genome.fa.s5.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  49  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14307402--14307448	14	3.5	14	82	5	62	19	10	0	70	1.16
14311340--14311373	3	11.0	3	87	6	50	67	0	29	2	1.05
14311818--14311861	18	2.4	18	88	3	61	18	13	9	59	1.60
14312470--14312494	11	2.3	11	100	0	50	92	0	8	0	0.40
14316785--14316855	24	3.0	23	89	8	106	57	7	8	26	1.54
14324392--14324526	60	2.3	57	78	7	137	30	14	11	44	1.79
14327431--14327538	47	2.3	47	91	0	171	25	17	8	49	1.74
14327766--14327836	36	1.9	37	86	8	101	22	8	2	66	1.32
14333042--14333094	21	2.5	21	84	0	61	39	24	7	28	1.82
14341548--14341600	16	3.3	16	74	10	54	3	18	3	73	1.14
14342136--14342212	17	4.6	17	75	16	63	53	15	15	15	1.74
14342141--14342212	34	2.2	33	82	7	83	54	16	13	15	1.72
14346894--14347207	158	2.0	158	97	0	592	33	21	18	25	1.96
14359296--14359892	48	12.5	48	85	0	685	36	26	13	23	1.92
14367706--14367745	18	2.3	18	86	4	55	25	5	5	65	1.34
14367827--14367900	37	2.0	37	85	12	100	20	8	4	67	1.33
14379686--14379852	85	2.0	85	86	0	235	22	20	17	38	1.93
14379572--14381308	208	8.4	208	85	2	2014	23	21	16	38	1.93
14379894--14380060	85	2.0	85	84	0	217	24	22	16	36	1.94
14379565--14381308	617	2.8	616	83	4	2060	23	20	16	38	1.93
14381314--14381410	45	2.2	45	92	0	158	29	20	20	28	1.98
14381396--14381546	42	3.5	42	83	6	196	24	15	31	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14381396--14381563	42	3.8	45	81	10	188	26	14	31	27	1.95
14381395--14381613	84	2.5	86	80	10	234	25	14	30	29	1.95
14381866--14382091	49	4.6	49	79	7	226	19	34	15	30	1.93
14389169--14389210	21	2.0	20	82	13	50	0	14	16	69	1.20
14389489--14389868	138	2.8	137	87	1	535	46	6	6	40	1.55
14393305--14393375	30	2.3	30	85	2	97	26	7	4	61	1.40
14393479--14393533	23	2.4	23	84	0	74	30	3	14	50	1.60
14404787--14404844	25	2.3	26	82	8	75	51	8	10	29	1.65
14405283--14405444	12	14.1	12	75	8	131	69	19	4	6	1.30
14405325--14405507	33	5.5	33	80	6	145	70	18	5	6	1.27
14405456--14405497	12	3.8	12	78	18	54	64	26	7	2	1.32
14405467--14405506	21	1.9	21	89	0	62	72	20	5	2	1.15
14410525--14410550	3	8.7	3	100	0	52	69	0	0	30	0.89
14413788--14413830	6	7.2	6	89	0	59	51	0	25	23	1.49
14413783--14413830	18	2.7	18	83	0	60	54	0	22	22	1.45
14425239--14425273	15	2.4	15	90	4	54	62	2	0	34	1.10
14426515--14426573	28	2.1	29	87	3	84	35	11	5	47	1.62
14432725--14432755	14	2.2	14	100	0	62	48	19	0	32	1.49
14435501--14435528	14	2.0	14	100	0	56	14	14	0	71	1.15
14435969--14436016	2	24.0	2	91	0	78	45	50	4	0	1.21
14441191--14441232	18	2.4	17	88	11	59	45	0	0	54	0.99
14442998--14443039	18	2.3	18	88	8	59	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14448752--14448804	24	2.1	26	89	6	83	16	5	3	73	1.17
14448745--14448805	24	2.4	25	83	13	79	18	4	4	72	1.21
14448779--14448823	16	2.7	16	86	13	56	15	4	4	75	1.12
14450279--14450317	13	2.9	13	80	3	51	17	5	2	74	1.12
14450273--14450355	33	2.4	32	79	15	78	16	4	3	74	1.13
14450311--14450352	16	2.7	16	82	17	61	16	4	4	73	1.17
14454848--14454886	20	2.0	20	89	0	60	48	2	10	38	1.51
14461671--14461709	20	2.0	20	89	0	60	48	2	10	38	1.51
14462744--14462791	17	2.9	16	75	9	51	16	16	14	52	1.76
14467717--14467829	40	2.8	40	83	0	154	40	21	16	21	1.91
14468810--14468853	17	2.6	17	82	10	63	38	0	4	56	1.20
14468838--14468872	6	6.0	6	86	6	54	45	0	0	54	0.99
14468828--14468872	23	2.0	23	95	0	81	42	0	2	55	1.12
14468810--14468888	40	2.0	40	87	5	115	43	0	2	54	1.14
14468844--14468888	17	2.6	17	92	0	72	46	0	0	53	1.00
14468887--14468921	14	2.6	14	90	4	54	60	17	5	17	1.55
