genome.fa.s5.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  104  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30078351--30078435	34	2.5	35	83	11	88	57	1	3	37	1.23
30078369--30078437	17	3.9	18	83	14	99	57	1	0	40	1.07
30078845--30079220	39	9.7	39	69	8	178	28	19	27	25	1.98
30078845--30079260	78	5.4	77	83	4	417	28	19	26	24	1.99
30079121--30079259	39	3.6	39	71	16	119	28	22	26	22	1.99
30084566--30084686	23	5.2	23	85	7	163	11	23	22	42	1.86
30084566--30084686	48	2.6	46	84	7	163	11	23	22	42	1.86
30084651--30084725	39	1.9	39	94	0	132	12	21	21	45	1.84
30084690--30084754	23	2.9	23	81	2	78	10	24	18	46	1.81
30093564--30093706	67	2.1	67	93	2	243	61	6	7	24	1.46
30093869--30094113	30	8.3	30	82	9	238	34	2	27	35	1.69
30093869--30094094	59	3.8	58	80	9	235	34	1	26	37	1.67
30093855--30094102	29	8.4	29	82	8	216	34	1	26	37	1.66
30093885--30094134	89	2.8	86	78	10	236	36	2	25	36	1.71
30095864--30095929	17	3.8	17	89	2	105	56	1	0	42	1.08
30095844--30095929	34	2.5	34	88	3	120	55	1	2	40	1.20
30102903--30103014	46	2.5	46	80	10	131	35	19	16	28	1.93
30114690--30114715	6	4.3	6	100	0	52	53	15	15	15	1.73
30118617--30118644	14	2.0	14	100	0	56	35	28	14	21	1.92
30119356--30119643	51	5.6	51	89	1	389	30	22	13	33	1.93
30127353--30127381	2	14.5	2	100	0	58	51	48	0	0	1.00
30146391--30146421	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30149867--30149925	29	2.0	30	86	3	84	32	6	13	47	1.69
30150053--30150137	31	2.7	31	70	12	75	43	12	10	32	1.77
30150117--30150179	31	2.1	30	85	8	83	47	12	4	34	1.63
30153378--30153460	29	2.8	30	75	15	91	59	7	3	30	1.42
30153526--30153560	18	1.9	18	88	0	52	25	0	22	51	1.48
30155936--30156028	31	3.1	31	83	6	111	37	15	11	35	1.84
30176597--30176655	31	1.9	31	92	0	100	40	10	11	37	1.76
30176981--30177040	17	3.5	17	72	20	61	40	1	38	20	1.62
30182379--30182450	35	2.1	34	89	2	108	45	4	33	16	1.67
30182375--30182438	17	3.8	16	75	8	56	45	3	32	18	1.65
30186871--30186918	24	1.9	26	84	16	66	31	22	0	45	1.53
30198263--30198314	27	1.9	27	84	0	68	48	11	25	15	1.78
30218895--30218930	19	1.9	18	88	5	54	16	41	25	16	1.89
30226984--30227034	15	3.5	15	71	15	52	25	7	11	54	1.63
30236315--30236356	6	7.0	6	88	0	66	30	4	16	47	1.67
30236795--30236886	42	2.2	42	84	0	112	27	19	32	20	1.97
30237386--30237430	23	2.0	23	95	0	81	37	6	8	46	1.61
30241202--30241242	20	2.0	21	85	4	57	31	19	17	31	1.95
30245759--30245817	29	2.0	30	90	3	93	33	3	11	50	1.56
30247061--30247099	15	2.6	15	84	11	53	53	7	0	38	1.30
30250097--30250139	21	2.0	21	86	0	59	30	0	2	67	1.03
30250248--30250286	18	2.0	20	85	9	55	64	5	0	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30251300--30251341	17	2.5	17	80	7	50	35	2	0	61	1.09
30252713--30252780	27	2.5	26	79	9	75	11	20	0	67	1.21
30262227--30262251	7	3.6	7	100	0	50	88	0	12	0	0.53
30264063--30264110	19	2.6	19	96	3	89	66	4	16	12	1.39
30270188--30270224	6	6.2	6	100	0	74	16	0	0	83	0.64
30272789--30272820	2	16.0	2	100	0	64	50	0	0	50	1.00
30294258--30294323	32	2.0	32	85	8	89	50	0	1	48	1.10
30301132--30301178	16	2.9	16	72	15	51	68	2	0	29	1.02
30301114--30301205	28	3.2	27	72	23	71	64	2	0	33	1.06
30301132--30301199	32	2.1	32	81	8	75	67	1	0	30	0.99
30301744--30301771	3	9.3	3	100	0	56	67	0	0	32	0.91
30303578--30303686	44	2.5	43	89	2	166	38	9	17	34	1.82
30304066--30304186	63	1.9	63	84	3	163	28	14	5	52	1.64
30308770--30309098	114	2.8	114	84	5	419	44	18	15	22	1.87
30318427--30318469	2	21.5	2	100	0	86	51	0	0	48	1.00
30320317--30320373	29	1.9	30	82	3	71	45	10	3	40	1.56
