genome.fa.s5.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  82  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23877369--23877483	9	12.3	9	69	10	54	59	4	0	35	1.23
23881252--23881387	73	1.9	72	85	1	191	44	11	4	39	1.61
23882275--23882312	17	2.3	16	86	13	51	63	5	0	31	1.17
23882275--23882312	16	2.3	17	86	13	53	63	5	0	31	1.17
23882774--23882800	2	13.5	2	100	0	54	51	0	0	48	1.00
23888410--23888479	11	6.0	11	73	12	50	38	4	0	57	1.19
23888411--23888486	6	12.8	6	72	13	59	39	3	1	55	1.27
23888411--23888485	17	4.6	17	81	9	93	38	4	1	56	1.27
23888444--23888471	14	2.0	14	100	0	56	35	7	0	57	1.26
23888427--23888485	31	1.9	31	89	0	91	38	5	1	54	1.33
23890289--23890402	29	3.9	30	78	19	125	35	31	0	32	1.64
23890300--23890439	58	2.4	59	91	1	219	33	31	1	33	1.67
23890294--23890402	30	3.8	30	79	16	131	36	30	0	33	1.58
23890300--23890461	58	2.8	58	86	4	184	33	29	3	33	1.73
23896975--23897019	17	2.7	17	82	3	56	62	2	0	35	1.08
23902462--23902517	20	2.8	20	88	0	76	32	30	8	28	1.88
23907351--23907423	23	3.2	23	78	0	74	15	24	17	42	1.88
23909358--23909421	21	3.1	21	72	22	64	26	15	25	32	1.95
23916710--23916777	9	7.6	9	72	16	52	63	2	2	30	1.24
23916843--23916917	31	2.4	31	80	10	91	41	10	5	42	1.62
23925932--23926200	40	6.7	40	71	7	132	42	18	19	19	1.90
23926274--23926314	20	2.2	19	91	8	66	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23929413--23929494	24	3.3	24	72	12	76	20	7	8	63	1.47
23929436--23929510	24	3.0	25	66	14	73	24	6	9	60	1.52
23929411--23929510	50	2.0	50	96	0	182	23	7	9	61	1.50
23936656--23936836	78	2.4	75	82	8	228	33	8	10	47	1.69
23936704--23936864	78	2.1	78	83	4	200	34	10	9	45	1.71
23939222--23939477	129	2.0	128	89	2	397	30	13	17	38	1.88
23942553--23942604	26	2.0	25	82	10	61	5	48	3	42	1.45
23945370--23945420	15	3.5	15	70	5	50	56	15	5	21	1.60
23951019--23951108	28	3.1	28	76	18	94	56	7	13	22	1.62
23951023--23951086	32	2.0	33	90	3	103	54	9	14	21	1.67
23950958--23951130	59	2.9	59	82	4	224	50	10	15	24	1.75
23951659--23951718	24	2.4	26	83	13	81	40	1	0	58	1.08
23952197--23952243	21	2.2	21	80	0	58	55	8	4	31	1.49
23952230--23952262	13	2.5	13	86	13	50	54	12	0	33	1.37
23953144--23953213	31	2.3	31	82	9	81	41	8	8	41	1.66
23953881--23953934	21	2.5	21	82	8	65	48	1	1	48	1.23
23955496--23955533	4	9.5	4	100	0	76	26	23	0	50	1.50
23955696--23955730	15	2.4	15	90	4	54	57	22	2	17	1.53
23956628--23956686	29	2.1	27	84	6	73	62	0	13	23	1.31
23956727--23956791	33	2.0	33	84	6	87	32	4	1	61	1.26
23959244--23959275	15	2.0	17	88	11	50	31	6	3	59	1.38
23959373--23959429	27	2.1	28	86	3	80	45	7	5	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23959373--23959437	27	2.3	27	84	7	76	47	6	4	41	1.49
23960827--23960874	22	2.1	23	84	3	62	52	0	22	25	1.48
23964548--23964584	19	2.0	19	89	5	58	37	0	5	56	1.22
23964548--23964598	18	2.7	19	85	8	61	41	0	5	52	1.25
23970357--23970420	31	2.1	31	90	0	101	54	4	14	26	1.59
23978292--23978332	2	20.5	2	100	0	82	48	0	0	51	1.00
23979497--23979545	25	1.9	26	91	4	82	22	22	6	48	1.72
23981137--23981257	29	4.2	29	72	6	104	29	9	27	33	1.88
23981154--23981485	29	11.3	28	69	16	138	35	5	25	34	1.78
23981273--23981617	29	11.6	31	71	13	153	39	2	22	35	1.69
23981268--23981632	30	12.3	29	70	11	154	38	3	23	34	1.71
23981216--23981639	30	14.4	28	71	14	148	38	3	22	35	1.71
23981268--23981639	59	6.3	60	75	13	188	38	3	23	34	1.71
23982750--23982824	3	24.3	3	73	10	62	41	0	2	56	1.13
23982755--23982840	15	5.9	15	72	9	54	41	0	3	54	1.17
23994649--23994744	29	3.3	29	70	18	81	35	6	20	37	1.78