14469585--14469645	15	4.0	15	79	10	70	55	3	3	37	1.32
14470716--14470849	29	4.6	30	78	9	109	32	25	5	36	1.78
14470686--14470849	58	2.8	58	76	9	163	31	24	5	38	1.78
14475165--14475216	22	2.4	22	86	0	68	75	3	21	0	0.97
14476199--14476901	49	14.4	48	69	13	368	37	18	27	16	1.93
14476196--14476812	98	6.3	98	89	1	873	35	19	27	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14476679--14476943	146	1.8	144	82	3	343	39	17	25	16	1.91
14477359--14477414	17	3.3	17	82	7	69	42	1	1	53	1.21
14477413--14477447	14	2.6	14	90	4	54	60	17	5	17	1.55
14479168--14479368	29	6.9	29	75	9	142	32	24	1	40	1.65
14479148--14479368	88	2.5	85	82	8	248	33	24	1	40	1.66
14479322--14479452	59	2.2	59	90	1	210	32	22	5	38	1.77
14479205--14479459	29	8.7	30	73	12	106	32	24	3	39	1.73
14479351--14479485	29	4.7	29	76	11	107	32	25	7	34	1.84
14482443--14482485	19	2.3	19	87	0	59	34	11	11	41	1.78
14490322--14490513	51	3.6	53	87	6	266	36	20	13	29	1.91
14490322--14490513	53	3.6	52	84	7	253	36	20	13	29	1.91
14490322--14490513	104	1.8	106	88	3	298	36	20	13	29	1.91
14493241--14493290	21	2.4	21	93	0	82	28	28	16	28	1.97
14498721--14498759	12	3.2	12	85	7	53	64	0	35	0	0.94
14507146--14507213	29	2.2	29	84	10	82	38	5	19	36	1.76
14507228--14507317	29	3.2	27	79	7	83	28	1	31	38	1.64
14507237--14507447	30	7.1	29	79	7	151	34	2	27	35	1.72
14507265--14507421	60	2.7	57	79	14	167	35	3	28	33	1.73
14507275--14507453	31	6.0	31	77	13	128	37	3	25	33	1.72
14507509--14507604	34	2.9	33	70	16	83	54	4	8	33	1.50
14507467--14507763	161	1.9	161	80	7	363	50	9	15	24	1.74
14509254--14509670	39	10.7	39	75	11	320	24	21	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14509254--14509676	117	3.6	117	78	12	399	24	21	31	22	1.98
14509371--14509676	78	3.9	78	86	4	411	24	21	31	22	1.98
14509371--14509674	156	1.9	156	89	1	466	24	21	31	22	1.98
14509661--14509750	41	2.2	40	84	7	119	34	14	16	34	1.89
14509988--14510575	49	11.9	50	78	4	498	17	30	17	33	1.94
14510016--14510436	146	2.8	146	81	5	434	18	31	15	33	1.93
14509988--14510442	100	4.6	99	77	7	273	18	30	17	33	1.94
14511542--14511621	6	13.3	6	73	19	60	3	15	0	81	0.83
14511542--14511621	13	6.7	12	75	15	60	3	15	0	81	0.83
14511543--14511606	33	1.9	33	84	12	87	1	17	0	81	0.77
14511541--14511621	20	4.1	20	81	10	87	3	14	0	81	0.82
14511541--14511606	14	4.4	15	81	7	64	1	16	0	81	0.76
14512455--14512484	15	2.0	15	93	0	51	0	23	0	76	0.78
14517084--14517302	29	7.5	28	72	13	131	33	3	26	36	1.72
14517074--14517302	30	7.8	29	76	14	157	32	3	26	37	1.74
14519093--14519132	21	1.9	21	84	0	53	30	20	22	27	1.98
14519832--14519890	19	3.2	19	90	2	93	23	25	18	32	1.97
14521517--14521585	31	2.2	31	94	0	120	17	8	33	40	1.80
14527453--14527517	31	2.1	30	83	13	80	49	16	12	21	1.79
14528551--14528601	14	3.6	14	71	10	50	45	3	5	45	1.46
14528551--14528604	28	1.9	28	96	0	99	44	3	7	44	1.49
14528879--14528961	24	3.4	25	76	12	84	13	24	13	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14528942--14529072	40	3.2	41	88	3	203	21	24	6	47	1.75
14529234--14529272	20	2.0	20	84	0	51	46	5	5	43	1.48
14536641--14536691	21	2.4	21	83	0	66	31	23	17	27	1.97
14541661--14541705	21	2.1	21	100	0	90	35	8	22	33	1.85
14552571--14552702	69	1.9	69	92	0	219	34	18	15	31	1.92
14569793--14569831	15	2.6	15	95	0	69	48	20	7	23	1.75
14584075--14584118	23	1.9	23	85	0	61	45	2	9	43	1.48
14584634--14584741	55	2.0	54	85	1	144	16	19	33	30	1.94
14593403--14593501	37	2.7	37	90	0	153	31	34	22	12	1.91
14595033--14595363	90	3.7	88	86	5	402	37	1	25	36	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120