	20	57	71	3	1	22	1.10
32968721--32968757	17	2.2	17	90	4	58	59	8	0	32	1.27
32971667--32971746	30	2.7	30	86	3	108	21	12	23	42	1.87
32971956--32972036	30	2.7	30	82	3	101	22	13	22	41	1.88
32971494--32972074	289	2.0	289	94	0	1027	29	15	22	32	1.95
32972025--32972141	29	4.0	29	80	4	128	22	15	24	37	1.93
32972073--32972155	29	2.8	29	87	7	96	21	15	27	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32981469--32981518	22	2.4	22	83	6	59	42	0	4	54	1.19
32988109--32988168	29	2.0	29	81	9	68	33	11	8	46	1.70
32989327--32989442	17	6.8	17	86	5	155	39	1	3	55	1.27
32989338--32989428	11	8.0	11	72	17	62	40	1	3	54	1.24
32989329--32989428	23	4.4	23	73	14	75	40	2	3	55	1.27
32989328--32989428	6	17.7	6	71	19	74	39	1	2	55	1.26
32991450--32991703	30	8.6	30	73	7	130	39	25	1	33	1.67
32991528--32991703	30	6.0	29	77	7	142	38	26	2	32	1.69
32991521--32991698	59	3.0	58	81	9	184	39	24	2	33	1.68
32991479--32991698	59	3.7	61	77	9	181	40	24	2	32	1.68
32991799--32991861	28	2.2	28	86	10	85	33	30	9	26	1.88
32991947--32992008	28	2.2	28	88	5	90	33	32	9	24	1.88
32991723--32992114	147	2.7	142	77	9	396	29	25	8	37	1.85
32991975--32992243	117	2.3	118	90	1	425	32	27	6	33	1.83
32991977--32992172	58	3.3	59	74	10	202	31	28	6	34	1.82
32992035--32992229	58	3.3	58	78	7	241	33	25	4	36	1.77
32996727--32996761	8	4.4	8	96	0	61	40	0	0	60	0.97
32997636--32997691	18	3.1	19	72	12	64	44	0	1	53	1.11
33010336--33010403	3	22.7	3	87	0	100	32	0	33	33	1.58
33010758--33010802	15	2.7	17	83	10	58	62	4	26	6	1.39
33020634--33020665	13	2.4	14	90	10	50	53	3	0	43	1.16
33022987--33023013	4	6.8	4	100	0	54	25	0	25	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33024191--33024249	31	2.0	30	86	6	84	44	16	8	30	1.78
33027881--33028027	78	1.9	79	84	8	201	46	2	6	44	1.42
33031774--33031820	23	2.0	23	83	0	58	40	0	8	51	1.33
33032108--33032143	18	1.9	19	94	5	65	41	0	0	58	0.98
33032150--33032214	19	3.4	18	79	14	60	36	3	6	53	1.41
33032156--33032212	20	2.9	19	80	17	64	36	3	3	56	1.34
33032388--33032426	14	2.6	15	84	12	53	43	17	7	30	1.77
33039418--33039457	19	2.1	19	86	9	55	20	17	17	45	1.86
33062312--33062356	3	15.0	3	90	0	72	62	0	37	0	0.96
33062299--33062391	6	16.0	6	82	6	66	54	0	44	1	1.07
33066902--33066940	18	2.2	18	90	0	60	28	7	35	28	1.85
33076595--33076626	2	16.0	2	100	0	64	50	0	0	50	1.00
33077638--33077673	12	2.8	13	91	8	56	61	0	2	36	1.11
33084165--33084464	53	5.6	53	84	0	393	37	19	14	28	1.92
33089900--33089932	15	2.2	16	89	10	52	51	0	0	48	1.00
33091806--33091833	4	7.0	4	100	0	56	25	0	25	50	1.50
33099122--33099146	13	1.9	13	100	0	50	48	0	0	52	1.00
33108355--33108401	19	2.4	19	80	16	51	68	6	0	25	1.13
33108489--33108554	25	2.6	25	75	2	69	62	9	6	22	1.47
33108964--33109840	79	11.4	79	71	11	529	30	27	9	32	1.87
33109041--33109469	151	2.9	148	79	4	468	30	28	9	31	1.88
33109340--33109840	80	6.4	79	72	9	368	30	26	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33108964--33109840	378	2.3	378	81	7	993	30	27	9	32	1.87
33110403--33110568	79	2.1	77	80	6	181	31	25	11	31	1.91
