genome.fa.s5.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  47  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13253995--13254058	28	2.3	27	92	7	103	81	0	12	6	0.87
13254978--13255804	49	16.8	50	75	7	568	33	16	32	17	1.92
13254982--13255804	99	8.3	98	78	6	605	33	17	32	17	1.93
13255719--13255837	50	2.4	50	84	1	150	36	16	28	18	1.93
13256101--13256674	78	7.4	78	81	4	588	24	32	18	24	1.97
13256095--13256600	236	2.2	232	84	5	635	24	32	19	23	1.98
13256155--13256672	39	13.3	39	69	16	243	24	32	18	24	1.97
13259368--13259424	21	3.1	19	73	17	57	21	1	19	57	1.49
13259398--13259461	12	5.2	12	73	17	60	26	1	17	54	1.51
13259389--13259475	25	3.5	24	78	10	95	21	1	19	57	1.47
13259463--13259500	17	2.2	17	86	9	51	13	5	23	57	1.56
13261677--13261877	79	2.5	79	88	1	296	21	20	27	30	1.98
13263561--13263676	62	1.9	59	84	5	151	52	5	2	39	1.37
13269817--13269916	36	2.8	36	86	3	121	36	18	24	22	1.95
13272244--13272431	53	3.8	49	82	13	233	34	22	15	27	1.94
13272256--13272431	44	3.6	46	83	12	194	34	22	15	28	1.94
13272256--13272431	95	1.8	96	91	2	291	34	22	15	28	1.94
13272402--13272563	28	6.1	28	64	18	94	34	21	14	29	1.93
13272429--13272590	53	3.1	53	87	5	240	35	22	14	27	1.93
13272363--13272512	81	1.9	79	91	2	246	34	20	15	29	1.93
13304267--13304339	29	2.6	28	77	14	78	43	4	1	50	1.29
13304286--13304326	18	2.3	18	83	4	57	39	7	2	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13308161--13308202	17	2.3	19	80	8	52	40	7	2	50	1.43
13319189--13319229	17	2.3	19	79	8	50	39	7	2	51	1.43
13323025--13323098	29	2.6	29	79	16	91	45	2	1	50	1.24
13330047--13330152	48	2.2	48	83	3	126	22	16	21	39	1.92
13335210--13335304	37	2.5	37	82	1	118	17	17	40	24	1.91
13344701--13344748	25	1.9	25	83	8	62	37	8	33	20	1.83
13346067--13346100	17	2.0	17	88	0	50	58	14	5	20	1.57
13348573--13348623	21	2.4	21	80	0	57	23	17	23	35	1.95
13349073--13349129	24	2.4	25	80	11	66	22	8	12	56	1.63
13364781--13364826	23	2.0	23	100	0	92	43	4	17	34	1.69
13368108--13368144	17	2.1	19	85	10	51	13	13	8	64	1.48
13388364--13388507	53	2.8	52	82	4	164	26	15	26	31	1.95
13395519--13395714	52	3.8	52	84	5	245	28	13	25	32	1.94
13395519--13395714	105	1.9	104	83	9	256	28	13	25	32	1.94
13399914--13399944	10	3.1	10	95	0	53	29	12	32	25	1.93
13404651--13404699	24	2.0	24	92	0	80	44	18	20	16	1.86
13408109--13408187	12	6.3	12	72	13	61	67	16	5	11	1.39
13408214--13408268	10	5.4	10	80	4	56	72	9	7	10	1.27
13408214--13408274	21	3.0	21	75	2	61	70	9	8	11	1.34
13422998--13423133	43	2.9	49	78	15	160	5	17	15	61	1.51
13431229--13431262	15	2.3	15	89	0	50	70	2	17	8	1.25
13439292--13439405	45	2.5	45	84	7	133	37	13	15	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13441251--13441294	16	2.8	16	73	13	54	47	2	2	47	1.27
13441360--13441460	49	2.1	49	90	0	157	33	7	10	47	1.68
13445192--13445292	49	2.1	49	86	3	141	33	8	10	46	1.70
13453426--13453553	15	8.5	15	79	0	121	46	21	7	24	1.78
13453400--13453553	30	5.2	30	81	0	148	44	22	9	24	1.82
13453387--13453537	45	3.4	45	84	3	189	43	23	10	23	1.84
13454135--13454195	20	3.0	20	85	4	68	36	19	16	27	1.93
13461902--13462062	56	2.9	56	86	0	223	34	14	25	26	1.94
13462206--13462371	87	1.9	87	86	4	237	21	7	24	46	1.76
13462167--13462379	29	7.4	29	78	3	180	23	8	24	43	1.81
13466823--13466847	13	1.9	13	100	0	50	32	16	28	24	1.96
13466830--13466885	26	2.2	25	93	3	94	35	25	23	16	1.94
13472757--13472800	23	2.0	22	86	4	61	45	15	0	38	1.47
13472871--13472955	43	2.0	43	100	0	170	49	4	4	41	1.44
13472880--13472956	21	3.6	21	64	3	55	54	3	3	37	1.37
13473512--13473596	38	2.2	38	91	0	134	24	15	35	24	1.94