23994649--23995009	59	6.2	57	77	13	290	37	3	22	37	1.72
23994671--23995008	30	11.5	30	71	16	210	37	3	21	36	1.70
23994667--23995008	117	2.9	118	76	12	339	37	3	22	36	1.71
23994901--23995039	30	4.7	29	80	7	136	39	2	22	35	1.66
23996154--23996234	3	26.3	3	75	9	74	40	0	2	56	1.12
23996195--23996250	15	3.9	15	75	13	55	46	0	1	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23996902--23996994	11	8.9	10	72	21	68	55	4	0	39	1.19
23996916--23996996	17	4.8	17	87	0	117	54	4	0	40	1.22
23996902--23996996	6	16.8	6	71	20	71	54	4	0	41	1.20
24004190--24004498	140	2.2	140	98	0	600	24	17	23	34	1.96
24010147--24010173	14	1.9	14	100	0	54	77	0	14	7	0.97
24017548--24017606	29	2.0	30	83	9	77	30	8	13	47	1.73
24018905--24019005	33	2.9	34	80	8	123	46	13	1	37	1.55
24019512--24019537	8	3.2	8	100	0	52	53	0	34	11	1.37
24019953--24020009	26	2.2	25	79	11	62	38	3	7	50	1.46
24025206--24025275	24	2.9	24	89	4	97	24	21	27	27	1.99
24025887--24025932	21	2.2	21	88	0	65	21	10	19	47	1.80
24036481--24036537	24	2.4	24	90	0	96	19	21	26	33	1.97
24037893--24038744	41	21.2	41	79	6	712	30	26	17	24	1.97
24037893--24038744	121	7.1	121	80	7	722	30	26	17	24	1.97
24037890--24038612	162	4.5	161	81	6	763	30	26	18	24	1.98
24038116--24038780	80	8.3	79	78	7	463	30	27	16	25	1.97
24045838--24045883	18	2.6	18	82	6	58	47	2	0	50	1.13
24045849--24045886	17	2.2	18	81	9	53	52	0	0	47	1.00
24047648--24047704	24	2.4	24	87	0	87	29	24	17	28	1.97
24047648--24047722	24	3.1	23	84	3	78	29	24	21	25	1.99
24049222--24049261	14	2.6	16	81	18	57	62	0	2	35	1.09
24049447--24049480	6	5.7	6	96	0	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24049524--24049626	50	2.0	52	81	3	120	47	0	9	41	1.43
24059027--24059079	23	2.3	23	83	6	63	62	18	11	7	1.52
24059244--24059283	17	2.4	17	87	8	55	80	0	2	17	0.83
24062005--24062065	22	2.8	23	83	11	76	70	1	13	14	1.24
24062031--24062060	15	1.9	16	93	6	53	70	0	13	16	1.18
24066127--24066193	32	2.1	32	97	0	125	38	14	17	28	1.90
24077656--24077683	6	4.7	6	100	0	56	14	32	35	17	1.90
24078484--24078581	9	11.0	9	72	21	73	61	1	0	37	1.03
24078488--24078566	26	2.9	27	81	12	83	62	1	0	36	1.04
24078488--24078544	29	2.0	28	86	3	78	64	0	0	35	0.93
24078813--24078885	33	2.2	32	92	2	119	6	5	21	65	1.37
24078850--24078890	21	1.9	22	90	5	66	9	4	19	65	1.40
24078879--24078915	12	3.1	12	96	0	65	8	5	16	70	1.30
24080518--24080667	60	2.5	60	92	1	237	38	8	19	34	1.81
24086222--24086537	30	10.8	29	75	9	241	34	2	24	38	1.69
24086222--24086537	59	5.4	59	83	4	347	34	2	24	38	1.69
24094125--24094156	16	2.0	16	100	0	64	37	18	12	31	1.88
24097555--24097746	96	2.0	96	81	6	228	36	12	20	30	1.90
24098014--24098392	59	6.5	59	81	5	376	35	4	24	36	1.75
24098014--24098392	29	12.9	29	72	11	254	35	4	24	36	1.75
24099244--24099294	25	2.0	25	81	7	59	1	17	11	68	1.29
24099414--24099468	20	2.6	19	81	16	56	47	5	1	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24099428--24099468	20	2.0	20	90	0	64	51	2	2	43	1.28
24099976--24100030	25	2.2	25	93	0	92	20	10	50	18	1.76
24105238--24105275	15	2.6	15	87	4	51	55	0	0	44	0.99
24105629--24105673	20	2.3	20	85	7	58	44	2	8	44	1.47
24105990--24106059	30	2.4	29	85	2	95	31	1	14	52	1.50
24106228--24106295	31	2.3	29	82	14	77	39	13	10	36	1.78
24110073--24110115	18	2.3	19	84	15	54	69	2	2	25	1.12
24119383--24119434	19	2.8	18	80	11	61	65	1	0	32	1.04
24119383--24119435	18	2.9	18	80	2	61	66	1	0	32	1.03
24119413--24119446	11	3.2	11	91	4	52	73	0	2	23	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120