genome.fa.s5.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  113  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33660480--33660514	2	17.5	2	100	0	70	51	0	0	48	1.00
33676666--33676704	19	2.1	19	95	0	69	41	10	23	25	1.86
33677055--33677093	17	2.3	17	95	0	69	25	10	28	35	1.89
33682238--33682275	17	2.2	17	90	9	60	65	2	2	28	1.19
33686628--33686669	8	5.5	8	80	11	52	66	0	0	33	0.92
33686644--33686691	25	2.0	24	83	4	60	64	0	0	35	0.94
33686617--33686691	11	7.1	11	73	18	54	65	0	0	34	0.93
33691106--33691141	16	2.3	16	90	4	56	55	2	0	41	1.14
33692446--33692509	29	2.2	29	83	8	78	50	4	1	43	1.32
33692458--33692551	47	2.0	47	84	10	122	52	4	0	43	1.21
33692728--33692765	19	2.0	20	89	5	60	47	5	0	47	1.24
33694478--33694552	33	2.4	31	78	14	82	36	12	12	40	1.79
33695758--33695809	26	2.0	26	100	0	104	11	7	15	65	1.46
33706245--33706277	2	16.5	2	100	0	66	51	0	0	48	1.00
33727132--33727164	16	2.1	16	88	11	50	45	0	0	54	0.99
33756405--33756450	21	2.2	21	84	0	56	32	21	17	28	1.96
33777862--33777902	22	1.9	22	90	10	59	26	2	0	70	0.99
33779915--33780027	41	2.8	41	88	0	172	37	11	26	24	1.90
33790502--33790536	17	2.0	18	88	5	54	48	0	5	45	1.26
33795132--33795160	15	1.9	15	100	0	58	68	0	0	31	0.89
33809614--33809651	19	2.0	19	100	0	76	21	5	31	42	1.75
33814503--33814550	23	2.2	21	82	14	53	29	2	6	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33818856--33818896	14	2.8	16	78	17	52	17	17	2	63	1.42
33820546--33820982	218	2.0	218	98	0	847	32	18	20	28	1.96
33822084--33822494	200	2.0	203	93	1	702	30	13	17	38	1.88
33823630--33823676	22	2.0	22	84	12	58	27	4	10	57	1.51
33828190--33828230	22	1.9	21	90	5	64	41	4	12	41	1.64
33832332--33832360	14	2.1	14	100	0	58	37	6	27	27	1.82
33836447--33836510	30	2.3	27	86	8	83	43	14	14	28	1.83
33846322--33846510	63	3.0	63	92	0	306	43	14	23	18	1.87
33848431--33848462	2	16.0	2	100	0	64	0	50	0	50	1.00
33857697--33857732	7	5.3	7	96	3	65	58	0	0	41	0.98
33881734--33882080	188	1.9	187	87	4	511	21	17	20	40	1.91
33895337--33895448	54	2.1	54	93	3	190	48	3	16	31	1.64
33895423--33895482	17	3.6	17	76	10	61	58	0	20	21	1.40
33912197--33912230	16	2.2	16	89	5	52	64	11	0	23	1.26
33913261--33913314	15	3.3	15	74	18	54	44	0	1	53	1.11
33913396--33913451	18	2.9	19	73	26	55	51	0	0	48	1.00
33915192--33915357	23	7.4	23	75	14	159	42	22	23	10	1.85
33915167--33915357	48	4.2	44	76	15	167	41	22	24	10	1.86
33915198--33915272	39	1.9	39	91	0	123	44	22	22	10	1.84
33918181--33918228	25	1.9	25	83	8	62	56	8	2	33	1.41
33920921--33920981	17	3.4	17	68	16	50	34	18	3	44	1.66
33921310--33921363	3	18.0	3	100	0	108	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33928655--33928974	59	5.4	58	87	6	432	33	2	29	34	1.72
33930039--33930121	3	27.0	3	73	9	60	37	2	2	57	1.25
33930038--33930121	31	2.7	31	74	3	89	38	2	2	57	1.25
33931154--33931203	19	2.6	19	87	9	66	50	0	0	50	1.00
33936611--33936658	20	2.6	18	83	6	60	45	4	2	47	1.33
33936824--33936848	13	1.9	13	100	0	50	64	0	0	36	0.94
33944118--33944201	36	2.3	36	95	0	150	26	35	21	16	1.94
33948956--33949119	84	2.0	84	90	2	258	29	11	12	45	1.78
33961685--33961782	33	2.9	33	78	4	115	36	19	25	18	1.94
33972838--33972879	13	3.1	13	83	16	50	42	0	4	52	1.22
33997214--33997268	19	3.1	18	79	7	58	78	0	7	14	0.96
34007275--34007314	14	2.6	15	85	14	55	35	0	0	65	0.93
34007303--34007370	29	2.3	31	85	10	88	45	1	2	50	1.26
34007929--34007967	19	2.1	19	85	0	51	48	7	5	38	1.54
34009888--34009926	20	1.9	21	89	5	62	38	0	0	61	0.96
