genome.fa.s5.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  55  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16204966--16205013	22	2.2	22	84	0	60	60	2	0	37	1.09
16204982--16205056	22	3.0	23	70	24	62	60	2	1	36	1.20
16204988--16205047	31	1.9	31	83	12	79	61	3	1	33	1.22
16208412--16208509	20	4.9	20	75	12	76	60	0	2	37	1.09
16208474--16208586	18	5.9	18	66	24	54	60	1	6	31	1.32
16208426--16208526	10	10.2	10	70	14	66	59	0	2	37	1.13
16208435--16208575	19	7.1	19	68	15	63	58	1	4	34	1.28
16208756--16208807	10	5.2	10	76	6	52	23	3	1	71	1.13
16222785--16222947	27	6.0	27	71	2	103	28	17	20	33	1.96
16230303--16230329	10	2.7	10	100	0	54	40	0	11	48	1.39
16232107--16232151	23	2.0	23	86	0	63	31	13	20	35	1.91
16232372--16232489	57	2.1	58	91	1	193	49	17	0	33	1.47
16233073--16233121	21	2.3	20	76	10	53	20	10	6	63	1.47
16233079--16233119	21	1.9	21	85	5	55	21	9	2	65	1.34
16238295--16238354	26	2.3	26	91	0	93	51	13	6	28	1.66
16275156--16275187	3	10.7	3	100	0	64	31	0	0	68	0.90
16281702--16281855	71	2.2	71	91	2	247	35	22	19	22	1.96
16283439--16283468	12	2.5	12	94	0	51	43	13	33	10	1.77
16283704--16283763	28	2.1	29	90	3	95	60	8	20	11	1.57
16288119--16288173	28	1.9	27	89	10	83	30	3	3	61	1.30
16288130--16288191	28	2.1	28	85	5	79	32	6	3	58	1.40
16288219--16288253	15	2.3	15	90	0	52	34	5	2	57	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16292158--16292183	11	2.4	11	100	0	52	0	23	7	69	1.14
16305989--16306023	6	5.8	6	93	0	61	14	65	0	20	1.26
16311088--16311116	2	15.0	2	92	7	51	48	0	0	51	1.00
16311216--16311294	39	2.0	39	97	0	149	40	1	11	46	1.48
16311619--16311669	6	8.5	6	100	0	102	66	0	0	33	0.92
16317356--16317382	3	9.0	3	100	0	54	0	33	0	66	0.92
16319001--16319061	19	3.2	19	86	6	70	37	0	6	55	1.26
16320508--16320567	31	1.9	31	86	0	84	33	3	8	55	1.47
16321710--16321809	49	2.0	49	98	0	191	43	9	8	40	1.66
16323955--16323979	5	5.0	5	100	0	50	40	0	40	20	1.52
16333382--16333483	31	3.1	31	79	15	123	39	32	16	11	1.85
16333348--16333483	68	2.0	68	91	2	220	38	31	16	12	1.86
16333302--16333501	37	5.6	37	78	8	189	37	31	17	14	1.89
16333309--16333501	105	1.8	105	82	2	244	37	31	17	13	1.89
16347092--16347133	20	2.2	19	83	12	50	38	16	2	42	1.61
16361012--16361054	21	2.0	21	82	8	52	25	16	20	37	1.93
16361940--16362014	27	2.5	30	81	12	84	22	22	17	37	1.94
16362902--16362961	9	5.8	10	71	21	52	33	3	13	50	1.58
16362898--16363073	37	5.3	34	77	16	133	26	2	14	56	1.53
16362972--16363031	17	3.4	17	68	20	50	20	3	16	60	1.50
16362967--16363073	37	2.9	36	94	4	187	20	2	15	60	1.47
16362888--16363007	56	2.1	56	82	8	154	27	2	15	54	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16362931--16363073	74	1.9	73	83	8	182	25	2	14	57	1.51
16362916--16363073	12	12.8	13	69	22	83	25	3	14	56	1.53
16362970--16363074	25	4.2	25	72	24	71	20	2	17	60	1.49
16363021--16363080	16	3.4	17	68	18	50	23	5	13	58	1.55
16367410--16367658	127	2.0	125	87	1	354	33	20	24	21	1.97
16373138--16373208	24	3.0	24	83	4	90	25	12	7	54	1.62
16374477--16374502	13	2.0	13	100	0	52	38	7	7	46	1.61
16375209--16375268	31	2.0	30	86	3	84	23	18	10	48	1.78
16375211--16375279	31	2.2	31	82	5	77	21	18	13	46	1.83
16375236--16375351	60	1.9	60	82	3	144	19	14	13	51	1.76
16375785--16375871	29	3.0	29	72	21	92	55	10	11	22	1.66
16376326--16376380	27	2.0	27	82	6	67	61	7	0	30	1.23
16377337--16377395	29	2.0	29	96	0	109	37	23	13	25	1.92
16378835--16378876	21	2.0	21	90	9	68	69	11	9	9	1.38
16380824--16380948	30	4.1	30	78	9	137	32	7	23	36	1.82
16381728--16381754	14	1.9	14	100	0	54	25	0	7	66	1.17
