genome.fa.s5.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  67  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19771391--19771543	58	2.6	57	82	11	168	37	1	30	30	1.69
19771507--19771778	30	9.0	30	79	7	266	36	2	21	39	1.67
19773639--19773714	6	13.0	6	75	20	72	53	1	2	42	1.23
19773640--19773714	31	2.3	32	86	8	100	54	1	2	41	1.23
19773641--19773714	17	4.6	16	81	11	98	55	1	2	40	1.22
19774040--19774152	31	3.5	31	71	13	109	27	20	15	36	1.93
19773997--19774621	68	8.9	68	88	6	881	28	20	16	34	1.95
19774252--19774500	31	7.5	31	68	15	156	27	20	16	35	1.94
19773999--19774635	212	3.0	211	88	6	930	28	19	17	34	1.95
19786348--19786478	58	2.2	58	91	1	208	35	1	32	30	1.67
19786372--19786468	29	3.3	29	70	11	99	35	1	36	27	1.64
19786379--19786471	28	3.2	28	71	11	89	35	1	35	27	1.65
19786453--19786615	30	5.5	28	80	11	157	34	1	25	38	1.67
19786379--19786615	60	4.0	56	77	12	167	35	1	28	35	1.67
19786453--19786615	60	2.7	57	79	13	177	34	1	25	38	1.67
19787008--19787042	15	2.4	15	90	4	54	14	25	45	14	1.82
19787710--19787765	28	2.0	27	86	10	78	32	3	0	64	1.11
19787711--19787749	3	13.0	3	84	10	53	30	2	0	66	1.05
19788464--19788539	6	13.0	6	75	20	72	53	1	2	42	1.23
19788465--19788539	31	2.3	32	86	8	100	54	1	2	41	1.23
19788466--19788539	17	4.6	16	81	11	98	55	1	2	40	1.22
19788502--19788560	27	2.2	27	78	0	64	52	6	1	38	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19793153--19793421	111	2.4	111	83	2	308	18	20	31	30	1.96
19793153--19793450	37	8.0	37	82	2	267	17	20	30	31	1.96
19798015--19798096	28	3.2	28	63	28	72	40	17	17	25	1.90
19802239--19803468	620	2.0	622	88	1	1851	30	20	16	32	1.95
19824776--19825201	50	8.5	50	71	10	287	26	17	19	37	1.93
19824761--19825151	100	3.9	100	80	4	401	26	17	19	37	1.93
19824980--19825254	150	1.8	151	85	2	392	25	16	19	37	1.93
19827648--19827674	7	3.9	7	100	0	54	11	29	0	59	1.32
19830719--19830745	7	3.9	7	100	0	54	11	29	0	59	1.32
19835779--19835827	3	16.3	3	100	0	98	67	32	0	0	0.91
19835962--19836012	25	2.0	26	88	3	77	74	3	3	17	1.12
19842253--19842389	51	2.7	50	75	9	143	54	4	4	36	1.40
19847278--19847338	26	2.3	26	88	0	86	63	1	8	26	1.31
19855048--19855082	3	11.7	3	100	0	70	68	0	0	31	0.90
19855328--19855355	2	14.0	2	100	0	56	50	0	0	50	1.00
19857176--19857304	23	5.5	23	78	8	125	13	22	19	44	1.86
19857177--19857300	48	2.6	45	80	10	140	14	23	18	43	1.87
19863770--19863815	20	2.4	19	78	7	56	39	2	8	50	1.46
19864685--19864751	30	2.4	26	77	17	80	26	1	10	61	1.37
19864704--19864761	26	2.2	26	84	0	71	29	3	8	58	1.44
19864773--19864815	21	2.0	21	81	0	50	25	2	27	44	1.66
19865555--19865604	21	2.4	21	80	6	57	32	28	12	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19867930--19868021	32	2.6	35	78	16	100	63	9	2	25	1.37
19867969--19868038	6	11.3	6	82	11	79	65	10	0	24	1.23
19867931--19868107	44	4.2	44	74	8	177	63	10	1	24	1.34
19867941--19868107	32	5.3	32	77	12	157	62	10	1	25	1.35
19867963--19868103	44	3.0	44	80	15	185	64	10	0	24	1.25
19871115--19871159	19	2.4	19	88	7	65	57	6	4	31	1.44
19872149--19872197	23	2.0	24	81	18	66	53	4	18	24	1.62
19875863--19875921	20	2.9	21	76	2	66	33	27	13	25	1.93
19878740--19878794	13	4.1	14	74	6	51	29	1	3	65	1.20
19880576--19880614	20	2.0	19	90	5	60	33	10	10	46	1.72
19882140--19882222	42	2.0	42	97	0	157	38	20	4	36	1.74
19883111--19883152	21	2.0	22	90	4	68	40	0	0	59	0.97
19890639--19890685	5	9.6	5	79	11	53	0	19	0	80	0.70
19890641--19890689	7	7.3	7	84	6	66	0	22	0	77	0.77
19890639--19890685	9	4.8	10	76	12	53	0	19	0	80	0.70