30323912--30323979	29	2.3	29	87	7	93	55	10	10	23	1.64
30326308--30326426	61	2.0	61	83	9	154	31	5	11	51	1.60
30328791--30328853	30	2.1	31	82	14	78	47	15	14	22	1.81
30329432--30329502	31	2.3	31	83	11	85	21	12	22	43	1.86
30345723--30345752	15	2.0	15	93	0	51	70	0	16	13	1.18
30345903--30345963	25	2.5	24	81	5	70	54	1	1	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30350063--30350112	3	16.7	3	95	0	91	32	2	0	66	1.03
30355070--30355213	48	3.0	48	98	0	279	27	18	14	40	1.89
30365799--30365839	14	2.9	14	80	19	50	36	21	0	41	1.54
30382054--30382090	6	6.2	6	93	0	56	29	0	16	54	1.43
30382617--30382707	42	2.2	42	83	0	119	25	18	34	21	1.96
30383520--30383562	21	2.1	21	86	4	61	20	0	6	72	1.08
30386911--30386969	29	2.0	30	83	9	77	32	8	11	47	1.70
30388889--30388921	16	2.1	16	94	0	57	33	0	0	66	0.92
30389730--30389757	13	2.2	13	100	0	56	64	7	7	21	1.43
30400385--30400426	19	2.3	19	84	12	52	26	2	4	66	1.23
30406032--30406066	15	2.2	15	90	10	52	20	0	5	74	1.02
30406220--30406256	16	2.2	18	85	9	51	51	2	0	45	1.15
30406342--30406429	27	3.3	27	81	12	76	54	3	4	37	1.38
30406388--30406438	25	2.0	26	100	0	88	54	3	3	37	1.37
30408470--30408518	21	2.3	20	82	6	53	38	0	4	57	1.18
30410240--30410278	19	1.9	19	85	10	51	46	7	2	43	1.46
30412394--30412448	23	2.4	25	79	17	73	45	10	3	40	1.57
30412897--30412955	29	2.0	30	86	3	84	37	1	6	54	1.37
30413097--30413185	31	3.0	30	72	16	85	42	13	8	34	1.76
30413622--30413700	30	2.6	30	79	0	104	50	1	6	41	1.36
30418786--30418847	31	2.0	31	87	0	88	33	3	11	51	1.54
30420001--30420100	24	4.2	24	71	5	85	22	12	43	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30420064--30420206	39	3.7	39	96	0	241	23	12	40	23	1.89
30420304--30420431	33	3.8	33	78	6	130	21	14	38	26	1.91
30420451--30420581	42	3.1	42	83	2	174	15	15	41	27	1.87
30420493--30420734	108	2.2	108	96	0	439	14	11	41	32	1.82
30420601--30420689	42	2.1	42	87	0	124	13	14	41	30	1.84
30421406--30421454	15	3.3	15	72	16	57	38	8	0	53	1.31
30426588--30426647	31	1.9	31	83	6	77	43	18	13	25	1.86
30427824--30427869	18	2.6	17	86	10	65	58	0	2	39	1.10
30427836--30427875	18	2.2	18	86	8	55	60	5	2	32	1.32
30438657--30438702	24	1.9	24	95	0	83	50	4	28	17	1.65
30440394--30440478	42	2.0	42	90	0	134	51	15	7	25	1.68
30440821--30440871	23	2.3	22	79	3	57	41	0	1	56	1.10
30448997--30449025	8	3.6	8	100	0	58	48	0	13	37	1.43
30460171--30460234	2	32.0	2	100	0	128	50	0	0	50	1.00
30460391--30460419	5	5.8	5	100	0	58	0	20	0	79	0.74
30460486--30460542	25	2.3	24	85	11	71	28	5	7	59	1.45
30461333--30461417	40	2.1	40	82	0	98	51	7	11	29	1.64
30468614--30468658	22	2.0	22	100	0	90	26	8	26	37	1.86
30469793--30469817	13	1.9	13	100	0	50	40	0	16	44	1.47
30470296--30470335	20	2.0	21	90	5	64	47	5	0	47	1.24
30473340--30473365	2	13.0	2	100	0	52	50	0	0	50	1.00
30491103--30491137	18	1.9	19	88	11	56	48	5	0	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30496738--30496780	21	2.0	22	86	4	61	55	2	2	39	1.25
30509146--30509209	28	2.3	28	75	5	67	23	12	14	50	1.76
30509520--30509574	23	2.4	22	82	14	67	27	1	3	67	1.17
30509893--30509972	29	2.7	29	82	9	90	33	5	12	48	1.63
30510165--30510226	31	2.1	30	87	6	90	48	12	3	35	1.58
30510163--30510229	29	2.3	27	80	14	80	46	11	4	37	1.61
30511875--30511969	46	2.1	46	100	0	190	16	12	2	68	1.30
30511892--30511967	26	3.2	26	62	27	67	18	13	2	65	1.37
30514146--30514170	13	1.9	13	100	0	50	16	0	0	84	0.63
30515506--30515547	6	6.7	6	91	8	66	50	0	30	19	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120