13473493--13473614	38	3.3	38	81	2	104	22	15	33	27	1.95
13490430--13490511	23	3.6	23	81	0	83	29	23	17	30	1.97
13498245--13498468	52	4.3	52	90	2	344	25	13	25	35	1.93
13498245--13498468	102	2.2	104	90	2	344	25	13	25	35	1.93
13501240--13501302	23	2.7	22	80	9	63	31	14	19	34	1.91
13506408--13506470	32	2.0	32	93	0	108	61	7	4	25	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13509921--13509965	12	3.7	12	84	3	63	0	33	0	66	0.92
13517449--13517697	51	4.9	51	87	1	347	33	14	21	30	1.93
13521516--13521546	16	1.9	16	93	0	53	25	19	6	48	1.72
13524750--13525036	51	5.6	51	89	0	423	33	14	22	29	1.93
13530781--13530827	20	2.5	19	87	12	71	12	8	0	78	0.95
13532604--13532651	24	2.0	25	91	4	80	27	16	12	43	1.84
13540386--13540442	18	2.9	19	84	10	71	70	0	29	0	0.88
13540832--13540875	17	2.6	16	82	10	52	13	9	13	63	1.51
13542944--13542991	24	2.0	25	87	4	71	29	14	12	43	1.82
13553354--13553435	20	4.0	21	72	25	77	52	0	0	47	1.00
13553372--13553403	11	3.1	11	86	13	50	53	0	0	46	1.00
13553349--13553433	40	2.2	38	93	4	143	49	0	0	50	1.00
13553589--13553671	26	3.0	29	74	12	102	54	9	19	16	1.70
13553599--13553693	29	3.5	28	78	8	108	55	12	17	13	1.68
13553833--13553873	20	2.0	20	100	0	82	39	9	34	17	1.82
13559623--13559683	26	2.5	24	76	7	61	44	0	1	54	1.10
13559567--13559727	58	2.8	58	83	6	202	42	1	1	53	1.22
13570878--13570988	56	2.0	56	96	0	204	54	10	11	22	1.67
13577522--13577556	17	2.1	17	94	0	61	48	5	8	37	1.58
13579174--13579211	15	2.6	15	79	4	51	23	7	0	68	1.16
13582966--13583046	38	2.1	38	88	0	117	44	12	30	12	1.79
13584893--13585052	41	3.9	41	85	1	196	18	26	12	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13584899--13585093	82	2.4	82	80	5	191	20	24	14	41	1.89
13585026--13585135	40	2.8	40	85	2	141	21	20	20	37	1.95
13585514--13585544	11	2.8	11	95	0	53	12	54	12	19	1.70
13585602--13585637	5	7.4	5	90	6	56	2	38	0	58	1.13
13604042--13604072	16	1.9	16	93	0	53	61	0	16	22	1.34
13607637--13607674	15	2.5	15	91	8	60	26	18	36	18	1.94
13613469--13613608	23	6.3	23	73	14	105	42	18	24	15	1.88
13613511--13613608	23	4.2	23	84	10	119	40	18	24	16	1.90
13617589--13617662	27	2.8	26	73	15	71	48	4	1	45	1.29
13629280--13629727	195	2.3	193	80	6	492	27	18	28	26	1.98
13647613--13647648	18	2.0	18	94	0	63	47	0	0	52	1.00
13647546--13647783	110	2.2	106	87	5	338	31	5	10	52	1.59
13647583--13647856	110	2.5	111	75	11	260	32	5	8	53	1.54
13649952--13650046	30	3.2	29	79	8	102	13	27	29	29	1.94
13652061--13652104	23	1.9	23	86	9	63	68	0	13	18	1.22
13653404--13653448	16	2.9	16	71	21	51	71	2	0	26	0.98
13653413--13653437	13	1.9	13	100	0	50	72	4	0	24	1.02
13664378--13664411	12	2.8	12	86	0	50	58	8	14	17	1.61
13664372--13664409	18	2.1	18	95	0	67	55	13	13	18	1.69
13664756--13664789	15	2.2	16	89	5	52	0	17	0	82	0.67
13664758--13664805	24	2.0	24	88	8	71	2	20	0	77	0.88
13665846--13665960	40	2.9	41	79	8	155	40	22	20	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13665882--13665944	20	3.2	20	70	14	58	39	23	20	15	1.91
13672834--13672880	25	2.0	25	87	8	71	38	2	4	55	1.31
13673943--13674001	18	3.1	18	75	17	57	23	3	1	71	1.11
13676800--13676830	12	2.7	11	90	9	53	16	9	0	74	1.07
13681700--13681737	15	2.5	16	79	12	53	36	0	10	52	1.36
13682247--13682281	17	2.0	18	88	5	54	17	20	17	45	1.85
13684134--13700007	207	75.3	208	80	8	13714	26	18	15	39	1.90
13699906--13700201	157	1.9	157	85	4	418	27	18	16	37	1.93
13700087--13703544	208	16.4	208	81	6	3636	26	17	15	39	1.90
13700061--13703544	630	5.5	630	80	7	3617	26	17	15	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120