19893271--19893309	20	2.0	20	85	5	53	58	7	17	15	1.59
19900578--19900634	6	9.5	6	92	0	87	47	0	31	21	1.51
19908716--19908760	23	2.0	23	91	4	74	33	4	8	53	1.52
19915091--19915133	13	3.2	13	83	3	50	81	9	2	6	0.95
19922665--19922836	37	4.4	38	82	9	195	56	19	2	20	1.55
19922674--19922774	12	7.9	13	74	17	70	55	17	2	23	1.56
19922665--19922836	79	2.2	77	86	6	231	56	19	2	20	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19928218--19928261	21	2.1	21	84	12	56	56	4	15	22	1.57
19928218--19928261	20	2.1	20	83	8	52	56	4	15	22	1.57
19928723--19929050	120	2.7	118	78	11	353	30	6	10	51	1.63
19934541--19934635	17	5.4	18	80	12	108	40	1	5	53	1.30
19934560--19934676	6	19.8	6	74	15	102	46	0	2	50	1.21
19934541--19934664	35	3.7	35	81	10	61	42	0	4	52	1.26
19934609--19934676	29	2.3	29	97	2	127	54	0	0	45	0.99
19934595--19934675	23	3.5	22	78	11	81	49	0	1	49	1.08
19935440--19935511	25	2.9	25	91	0	117	51	1	2	44	1.24
19936588--19936822	29	8.0	29	71	13	151	37	22	4	34	1.74
19936596--19936757	59	2.8	58	76	9	152	38	20	3	37	1.70
19936741--19936845	29	3.6	28	71	17	88	36	23	4	35	1.76
19936712--19936847	59	2.3	59	80	9	161	37	23	5	33	1.77
19946042--19946087	3	15.3	3	100	0	92	32	0	0	67	0.91
19946598--19946635	20	1.9	20	89	10	60	36	31	5	26	1.79
19948008--19948054	18	2.7	18	77	12	53	38	0	4	57	1.18
19949470--19949506	18	2.1	18	100	0	74	56	5	0	37	1.22
19957297--19957330	10	3.4	10	87	0	50	64	0	0	35	0.94
19959631--19959684	26	2.1	26	85	0	72	38	12	22	25	1.90
19959902--19959947	11	4.4	11	78	10	51	30	0	2	67	1.03
19961167--19961236	20	3.6	19	80	5	86	42	0	5	51	1.25
19975812--19975856	22	2.0	22	83	8	56	57	0	2	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19977741--19977778	20	1.9	20	84	10	51	47	10	7	34	1.67
19980047--19980088	21	2.0	20	86	13	59	61	0	7	30	1.22
19981441--19981633	53	3.6	53	89	0	287	35	20	15	28	1.93
19984420--19984467	25	1.9	26	87	8	73	50	0	0	50	1.00
19986565--19986619	13	4.1	13	80	4	56	50	0	1	47	1.11
19986577--19986617	9	4.7	9	84	3	57	48	0	2	48	1.14
19988237--19988289	18	2.9	18	81	10	56	58	9	5	26	1.52
19989707--19989794	28	3.1	28	76	7	81	28	26	31	13	1.94
19992810--19992857	25	1.9	26	83	8	64	54	10	10	25	1.66
19994604--19994703	31	3.2	30	90	5	146	44	18	5	33	1.71
19995455--19995490	17	2.1	18	94	5	65	5	33	0	61	1.19
19996427--19996459	17	2.0	16	94	5	57	66	0	27	6	1.15
19997863--19997938	39	1.9	39	91	0	125	22	9	1	67	1.27
19998432--19998520	21	4.1	21	84	5	99	12	23	10	53	1.68
20008979--20009015	18	2.1	18	94	0	65	24	5	5	64	1.36
20008983--20009053	27	2.6	27	88	4	97	29	5	9	54	1.56
20011064--20011614	278	2.0	276	88	5	815	35	13	20	31	1.91
20014602--20014672	33	2.2	33	80	9	85	40	4	2	52	1.36
20023635--20023702	11	6.3	11	77	14	61	38	2	1	57	1.23
20023635--20023702	5	12.6	5	73	14	55	38	2	1	57	1.23
20023634--20023676	16	2.7	16	88	0	68	37	2	0	60	1.10
20023645--20023698	28	1.9	28	88	0	81	37	3	1	57	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20023650--20023715	22	3.0	23	75	6	64	40	3	1	54	1.25
20023634--20023701	16	4.1	16	77	5	64	39	2	1	55	1.24
20023656--20023715	28	2.1	28	81	0	66	41	3	1	53	1.27
20024413--20024446	3	11.7	3	87	6	52	61	0	2	35	1.11
20025172--20025509	161	2.1	161	92	2	570	26	17	13	42	1.86
20025611--20026183	59	9.8	59	87	3	777	32	28	3	35	1.74
20025597--20026183	117	5.0	117	87	4	774	32	28	3	35	1.74
20025611--20026183	176	3.3	176	90	2	859	32	28	3	35	1.74
20038311--20039067	78	9.8	77	90	3	1138	31	16	18	33	1.94
20038311--20039067	154	4.9	154	91	2	1150	31	16	18	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120