34010428--34010461	6	5.7	6	92	0	50	20	38	23	17	1.93
34018895--34018950	28	2.0	29	82	10	71	46	3	0	50	1.19
34026778--34026807	2	15.0	2	100	0	60	50	0	0	50	1.00
34029512--34029546	2	17.5	2	100	0	70	51	0	0	48	1.00
34030135--34030178	17	2.6	17	96	0	79	43	0	0	56	0.99
34030134--34030210	6	12.8	6	71	15	61	46	0	1	51	1.09
34030143--34030192	15	3.3	15	79	15	59	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34030162--34030210	21	2.2	23	89	7	75	48	0	2	48	1.12
34030143--34030209	32	2.2	31	84	10	84	47	0	1	50	1.10
34030896--34030962	3	21.3	3	82	8	80	61	1	4	32	1.25
34031237--34031266	15	1.9	16	93	6	53	23	20	16	40	1.91
34032016--34032210	30	6.6	29	71	12	130	37	20	4	37	1.73
34032007--34032145	60	2.3	58	80	7	145	38	19	4	37	1.72
34032105--34032416	117	2.7	115	78	11	307	34	25	4	35	1.75
34032162--34032415	59	4.3	58	86	5	327	33	27	3	35	1.76
34032163--34032321	29	5.5	28	73	16	135	34	27	1	36	1.68
34032162--34032353	29	6.5	31	70	17	133	34	26	2	35	1.71
34034685--34034709	13	1.9	13	100	0	50	36	8	16	40	1.77
34034788--34034850	24	2.6	24	87	0	90	50	9	12	26	1.71
34035087--34035126	15	2.7	15	100	0	80	60	27	12	0	1.33
34035169--34035193	13	1.9	13	100	0	50	28	8	24	40	1.83
34035272--34035334	24	2.6	24	82	0	72	53	7	12	25	1.65
34037262--34037323	24	2.6	24	81	0	70	51	8	11	29	1.66
34048429--34048476	19	2.5	19	83	10	53	64	2	0	33	1.05
34052524--34052569	23	2.0	23	86	0	65	32	13	19	34	1.90
34052614--34052660	9	5.2	9	86	0	67	46	12	10	29	1.76
34052818--34052901	42	2.0	42	88	4	125	47	21	0	30	1.51
34068248--34068321	36	2.1	36	100	0	148	36	13	13	36	1.84
34084648--34084711	31	2.1	29	78	10	74	57	3	3	35	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34086822--34086846	2	12.5	2	100	0	50	52	0	0	48	1.00
34092438--34092493	23	2.4	23	77	8	69	71	12	12	3	1.27
34108990--34109028	17	2.3	17	95	0	69	48	25	12	12	1.77
34115119--34115169	2	25.5	2	87	0	75	45	49	0	5	1.26
34118702--34118749	2	24.0	2	100	0	96	0	50	0	50	1.00
34120668--34120700	2	16.5	2	100	0	66	0	48	0	51	1.00
34121599--34121636	2	19.0	2	100	0	76	0	50	0	50	1.00
34123462--34123489	2	14.0	2	100	0	56	50	0	0	50	1.00
34124337--34124370	15	2.1	17	89	10	54	5	70	0	23	1.09
34124574--34124604	16	1.9	16	93	0	53	45	16	3	35	1.63
34125103--34125142	20	2.0	20	90	0	62	17	12	27	42	1.85
34125124--34125182	31	1.9	31	89	3	93	25	11	20	42	1.86
34128589--34128631	3	14.3	3	100	0	86	67	0	32	0	0.91
34134369--34134440	28	2.6	27	73	20	67	38	1	0	59	1.06
34137526--34137557	7	4.6	7	100	0	64	43	15	40	0	1.47
34156745--34156792	19	2.5	20	86	3	62	43	18	8	29	1.79
34160781--34160814	6	5.7	6	100	0	68	14	32	0	52	1.42
34185385--34185414	15	2.0	15	100	0	60	26	13	20	40	1.89
34187512--34187867	177	2.0	176	96	0	649	44	14	15	25	1.84
34194331--34194471	50	2.8	50	97	0	264	34	14	21	29	1.93
34216469--34216517	2	25.0	2	95	4	91	51	0	0	48	1.00
34220099--34220133	17	2.1	17	94	0	61	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34220105--34220141	12	3.2	12	85	14	51	51	0	0	48	1.00
34221020--34221063	23	1.9	23	85	0	61	45	0	0	54	0.99
34225493--34225530	9	4.2	9	100	0	76	42	0	0	57	0.98
34230541--34230584	16	3.0	16	75	18	51	34	0	0	65	0.93
34232936--34232979	10	4.4	10	80	8	54	63	6	0	29	1.20
34232942--34233014	20	3.7	20	76	8	78	63	5	0	31	1.17
34233043--34233092	18	2.7	18	78	3	55	60	4	0	36	1.16
34246631--34246695	10	6.5	10	72	12	53	58	1	6	33	1.32
34251044--34251068	3	8.3	3	100	0	50	64	0	36	0	0.94
34262540--34262613	32	2.4	30	78	14	78	29	0	6	63	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120