33111732--33111772	20	2.2	20	86	8	59	46	4	4	43	1.46
33116616--33116707	2	46.5	2	95	2	168	48	0	1	50	1.08
33119839--33119878	20	2.0	20	85	0	53	27	35	0	37	1.57
33120048--33120302	124	2.0	125	96	0	476	25	30	0	43	1.58
33120689--33120726	19	2.0	19	89	0	58	36	10	21	31	1.87
33124664--33124698	2	17.5	2	100	0	70	48	0	0	51	1.00
33125929--33125975	18	2.8	16	76	17	51	29	0	0	70	0.88
33125938--33125998	29	2.1	29	100	0	122	32	0	0	67	0.91
33125940--33125996	18	3.6	18	67	30	56	35	0	0	64	0.93
33137232--33137274	18	2.3	18	92	4	68	48	13	2	34	1.56
33137664--33137690	8	3.4	8	100	0	54	11	0	0	88	0.50
33138296--33138358	29	2.1	32	85	8	87	46	6	1	46	1.38
33143728--33143789	28	2.2	28	85	2	81	33	4	4	56	1.42
33143736--33143813	28	2.8	28	78	9	79	35	2	5	56	1.35
33143936--33143970	18	1.9	18	94	0	61	34	11	8	45	1.71
33154176--33154267	31	3.0	31	85	0	121	43	9	8	38	1.69
33164582--33164680	9	10.2	9	70	25	53	51	0	2	46	1.12
33164574--33164684	11	10.1	11	71	24	67	51	0	2	45	1.15
33164574--33164692	51	2.4	48	86	8	168	50	0	2	47	1.14
33165995--33166049	26	2.1	26	83	10	67	45	0	52	1	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33166082--33166160	11	7.4	11	75	15	60	48	2	0	49	1.14
33166827--33166935	6	18.0	6	74	16	82	49	0	1	48	1.11
33166831--33166895	17	4.1	15	81	15	78	43	0	3	53	1.16
33166835--33166898	31	2.1	31	91	5	103	43	0	3	53	1.16
33166842--33166891	25	2.0	25	88	0	73	42	0	4	54	1.19
33166827--33166897	11	6.6	11	73	20	62	42	0	2	54	1.14
33166827--33166927	42	2.4	41	81	6	114	48	0	1	49	1.12
33167107--33167137	15	2.1	15	100	0	62	19	54	12	12	1.70
33167557--33167695	30	4.6	30	93	0	233	36	23	3	35	1.73
33167677--33167871	59	3.3	59	83	4	209	31	26	6	35	1.82
33179746--33180517	68	11.3	68	96	0	1357	33	18	20	27	1.96
33179746--33180517	341	2.3	341	97	0	1465	33	18	20	27	1.96
33180807--33180915	6	18.0	6	74	16	82	49	0	1	48	1.11
33180811--33180875	17	4.1	15	81	15	78	43	0	3	53	1.16
33180815--33180878	31	2.1	31	91	5	103	43	0	3	53	1.16
33180822--33180871	25	2.0	25	88	0	73	42	0	4	54	1.19
33180807--33180877	11	6.6	11	73	20	62	42	0	2	54	1.14
33180807--33180907	42	2.4	41	81	6	114	48	0	1	49	1.12
33181522--33181690	30	5.6	30	92	0	248	39	24	1	34	1.66
33181522--33181689	90	1.9	90	91	0	273	39	24	1	34	1.66
33181672--33181866	59	3.3	58	82	5	225	31	27	6	34	1.83
33191082--33191115	16	2.1	17	88	5	52	47	23	2	26	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33194837--33194913	23	3.3	23	81	5	84	36	10	12	40	1.78
33194833--33194900	23	2.9	23	84	2	91	32	11	13	42	1.80
33196404--33196608	90	2.3	90	94	0	356	36	25	8	30	1.85
33200030--33200096	29	2.2	30	84	5	82	31	0	4	64	1.14
33202259--33202319	6	10.2	6	100	0	122	32	0	50	16	1.45
33207085--33207136	25	2.0	26	85	3	70	48	13	15	23	1.80
33213421--33213450	2	15.0	2	100	0	60	0	50	0	50	1.00
33228375--33228416	21	2.0	21	81	9	50	52	7	2	38	1.42
33233476--33233505	16	1.9	15	93	6	51	50	6	0	43	1.28
33239220--33239253	17	1.9	17	94	5	59	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120