genome.fa.s5.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  102  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29491328--29491390	27	2.3	27	97	0	117	14	31	34	19	1.91
29491328--29491408	27	3.0	27	87	3	110	16	30	32	20	1.95
29491561--29491691	57	2.4	55	78	10	142	56	5	2	35	1.35
29491755--29491815	27	2.3	27	94	0	104	14	24	39	21	1.91
29491850--29491899	25	2.0	25	96	0	91	48	6	20	26	1.72
29491890--29491947	26	2.2	26	84	0	71	55	5	29	10	1.55
29494694--29494751	28	2.1	28	83	6	73	36	1	12	50	1.50
29494737--29494792	26	2.2	26	83	6	69	33	0	8	57	1.30
29494858--29494915	6	9.8	6	96	3	109	65	17	0	17	1.27
29497254--29497298	13	3.7	12	83	13	56	17	2	2	77	0.97
29497296--29497328	16	2.1	16	94	5	59	57	0	0	42	0.98
29498294--29498355	27	2.3	27	100	0	124	22	41	25	9	1.84
29509337--29509364	2	14.0	2	100	0	56	50	0	0	50	1.00
29515650--29515687	16	2.4	16	90	0	58	13	21	26	39	1.89
29518935--29518969	17	2.0	18	88	5	54	62	0	0	37	0.95
29527952--29527986	7	5.0	7	100	0	70	14	0	28	57	1.38
29529706--29529740	16	2.3	15	90	5	52	2	14	0	82	0.77
29529713--29529768	17	3.2	17	83	11	69	7	16	1	75	1.11
29529706--29529751	18	2.7	18	87	12	62	6	15	0	78	0.95
29530797--29530833	18	2.1	19	90	10	60	78	0	10	10	0.97
29531096--29531132	15	2.2	18	86	13	53	32	2	5	59	1.34
29533824--29533849	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29541434--29541528	29	3.3	29	96	0	172	40	31	10	17	1.84
29541434--29541573	58	2.5	57	81	7	146	40	28	11	19	1.86
29543023--29543345	59	5.5	58	86	5	364	34	26	3	35	1.74
29543169--29543264	30	3.2	29	68	19	81	35	26	4	34	1.76
29543181--29543334	30	5.2	29	68	18	86	31	25	5	36	1.80
29543348--29543408	27	2.2	28	80	16	74	32	29	9	27	1.89
29544927--29544973	20	2.3	20	85	10	60	38	0	10	51	1.37
29551605--29551724	58	2.1	58	88	0	177	33	0	16	50	1.46
29551630--29551739	58	1.9	58	86	3	159	30	0	18	50	1.47
29555555--29555682	64	2.0	64	95	0	229	31	22	14	32	1.93
29556163--29556245	3	27.3	3	97	2	157	66	0	32	1	1.00
29558478--29558510	16	2.1	16	94	0	57	24	18	15	42	1.88
29558851--29558983	70	1.9	67	87	4	194	33	12	11	42	1.78
29559068--29559098	9	3.4	9	90	0	53	54	22	0	22	1.44
29589070--29589124	26	2.1	27	89	3	85	36	0	3	60	1.15
29589999--29590045	24	1.9	25	83	12	62	8	0	34	57	1.29
29591070--29591144	11	6.5	11	75	11	62	5	25	0	69	1.09
29591077--29591141	23	2.8	22	79	11	58	6	24	0	69	1.11
29591515--29591579	21	3.0	20	76	10	51	46	26	0	27	1.53
29591524--29591579	21	2.7	20	80	5	58	48	21	0	30	1.51
29591559--29591594	15	2.4	15	90	0	54	44	27	2	25	1.68
29591632--29591690	10	5.7	10	74	6	55	16	25	30	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29591632--29591690	21	2.9	21	84	2	66	16	25	30	27	1.97
29591677--29591735	7	8.7	7	79	7	68	16	23	23	35	1.95
29591684--29591735	20	2.6	20	90	0	86	17	23	23	36	1.95
29591677--29591735	27	2.2	27	81	6	66	16	23	23	35	1.95
29592787--29592836	3	16.7	3	100	0	100	32	0	0	68	0.90
29598849--29598885	17	2.1	19	85	10	51	51	0	2	45	1.15
29608733--29608807	36	2.0	39	87	7	111	46	0	2	50	1.15
29609881--29609958	36	2.1	39	90	7	126	51	2	0	46	1.14
29610289--29610328	20	2.0	21	90	5	64	55	2	0	42	1.13
29611909--29611949	16	2.6	16	78	21	50	34	2	0	63	1.08
29611933--29612011	29	2.7	30	80	2	88	43	2	2	51	1.28
29622070--29622153	12	7.1	12	70	17	59	33	13	15	38	1.86
29622081--29622146	24	2.8	23	81	6	80	34	12	13	39	1.82
29627539--29628176	319	2.0	318	99	0	1267	27	18	11	43	1.83
29631443--29631514	15	4.7	15	75	14	58	36	0	0	63	0.94
29631626--29631664	19	2.1	19	85	0	51	33	0	2	64	1.08