16382475--16383040	80	7.1	79	78	8	497	26	18	24	30	1.97
16382510--16383040	42	13.2	42	78	8	500	26	17	25	30	1.97
16382475--16383033	122	4.6	122	78	10	512	26	18	25	30	1.98
16383424--16384080	99	6.6	99	81	1	667	20	29	15	35	1.93
16383424--16384080	198	3.3	197	84	3	822	20	29	15	35	1.93
16383377--16384086	297	2.4	296	82	3	811	20	28	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16384592--16384802	112	1.9	115	87	3	320	38	12	19	29	1.89
16385113--16385165	17	3.1	17	84	10	63	1	20	0	77	0.87
16385128--16385163	19	1.9	18	88	5	54	2	22	0	75	0.94
16386025--16386066	14	3.0	14	80	13	50	2	23	0	73	0.94
16389679--16389977	109	2.8	106	79	5	302	36	18	14	30	1.90
16390204--16390233	15	2.0	15	100	0	60	80	0	6	13	0.91
16390339--16390502	30	5.5	30	82	7	163	35	7	22	33	1.83
16390332--16390502	60	2.8	60	84	4	218	35	8	23	32	1.85
16391277--16391303	14	1.9	14	100	0	54	25	0	7	66	1.17
16392147--16392171	10	2.5	10	100	0	50	68	16	8	8	1.38
16394171--16394210	6	6.7	6	100	0	80	52	32	0	15	1.43
16395676--16395732	30	1.9	29	85	3	78	42	0	7	50	1.29
16396447--16396477	16	2.0	15	93	6	53	22	0	0	77	0.77
16396994--16397053	31	1.9	31	100	0	120	45	20	3	31	1.67
16397423--16397449	11	2.5	11	100	0	54	77	0	0	22	0.76
16397561--16397602	18	2.4	17	81	14	50	57	2	4	35	1.33
16398187--16398238	27	2.0	26	84	3	68	32	3	3	59	1.33
16398910--16398951	22	2.0	22	86	9	61	47	4	0	47	1.23
16399260--16399312	21	2.6	20	82	5	61	20	3	1	73	1.08
16402178--16402226	25	2.0	25	84	15	66	4	20	0	75	0.96
16402802--16402844	17	2.5	17	88	0	59	55	16	11	16	1.68
16407794--16407818	12	2.1	12	100	0	50	8	16	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16409500--16409543	18	2.4	18	80	0	52	18	13	22	45	1.84
16428197--16428244	17	2.8	17	77	0	51	18	16	10	54	1.70
16433582--16433716	28	4.5	31	70	14	97	25	15	11	46	1.80
16433584--16433716	59	2.3	59	83	10	173	25	15	12	46	1.80
16433937--16434074	31	4.8	27	75	15	118	50	8	15	25	1.73
16433936--16434029	28	3.3	28	78	17	104	51	8	17	23	1.72
16433973--16434053	28	3.0	27	83	5	76	51	7	16	24	1.69
16434734--16434784	18	2.8	18	82	11	68	35	1	1	60	1.19
16436448--16436530	31	2.6	31	82	5	94	50	8	6	34	1.57
16449317--16449413	31	3.2	31	76	8	110	27	17	7	47	1.74
16449325--16449416	28	3.3	26	75	19	94	26	17	6	50	1.70
16449307--16449478	59	2.9	59	80	6	177	23	16	10	48	1.77
16449701--16449759	29	2.0	29	86	6	82	45	11	13	28	1.79
16450447--16450498	21	2.6	19	84	9	59	63	0	1	34	1.06
16450518--16450554	18	2.0	20	89	10	60	64	5	0	29	1.15
16450748--16450845	9	10.3	9	71	17	56	26	4	3	66	1.24
16450796--16450848	17	2.9	18	83	13	65	24	0	3	71	1.02
16450787--16450875	19	4.6	19	75	10	74	32	1	3	62	1.19
16454861--16454897	7	5.3	7	100	0	74	27	0	13	59	1.35
16454834--16454897	21	3.1	20	86	8	76	26	3	9	60	1.42
16455877--16455930	24	2.2	24	80	6	65	20	24	5	50	1.69
16458363--16458432	9	7.7	9	75	9	52	28	2	1	67	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16460141--16460262	41	3.0	41	76	9	115	36	20	26	17	1.94
16460233--16460284	24	2.2	24	89	0	77	26	23	34	15	1.94
16460243--16460289	24	2.0	24	100	0	94	25	21	36	17	1.94
16460269--16460630	41	8.9	41	80	3	381	31	22	27	18	1.97
16460264--16460630	123	3.0	122	83	2	448	31	22	28	18	1.97
16465999--16466256	43	6.1	43	85	3	335	24	18	27	29	1.98
16467955--16468004	21	2.4	21	89	0	73	26	16	34	24	1.95
16470135--16470160	5	5.2	5	100	0	52	19	0	42	38	1.51
16470434--16470512	23	3.5	22	85	3	95	37	27	21	12	1.90
16470507--16470554	23	2.1	23	96	0	87	39	22	29	8	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120