29634070--29634102	17	1.9	17	88	11	50	45	18	12	24	1.83
29646757--29646801	15	3.0	15	83	0	63	4	8	62	24	1.43
29647747--29647804	30	2.0	29	89	3	89	13	8	3	74	1.19
29648138--29648188	11	4.4	11	75	22	50	31	1	1	64	1.15
29648138--29648189	12	4.3	12	79	15	54	30	1	1	65	1.14
29652065--29652101	14	2.6	15	87	8	51	37	21	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29654988--29655027	14	2.9	14	88	0	53	5	40	5	50	1.46
29657985--29658024	17	2.4	16	80	8	53	42	12	7	37	1.71
29658210--29658247	15	2.5	15	83	16	51	34	0	7	57	1.28
29661589--29661629	19	2.2	19	100	0	82	24	9	12	53	1.68
29664689--29664829	72	2.0	72	82	2	176	27	24	14	34	1.94
29668026--29668058	13	2.5	13	86	13	50	57	3	0	39	1.14
29678132--29678169	17	2.2	17	86	9	51	73	2	0	23	0.95
29683414--29683490	24	3.2	24	83	0	91	51	11	7	28	1.66
29684136--29684193	15	3.6	15	72	17	53	48	1	1	48	1.22
29686818--29686934	29	4.0	29	83	7	130	31	2	26	39	1.70
29688776--29688851	17	4.5	17	73	5	73	51	5	1	42	1.33
29688776--29688851	34	2.2	35	79	6	84	51	5	1	42	1.33
29691894--29691925	2	16.0	2	100	0	64	50	0	0	50	1.00
29692427--29692464	20	2.0	20	89	5	60	39	15	13	31	1.86
29692971--29693010	18	2.2	18	86	8	55	55	0	0	45	0.99
29695648--29695731	31	2.7	32	80	8	95	34	4	14	46	1.65
29695950--29696014	29	2.2	29	86	5	85	53	7	3	35	1.45
29695959--29696025	30	2.1	32	84	13	86	53	7	2	35	1.44
29696763--29696986	120	1.9	121	84	5	303	35	6	5	52	1.51
29698980--29699033	28	1.9	28	84	0	72	37	1	5	55	1.34
29699008--29699075	6	11.3	6	80	12	77	42	1	1	54	1.18
29699002--29699072	17	4.4	16	82	13	83	40	2	1	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29699014--29699073	31	1.9	31	93	0	102	41	1	1	55	1.20
29699075--29699114	14	2.8	15	77	14	57	65	5	0	30	1.14
29699066--29699112	13	3.6	13	80	8	51	63	4	0	31	1.13
29699080--29699120	21	2.0	21	90	9	66	58	4	2	34	1.32
29700380--29700415	16	2.1	18	90	10	58	8	22	44	25	1.80
29700689--29701005	161	2.0	158	85	7	428	27	17	13	41	1.87
29701139--29701407	29	9.2	29	71	11	165	33	30	3	33	1.75
29701138--29701407	59	4.6	57	73	14	178	33	30	3	32	1.75
29701144--29701399	88	2.9	88	92	2	419	34	28	2	34	1.72
29701326--29701439	58	2.0	58	82	3	140	28	31	5	34	1.80
29703072--29703123	23	2.2	25	86	6	72	48	3	0	48	1.20
29704754--29704817	23	2.8	23	100	0	128	42	12	0	45	1.42
29704758--29704829	12	6.2	12	68	18	53	41	13	1	43	1.53
29707598--29707729	60	2.2	60	86	2	176	42	13	2	41	1.57
29707769--29707823	18	2.8	19	81	8	58	61	0	5	32	1.19
29716153--29716197	11	4.0	11	82	2	54	24	44	15	15	1.85
29723803--29723861	19	3.2	18	77	17	59	32	1	3	62	1.21
29725043--29725093	23	2.2	24	85	3	68	60	1	0	37	1.08
29725139--29725186	8	6.4	8	77	20	50	68	6	0	25	1.12
29725114--29725178	22	3.0	21	79	18	62	61	3	4	30	1.31
29725143--29725185	15	2.9	15	89	6	52	67	4	0	27	1.10
29725152--29725185	15	2.3	15	95	5	61	67	5	0	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29725139--29725187	23	2.1	23	85	7	64	69	6	0	24	1.11
29725873--29725926	28	1.9	28	81	7	65	18	3	14	62	1.46
29725922--29725972	21	2.4	21	86	0	75	29	5	13	50	1.65
29732714--29732741	3	9.3	3	100	0	56	0	0	67	32	0.91
29732671--29732777	48	2.2	48	91	3	171	13	3	51	31	1.58
29736044--29736082	14	2.8	14	84	0	60	38	0	0	61	0.96
29736785--29736830	19	2.4	19	85	3	56	56	10	6	26	1.58
29746192--29746234	17	2.5	18	85	7	54	44	0	2	53	1.13
29756780--29756821	6	7.2	6	81	5	50	80	2	11	4	0.95
29757678--29757725	25	1.9	25	86	0	69	37	2	14	45	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120